Clone RE03006 Report

Search the DGRC for RE03006

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:30
Well:6
Vector:pFlc-1
Associated Gene/TranscriptKmn1-RA
Protein status:RE03006.pep: gold
Preliminary Size:761
Sequenced Size:1017

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1558 2001-12-14 Blastp of sequenced clone
CG1558 2002-01-01 Sim4 clustering to Release 2
CG1558 2003-01-01 Sim4 clustering to Release 3
Kmn1 2008-04-29 Release 5.5 accounting
Kmn1 2008-08-15 Release 5.9 accounting
Kmn1 2008-12-18 5.12 accounting

Clone Sequence Records

RE03006.complete Sequence

1017 bp (1017 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070925

> RE03006.complete
AAGCGTTTACGGATTTAAAAACTGAAAACAAACGAAGCGACGCGATGGAG
CCAGCCGAAAGTCCAGAAAAATTAATGAAATTCGTACGCCGCAGTGACGT
ACTGGAATACGTGGGCAACACGAGTGCCGTCGATCTATCGAGCGGTGATC
TCTCCGACATCGATCTCAAGGACGTGCCGGCCCAACTGGAGGCCACTTTG
AAACCGCGTCGCTATGAAGCAAGCACTTTGTTTAACATTGACCTGGACGA
TATCTGGGATCCTAGCTGTCAGGAGGACGAGGTGCAGCAGTACAAGGAGC
GCGCCCAGAAGGAGCAGCAAAAGTTCTTCGACTTTGTAATGCATGCGGCA
CTGGACACGGACAATCGCAAGGTTAGCTTCAAGCCAAACAAGGAGCAGCA
GCGTTACCTAGATCAGGGACCCAATTTGCAAAACTTCGTGCGAAGCTCGT
TGGCTTTCACAAACGCGGCCATCCGATTTCAGGCGGAGCACGAGGACATG
ATGGAGCTGCAGTGCAATATGGACGATCACTACCTATTCATGCGGAACAC
CATGATCAACAACGCTATACACCAGAATATGGCCAACCAACGGTGACCCT
AAGCTATGCATAAATATACATATGTGAATTGTAGATATTGATAAATTAAA
TTAAGACTCAGAGATTGTAAGACGGTTTGCTTTTGGCTTATACAGTATAA
TTCGCTTAGCTGCCTCGAGTACTTTGCACAATGCCTCGATGCAGGTAACT
TAAAAATGCAGCTAACTTAATTTTTTTTTTCTATTTTCTATTTTCTATTC
ACACAAAAAAATGGAAAAATAATGCAGATATCTTGCCGATGCAGCTAACT
ATCGATGCAGCTAAGCGAATTATACTGTATTTATTTCTACCCTAATATGT
AACTCCCTAAGTTGCACTTCTGATGATGGCTGCCTTTAAGTCTGACCGAA
AGAAATGAAAACCGATCAAACGTCTTGAAAACATTGTCTGTATGTAAACT
GAAAAAAAAAAAAAAAA

