BDGP Sequence Production Resources |
Search the DGRC for RE02962
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 29 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Aats-arg-RA |
Protein status: | RE02962.pep: gold |
Sequenced Size: | 2141 |
Gene | Date | Evidence |
---|---|---|
CG9020 | 2001-12-14 | Blastp of sequenced clone |
CG9020 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9020 | 2003-01-01 | Sim4 clustering to Release 3 |
Aats-arg | 2008-04-29 | Release 5.5 accounting |
Aats-arg | 2008-08-15 | Release 5.9 accounting |
Aats-arg | 2008-12-18 | 5.12 accounting |
2141 bp (2141 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070924
> RE02962.complete ATCCTTGTGTTGTTGTTATTAATCAGCGGAGCAACAGAAGTCACAATTTG GAAACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCAGGGAGCTGGAA CTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCCAAAAGCGGTGA ACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAATAAGAAGCTGA AGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGGAATCAACTGCC GCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCGATCACCGAACA CCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTTCCCGGAATTCA GAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGTCTGCGAAATTC GGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAGAAGCTGAAAGA GAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGAGTTGAAAGGAC ACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTGCCGGAGCTGGC TTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTAGCCTTAAGCAA TCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAAAAAGCGAGTCC TGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGCATGTCGGTCAC TTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTGCTGGAGTTCCT GCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTGGGGAACACAGT TTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCAACTACCTAAAT GAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAGGAATCCAAGAA GCGATTCGATGAAGATGAGGAGTTCAAAAAACGTGCCTACAGTCGAGTGG TTTCATTGCAGAAAGGTGTGCCGAACTCCATTAAGGCGTGGGAGCTAATT TGCAATGTGTCGCGAAAGGAGTTCCAAACGATCTACGAACGATTAGATAT TAGCGTCAAGGAACGGGGGGAATCGTTCTACCAATCACGTATGCTGTCCG TTGTGGAATACTTGCGAGGCAAGGGTCTGCTGGAAGTGGATGAAGGACGC GAGATCATGTGGCCAGACGATACGAAAACTGGCATACCTCTGACAATCGT GAAATCGGATGGCGGCTTTACCTATGATACCTCTGACATGGCAGCCATTC GCCATCGCTTGGAGGAGGAGCTTTGCGATTGGATCATCTATGTGGTCGAC TCCGGCCAAAGCACGCATTTTAATACCATATTCAAAGCTGCCGAACGATC TGCTATCCTAAATCCACTCAGCCATCGTGTTGACCACGTACAGTTTGGCG TCGTTCTGGGCGAGGATGGCAAGAAGTTTAAGACTCGATCGGGTGATACG GTTAAGCTGTCCGATTTGCTGGATGAGGGAATGAAGCGATCCCTGCAGCA ATTGGAGAGTCGTGGCCGCGATAAGGTCCTCACGCCACAGGAACTGAAGG ACGCCCAAGAGTCGCTGGCATATGGATGCATTAAGTATTCGGATTTATGT CACAACCGGATCAGCGACTATATATTTTCGTTCGATAAGATGCTTGAGGA TCGCGGCAACACTGCGGTGTACTTACTTTACACCTACACACGTATTTGCT CCATTGCACGAAACTCTGGCGAAGATTTCACCAATTTACCCGAAATACTG AAGAAGACCAACATTGTGTTGGACCACGAAAAGGAATGGAAGCTGGCTAA GACTCTACTGAAACTCCACGACATACTCATCAAGTGCTCAAAGGAACTTT TCCTGCACTTCCTGTGCGAGTTTTGCTTCGAGGTGTGCACAGTGTTCACC GAATTCTATGACTCTTGTTATTGCATCGAAAAGAACAAACAAGGCGATAT TATTGGGGTCAATCATAGCCGAATTCTATTGTGCGAGGCAACTGCGGCTG TGTTGCGCCAATGCTTTTATATACTAGGCCTTAAACCAGTTTCGAAAATG TAAAAAGTTCTACTACTGACATCATGTGTACGCGAATAAAATGAAACATT TTATAAAAGTAAAATTATATACCTCGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15731611..15732832 | 2124..903 | 6050 | 99.7 | Minus |
chrX | 22417052 | chrX | 15733283..15733631 | 573..225 | 1745 | 100 | Minus |
chrX | 22417052 | chrX | 15732895..15733228 | 903..570 | 1655 | 99.7 | Minus |
chrX | 22417052 | chrX | 15733693..15733822 | 226..97 | 650 | 100 | Minus |
chrX | 22417052 | chrX | 15733879..15733976 | 98..1 | 475 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15841765..15842992 | 2130..903 | 6125 | 99.9 | Minus |
X | 23542271 | X | 15843443..15843791 | 573..225 | 1745 | 100 | Minus |
X | 23542271 | X | 15843055..15843388 | 903..570 | 1655 | 99.7 | Minus |
X | 23542271 | X | 15843853..15843982 | 226..97 | 650 | 100 | Minus |
X | 23542271 | X | 15844039..15844136 | 98..1 | 475 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15849863..15851090 | 2130..903 | 6125 | 99.9 | Minus |
X | 23527363 | X | 15851541..15851889 | 573..225 | 1745 | 100 | Minus |
X | 23527363 | X | 15851153..15851486 | 903..570 | 1655 | 99.7 | Minus |
X | 23527363 | X | 15851951..15852080 | 226..97 | 650 | 100 | Minus |
X | 23527363 | X | 15852137..15852234 | 98..1 | 475 | 98.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15731609..15732831 | 904..2126 | 99 | <- | Minus |
chrX | 15732895..15733224 | 574..903 | 100 | <- | Minus |
chrX | 15733283..15733629 | 227..573 | 100 | <- | Minus |
chrX | 15733693..15733821 | 98..226 | 100 | <- | Minus |
