Clone RE02962 Report

Search the DGRC for RE02962

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:29
Well:62
Vector:pFlc-1
Associated Gene/TranscriptAats-arg-RA
Protein status:RE02962.pep: gold
Sequenced Size:2141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9020 2001-12-14 Blastp of sequenced clone
CG9020 2002-01-01 Sim4 clustering to Release 2
CG9020 2003-01-01 Sim4 clustering to Release 3
Aats-arg 2008-04-29 Release 5.5 accounting
Aats-arg 2008-08-15 Release 5.9 accounting
Aats-arg 2008-12-18 5.12 accounting

Clone Sequence Records

RE02962.complete Sequence

2141 bp (2141 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070924

> RE02962.complete
ATCCTTGTGTTGTTGTTATTAATCAGCGGAGCAACAGAAGTCACAATTTG
GAAACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCAGGGAGCTGGAA
CTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCCAAAAGCGGTGA
ACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAATAAGAAGCTGA
AGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGGAATCAACTGCC
GCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCGATCACCGAACA
CCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTTCCCGGAATTCA
GAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGTCTGCGAAATTC
GGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAGAAGCTGAAAGA
GAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGAGTTGAAAGGAC
ACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTGCCGGAGCTGGC
TTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTAGCCTTAAGCAA
TCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAAAAAGCGAGTCC
TGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGCATGTCGGTCAC
TTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTGCTGGAGTTCCT
GCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTGGGGAACACAGT
TTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCAACTACCTAAAT
GAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAGGAATCCAAGAA
GCGATTCGATGAAGATGAGGAGTTCAAAAAACGTGCCTACAGTCGAGTGG
TTTCATTGCAGAAAGGTGTGCCGAACTCCATTAAGGCGTGGGAGCTAATT
TGCAATGTGTCGCGAAAGGAGTTCCAAACGATCTACGAACGATTAGATAT
TAGCGTCAAGGAACGGGGGGAATCGTTCTACCAATCACGTATGCTGTCCG
TTGTGGAATACTTGCGAGGCAAGGGTCTGCTGGAAGTGGATGAAGGACGC
GAGATCATGTGGCCAGACGATACGAAAACTGGCATACCTCTGACAATCGT
GAAATCGGATGGCGGCTTTACCTATGATACCTCTGACATGGCAGCCATTC
GCCATCGCTTGGAGGAGGAGCTTTGCGATTGGATCATCTATGTGGTCGAC
TCCGGCCAAAGCACGCATTTTAATACCATATTCAAAGCTGCCGAACGATC
TGCTATCCTAAATCCACTCAGCCATCGTGTTGACCACGTACAGTTTGGCG
TCGTTCTGGGCGAGGATGGCAAGAAGTTTAAGACTCGATCGGGTGATACG
GTTAAGCTGTCCGATTTGCTGGATGAGGGAATGAAGCGATCCCTGCAGCA
ATTGGAGAGTCGTGGCCGCGATAAGGTCCTCACGCCACAGGAACTGAAGG
ACGCCCAAGAGTCGCTGGCATATGGATGCATTAAGTATTCGGATTTATGT
CACAACCGGATCAGCGACTATATATTTTCGTTCGATAAGATGCTTGAGGA
TCGCGGCAACACTGCGGTGTACTTACTTTACACCTACACACGTATTTGCT
CCATTGCACGAAACTCTGGCGAAGATTTCACCAATTTACCCGAAATACTG
AAGAAGACCAACATTGTGTTGGACCACGAAAAGGAATGGAAGCTGGCTAA
GACTCTACTGAAACTCCACGACATACTCATCAAGTGCTCAAAGGAACTTT
TCCTGCACTTCCTGTGCGAGTTTTGCTTCGAGGTGTGCACAGTGTTCACC
GAATTCTATGACTCTTGTTATTGCATCGAAAAGAACAAACAAGGCGATAT
TATTGGGGTCAATCATAGCCGAATTCTATTGTGCGAGGCAACTGCGGCTG
TGTTGCGCCAATGCTTTTATATACTAGGCCTTAAACCAGTTTCGAAAATG
TAAAAAGTTCTACTACTGACATCATGTGTACGCGAATAAAATGAAACATT
TTATAAAAGTAAAATTATATACCTCGAAAAAAAAAAAAAAA

RE02962.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-arg-RA 2329 Aats-arg-RA 116..2245 1..2130 10620 99.9 Plus
Aats-arg.a 2083 Aats-arg.a 48..2081 97..2130 10155 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15731611..15732832 2124..903 6050 99.7 Minus
chrX 22417052 chrX 15733283..15733631 573..225 1745 100 Minus
chrX 22417052 chrX 15732895..15733228 903..570 1655 99.7 Minus
chrX 22417052 chrX 15733693..15733822 226..97 650 100 Minus
chrX 22417052 chrX 15733879..15733976 98..1 475 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:26:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15841765..15842992 2130..903 6125 99.9 Minus
X 23542271 X 15843443..15843791 573..225 1745 100 Minus
X 23542271 X 15843055..15843388 903..570 1655 99.7 Minus
X 23542271 X 15843853..15843982 226..97 650 100 Minus
X 23542271 X 15844039..15844136 98..1 475 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15849863..15851090 2130..903 6125 99.9 Minus
X 23527363 X 15851541..15851889 573..225 1745 100 Minus
X 23527363 X 15851153..15851486 903..570 1655 99.7 Minus
X 23527363 X 15851951..15852080 226..97 650 100 Minus
X 23527363 X 15852137..15852234 98..1 475 98.9 Minus
Blast to na_te.dros performed on 2019-03-16 02:41:16 has no hits.