RE03006.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Kmn1-RA 1086 Kmn1-RA 69..1072 1..1003 4980 99.9 Plus
Madm.b 3556 Madm.b 2725..2922 884..688 935 98.9 Minus
Madm.a 3687 Madm.a 2725..2922 884..688 935 98.9 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11462582..11463331 1001..253 3700 99.9 Minus
chrX 22417052 chrX 11463390..11463641 252..1 1260 100 Minus
chr3R 27901430 chr3R 20417939..20418128 880..691 950 100 Minus
chr3R 27901430 chr3R 1753233..1753421 879..691 945 100 Minus
chr3R 27901430 chr3R 1571708..1571905 884..688 925 99 Minus
chrX 22417052 chrX 16947492..16947688 689..884 920 99 Plus
chr3L 24539361 chr3L 1740462..1740658 884..689 920 99 Minus
chr3L 24539361 chr3L 3833206..3833408 889..688 920 98 Minus
chrX 22417052 chrX 2951817..2952009 688..879 915 99.5 Plus
chr3R 27901430 chr3R 5187632..5187824 879..688 915 99.5 Minus
chr2R 21145070 chr2R 7021638..7021830 881..690 915 99.5 Minus
chr2L 23010047 chr2L 3388287..3388479 880..689 915 99.5 Minus
chr2L 23010047 chr2L 17166278..17166476 885..688 915 98.5 Minus
chrX 22417052 chrX 3735741..3735932 689..879 910 99.5 Plus
chr3R 27901430 chr3R 3181385..3181576 689..879 910 99.5 Plus
chr3R 27901430 chr3R 10904467..10904658 881..691 910 99.5 Minus
chrX 22417052 chrX 5776211..5776401 879..690 905 99.5 Minus
chrX 22417052 chrX 14480045..14480235 880..691 905 99.5 Minus
chr3R 27901430 chr3R 1634811..1635001 690..879 905 99.5 Plus
chr3L 24539361 chr3L 5902650..5902840 879..690 905 99.5 Minus
chr2L 23010047 chr2L 12727686..12727876 690..879 905 99.5 Plus
chr2R 21145070 chr2R 13671211..13671403 689..880 900 99 Plus
chr2L 23010047 chr2L 4952664..4952853 879..691 900 99.5 Minus
chrX 22417052 chrX 19269027..19269214 693..879 890 99.5 Plus
chr2L 23010047 chr2L 19761382..19761572 691..879 890 99 Plus
chrX 22417052 chrX 5776566..5776754 876..689 880 98.9 Minus
chr2R 21145070 chr2R 4610394..4610578 879..696 875 99.5 Minus
chr2L 23010047 chr2L 20370658..20370842 879..696 875 99.5 Minus
chr3L 24539361 chr3L 23884940..23885123 690..879 825 96.8 Plus
chr3L 24539361 chr3L 3051180..3051370 881..689 735 93.3 Minus
chrX 22417052 chrX 15311867..15311959 688..780 465 100 Plus
chr3R 27901430 chr3R 25584033..25584125 780..688 465 100 Minus
chr3L 24539361 chr3L 11855378..11855470 688..780 465 100 Plus
chr2L 23010047 chr2L 17910637..17910728 689..780 460 100 Plus
chr2L 23010047 chr2L 17912676..17912770 790..884 460 98.9 Plus
chr2L 23010047 chr2L 20151503..20151594 689..780 460 100 Plus
chr2L 23010047 chr2L 21539344..21539435 790..881 460 100 Plus
chrU 10048995 chrU 6120676..6120767 790..881 460 100 Plus
chrX 22417052 chrX 15313240..15313333 790..883 455 98.9 Plus
chr3R 27901430 chr3R 8961024..8961117 883..790 455 98.9 Minus
chr3R 27901430 chr3R 8963062..8963152 780..690 455 100 Minus
chr3R 27901430 chr3R 18058373..18058463 690..780 455 100 Plus
chr2R 21145070 chr2R 649581..649671 690..780 455 100 Plus
chr2R 21145070 chr2R 7361210..7361300 780..690 455 100 Minus
chr2R 21145070 chr2R 13670612..13670702 780..690 455 100 Minus
chr2L 23010047 chr2L 2935048..2935138 790..880 455 100 Plus
chr2L 23010047 chr2L 20153542..20153632 790..880 455 100 Plus
chr2L 23010047 chr2L 20155146..20155236 790..880 455 100 Plus
chr2L 23010047 chr2L 20156750..20156840 790..880 455 100 Plus
chrU 10048995 chrU 3424466..3424556 780..690 455 100 Minus
chrXHet 204175 chrXHet 16513..16603 790..880 455 100 Plus
chr3R 27901430 chr3R 7848381..7848470 691..780 450 100 Plus
chr3R 27901430 chr3R 7850417..7850506 790..879 450 100 Plus
chr3R 27901430 chr3R 18059552..18059641 790..879 450 100 Plus
chr3L 24539361 chr3L 27652..27741 879..790 450 100 Minus
chr3L 24539361 chr3L 28713..28802 780..691 450 100 Minus
chr3L 24539361 chr3L 20247504..20247593 780..691 450 100 Minus
chr2R 21145070 chr2R 650987..651076 790..879 450 100 Plus
chr2R 21145070 chr2R 13669550..13669639 879..790 450 100 Minus
chr2L 23010047 chr2L 7959432..7959521 780..691 450 100 Minus
chr2L 23010047 chr2L 21537959..21538048 691..780 450 100 Plus
chr2L 23010047 chr2L 2933012..2933101 691..780 450 100 Plus
chr2L 23010047 chr2L 7958162..7958251 879..790 450 100 Minus
chrU 10048995 chrU 2893690..2893779 879..790 450 100 Minus
chrU 10048995 chrU 3423225..3423314 879..790 450 100 Minus
chrU 10048995 chrU 4180504..4180593 780..691 450 100 Minus
chrU 10048995 chrU 4817498..4817587 691..780 450 100 Plus
chrU 10048995 chrU 5547310..5547402 688..780 450 98.9 Plus
chrU 10048995 chrU 6119809..6119898 691..780 450 100 Plus
chrU 10048995 chrU 9459863..9459952 790..879 450 100 Plus
chrXHet 204175 chrXHet 15253..15342 691..780 450 100 Plus