chrX | 15733880..15733976 | 1..97 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..1998 | 56..2053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..1998 | 56..2053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..1998 | 56..2053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..1998 | 56..2053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..1998 | 56..2053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..2126 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..2126 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 10..2135 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 1..2126 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aats-arg-RA | 10..2135 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15841769..15842991 | 904..2126 | 99 | <- | Minus |
X | 15843055..15843384 | 574..903 | 100 | <- | Minus |
X | 15843443..15843789 | 227..573 | 100 | <- | Minus |
X | 15843853..15843981 | 98..226 | 100 | <- | Minus |
X | 15844040..15844136 | 1..97 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15841769..15842991 | 904..2126 | 99 | <- | Minus |
X | 15843055..15843384 | 574..903 | 100 | <- | Minus |
X | 15843443..15843789 | 227..573 | 100 | <- | Minus |
X | 15843853..15843981 | 98..226 | 100 | <- | Minus |
X | 15844040..15844136 | 1..97 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15841769..15842991 | 904..2126 | 99 | <- | Minus |
X | 15843055..15843384 | 574..903 | 100 | <- | Minus |
X | 15843443..15843789 | 227..573 | 100 | <- | Minus |
X | 15843853..15843981 | 98..226 | 100 | <- | Minus |
X | 15844040..15844136 | 1..97 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15735802..15737024 | 904..2126 | 99 | <- | Minus |
arm_X | 15737088..15737417 | 574..903 | 100 | <- | Minus |
arm_X | 15737476..15737822 | 227..573 | 100 | <- | Minus |
arm_X | 15737886..15738014 | 98..226 | 100 | <- | Minus |
arm_X | 15738073..15738169 | 1..97 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15852138..15852234 | 1..97 | 98 | Minus | |
X | 15851951..15852079 | 98..226 | 100 | <- | Minus |
X | 15851153..15851482 | 574..903 | 100 | <- | Minus |
X | 15851541..15851887 | 227..573 | 100 | <- | Minus |
X | 15849867..15851089 | 904..2126 | 99 | <- | Minus |
Translation from 55 to 2052
> RE02962.hyp MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL RQCFYILGLKPVSKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aats-arg-PA | 665 | CG9020-PA | 1..665 | 1..665 | 3429 | 100 | Plus |
CG10092-PB | 594 | CG10092-PB | 129..594 | 190..665 | 462 | 29.2 | Plus |
CG10092-PA | 594 | CG10092-PA | 129..594 | 190..665 | 462 | 29.2 | Plus |
Translation from 55 to 2052
> RE02962.pep MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL RQCFYILGLKPVSKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16459-PA | 666 | GF16459-PA | 3..666 | 4..665 | 2910 | 82.6 | Plus |
Dana\GF18177-PA | 570 | GF18177-PA | 94..570 | 180..665 | 474 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19367-PA | 664 | GG19367-PA | 1..664 | 1..665 | 3365 | 95 | Plus |
Dere\GG14252-PA | 572 | GG14252-PA | 103..572 | 186..665 | 451 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12545-PA | 668 | GH12545-PA | 3..668 | 2..665 | 2616 | 73.6 | Plus |
Dgri\GH18567-PA | 571 | GH18567-PA | 112..571 | 195..665 | 458 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ArgRS-PA | 665 | CG9020-PA | 1..665 | 1..665 | 3429 | 100 | Plus |
ArgRS-m-PB | 594 | CG10092-PB | 129..594 | 190..665 | 462 | 29.2 | Plus |
ArgRS-m-PA | 594 | CG10092-PA | 129..594 | 190..665 | 462 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14172-PA | 271 | GI14172-PA | 1..271 | 395..665 | 1224 | 81.9 | Plus |
Dmoj\GI21379-PA | 212 | GI21379-PA | 8..212 | 78..283 | 838 | 73.8 | Plus |
Dmoj\GI24765-PA | 571 | GI24765-PA | 112..571 | 195..665 | 456 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14083-PA | 664 | GL14083-PA | 1..664 | 1..665 | 2785 | 75.9 | Plus |
Dper\GL12462-PA | 572 | GL12462-PA | 4..572 | 87..665 | 483 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24005-PA | 282 | GA24005-PA | 1..282 | 1..283 | 1034 | 68.3 | Plus |
Dpse\GA10066-PA | 572 | GA10066-PA | 4..572 | 87..665 | 480 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22521-PA | 665 | GM22521-PA | 1..665 | 1..665 | 3489 | 98 | Plus |
Dsec\GM22602-PA | 178 | GM22602-PA | 35..144 | 474..583 | 580 | 98.2 | Plus |
Dsec\GM21064-PA | 499 | GM21064-PA | 122..499 | 277..665 | 251 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24677-PA | 665 | GD24677-PA | 1..665 | 1..665 | 3498 | 98.3 | Plus |
Dsim\GD17808-PA | 137 | GD17808-PA | 1..137 | 529..665 | 727 | 97.8 | Plus |
Dsim\GD17255-PA | 100 | GD17255-PA | 1..99 | 529..627 | 521 | 98 | Plus |
Dsim\GD19955-PA | 572 | GD19955-PA | 103..572 | 186..665 | 458 | 29 | Plus |
Dsim\GD17254-PA | 71 | GD17254-PA | 35..71 | 474..510 | 184 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14045-PA | 594 | GJ14045-PA | 5..594 | 75..665 | 2584 | 78.5 | Plus |
Dvir\GJ22551-PA | 571 | GJ22551-PA | 102..571 | 185..665 | 463 | 29.8 | Plus |