RE02962.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:42:01 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15731609..15732831 904..2126 99 <- Minus
chrX 15732895..15733224 574..903 100 <- Minus
chrX 15733283..15733629 227..573 100 <- Minus
chrX 15733693..15733821 98..226 100 <- Minus
chrX 15733880..15733976 1..97 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:47:15 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..1998 56..2053 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:37 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..1998 56..2053 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:05 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..1998 56..2053 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:15 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..1998 56..2053 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:16:58 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..1998 56..2053 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:49 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..2126 1..2126 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:37 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..2126 1..2126 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:05 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 10..2135 1..2126 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:15 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 1..2126 1..2126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:16:58 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-arg-RA 10..2135 1..2126 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:01 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
X 15841769..15842991 904..2126 99 <- Minus
X 15843055..15843384 574..903 100 <- Minus
X 15843443..15843789 227..573 100 <- Minus
X 15843853..15843981 98..226 100 <- Minus
X 15844040..15844136 1..97 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:01 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
X 15841769..15842991 904..2126 99 <- Minus
X 15843055..15843384 574..903 100 <- Minus
X 15843443..15843789 227..573 100 <- Minus
X 15843853..15843981 98..226 100 <- Minus
X 15844040..15844136 1..97 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:01 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
X 15841769..15842991 904..2126 99 <- Minus
X 15843055..15843384 574..903 100 <- Minus
X 15843443..15843789 227..573 100 <- Minus
X 15843853..15843981 98..226 100 <- Minus
X 15844040..15844136 1..97 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:05 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15735802..15737024 904..2126 99 <- Minus
arm_X 15737088..15737417 574..903 100 <- Minus
arm_X 15737476..15737822 227..573 100 <- Minus
arm_X 15737886..15738014 98..226 100 <- Minus
arm_X 15738073..15738169 1..97 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:08 Download gff for RE02962.complete
Subject Subject Range Query Range Percent Splice Strand
X 15852138..15852234 1..97 98   Minus
X 15851951..15852079 98..226 100 <- Minus
X 15851153..15851482 574..903 100 <- Minus
X 15851541..15851887 227..573 100 <- Minus
X 15849867..15851089 904..2126 99 <- Minus

RE02962.hyp Sequence

Translation from 55 to 2052

> RE02962.hyp
MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN
RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD
TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC
PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV
DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG
MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS
LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV
EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH
RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV
LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA
QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI
ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL
HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL
RQCFYILGLKPVSKM*

RE02962.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-arg-PA 665 CG9020-PA 1..665 1..665 3429 100 Plus
CG10092-PB 594 CG10092-PB 129..594 190..665 462 29.2 Plus
CG10092-PA 594 CG10092-PA 129..594 190..665 462 29.2 Plus

RE02962.pep Sequence

Translation from 55 to 2052

> RE02962.pep
MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN
RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD
TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC
PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV
DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG
MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS
LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV
EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH
RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV
LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA
QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI
ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL
HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL
RQCFYILGLKPVSKM*

RE02962.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16459-PA 666 GF16459-PA 3..666 4..665 2910 82.6 Plus
Dana\GF18177-PA 570 GF18177-PA 94..570 180..665 474 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19367-PA 664 GG19367-PA 1..664 1..665 3365 95 Plus
Dere\GG14252-PA 572 GG14252-PA 103..572 186..665 451 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12545-PA 668 GH12545-PA 3..668 2..665 2616 73.6 Plus
Dgri\GH18567-PA 571 GH18567-PA 112..571 195..665 458 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
ArgRS-PA 665 CG9020-PA 1..665 1..665 3429 100 Plus
ArgRS-m-PB 594 CG10092-PB 129..594 190..665 462 29.2 Plus
ArgRS-m-PA 594 CG10092-PA 129..594 190..665 462 29.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14172-PA 271 GI14172-PA 1..271 395..665 1224 81.9 Plus
Dmoj\GI21379-PA 212 GI21379-PA 8..212 78..283 838 73.8 Plus
Dmoj\GI24765-PA 571 GI24765-PA 112..571 195..665 456 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14083-PA 664 GL14083-PA 1..664 1..665 2785 75.9 Plus
Dper\GL12462-PA 572 GL12462-PA 4..572 87..665 483 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24005-PA 282 GA24005-PA 1..282 1..283 1034 68.3 Plus
Dpse\GA10066-PA 572 GA10066-PA 4..572 87..665 480 28.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22521-PA 665 GM22521-PA 1..665 1..665 3489 98 Plus
Dsec\GM22602-PA 178 GM22602-PA 35..144 474..583 580 98.2 Plus
Dsec\GM21064-PA 499 GM21064-PA 122..499 277..665 251 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24677-PA 665 GD24677-PA 1..665 1..665 3498 98.3 Plus
Dsim\GD17808-PA 137 GD17808-PA 1..137 529..665 727 97.8 Plus
Dsim\GD17255-PA 100 GD17255-PA 1..99 529..627 521 98 Plus
Dsim\GD19955-PA 572 GD19955-PA 103..572 186..665 458 29 Plus
Dsim\GD17254-PA 71 GD17254-PA 35..71 474..510 184 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14045-PA 594 GJ14045-PA 5..594 75..665 2584 78.5 Plus
Dvir\GJ22551-PA 571 GJ22551-PA 102..571 185..665 463 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15297-PA 649 GK15297-PA 1..640 1..633 2580 74.1 Plus
Dwil\GK12028-PA 575 GK12028-PA 115..575 195..665 466 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16015-PA 664 GE16015-PA 1..664 1..665 3406 95.8 Plus
Dyak\GE24948-PA 570 GE24948-PA 101..570 186..665 437 29.4 Plus