chr2R 21145070 chr2R 7360155..7360242 877..790 440 100 Minus
chr3L 24539361 chr3L 11856535..11856621 790..876 435 100 Plus
chr3L 24539361 chr3L 20246525..20246611 876..790 435 100 Minus
chr3R 27901430 chr3R 25582972..25583061 880..790 405 98.9 Minus
chrU 10048995 chrU 2895727..2895777 780..730 240 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:26:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11571381..11572132 1003..253 3710 99.9 Minus
X 23542271 X 11572191..11572442 252..1 1260 100 Minus
3R 32079331 3R 24594687..24594876 880..691 950 100 Minus
3R 32079331 3R 5927612..5927800 879..691 945 100 Minus
2L 23513712 2L 17167610..17167808 885..688 930 99 Minus
3R 32079331 3R 5746061..5746258 884..688 925 99 Minus
X 23542271 X 17057985..17058181 689..884 920 99 Plus
3L 28110227 3L 1740902..1741098 884..689 920 99 Minus
3L 28110227 3L 3833780..3833982 889..688 920 98 Minus
X 23542271 X 3058069..3058261 688..879 915 99.5 Plus
3R 32079331 3R 9361867..9362059 879..688 915 99.5 Minus
2L 23513712 2L 3388650..3388842 880..689 915 99.5 Minus
2R 25286936 2R 11134161..11134353 881..690 915 99.5 Minus
X 23542271 X 3842371..3842562 689..879 910 99.5 Plus
X 23542271 X 5884213..5884404 879..689 910 99.5 Minus
3R 32079331 3R 7355259..7355450 689..879 910 99.5 Plus
3R 32079331 3R 15079857..15080048 881..691 910 99.5 Minus
X 23542271 X 5883861..5884051 879..690 905 99.5 Minus
X 23542271 X 14589727..14589917 880..691 905 99.5 Minus
X 23542271 X 19380207..19380397 690..879 905 99.5 Plus
3R 32079331 3R 5809164..5809354 690..879 905 99.5 Plus
2L 23513712 2L 12728972..12729162 690..879 905 99.5 Plus
3L 28110227 3L 5910084..5910274 879..690 905 99.5 Minus
2L 23513712 2L 4953564..4953753 879..691 900 99.5 Minus
2L 23513712 2L 20372280..20372469 879..691 900 99.5 Minus
2R 25286936 2R 8722815..8723004 879..691 900 99.5 Minus
2R 25286936 2R 17784075..17784267 689..880 900 99 Plus
2L 23513712 2L 19762860..19763050 691..879 875 98.4 Plus
3L 28110227 3L 23896037..23896220 690..879 825 96.8 Plus
3L 28110227 3L 3051798..3051988 881..689 735 93.3 Minus
3R 32079331 3R 13135875..13135968 883..790 470 100 Minus
3R 32079331 3R 29761473..29761565 780..688 465 100 Minus
3L 28110227 3L 11864602..11864694 688..780 465 100 Plus
X 23542271 X 15421970..15422061 689..780 460 100 Plus
2L 23513712 2L 17912008..17912099 689..780 460 100 Plus
2L 23513712 2L 17914047..17914141 790..884 460 98.9 Plus
2L 23513712 2L 20153105..20153196 689..780 460 100 Plus
2L 23513712 2L 21540843..21540934 790..881 460 100 Plus
3CEN 744266 3CEN 560283..560374 790..881 460 100 Plus
X 23542271 X 15423342..15423435 790..883 455 98.9 Plus
X 23542271 X 23037694..23037784 790..880 455 100 Plus
3R 32079331 3R 13137913..13138003 780..690 455 100 Minus
3R 32079331 3R 22234734..22234824 690..780 455 100 Plus
2L 23513712 2L 2935388..2935478 790..880 455 100 Plus
2L 23513712 2L 20155144..20155234 790..880 455 100 Plus
2L 23513712 2L 20156748..20156838 790..880 455 100 Plus
2L 23513712 2L 20158352..20158442 790..880 455 100 Plus
3L 28110227 3L 24618003..24618093 790..880 455 100 Plus
2R 25286936 2R 17357..17447 780..690 455 100 Minus
2R 25286936 2R 4761997..4762087 690..780 455 100 Plus
2R 25286936 2R 11473756..11473846 780..690 455 100 Minus
2R 25286936 2R 17783476..17783566 780..690 455 100 Minus
X 23542271 X 23036434..23036523 691..780 450 100 Plus
3R 32079331 3R 12022936..12023025 691..780 450 100 Plus
3R 32079331 3R 12024972..12025061 790..879 450 100 Plus
3R 32079331 3R 22235913..22236002 790..879 450 100 Plus
2L 23513712 2L 2933352..2933441 691..780 450 100 Plus
2L 23513712 2L 7959093..7959182 879..790 450 100 Minus
2L 23513712 2L 7960363..7960452 780..691 450 100 Minus
2L 23513712 2L 21539458..21539547 691..780 450 100 Plus
3L 28110227 3L 27652..27741 879..790 450 100 Minus
3L 28110227 3L 28713..28802 780..691 450 100 Minus
3L 28110227 3L 11865759..11865848 790..879 450 100 Plus
3L 28110227 3L 20258364..20258453 780..691 450 100 Minus
3L 28110227 3L 24616743..24616832 691..780 450 100 Plus
2R 25286936 2R 16116..16205 879..790 450 100 Minus
2R 25286936 2R 4763403..4763492 790..879 450 100 Plus
2R 25286936 2R 11472700..11472789 879..790 450 100 Minus
2R 25286936 2R 17782414..17782503 879..790 450 100 Minus
3CEN 744266 3CEN 559416..559505 691..780 450 100 Plus
U 3151297 U 1344970..1345059 790..879 450 100 Plus
U 3151297 U 2877246..2877338 688..780 450 98.9 Plus
Xmm 1049845 Xmm 518049..518138 780..691 450 100 Minus
3L 28110227 3L 20257385..20257471 876..790 435 100 Minus
3R 32079331 3R 29760412..29760501 880..790 405 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11579479..11580230 1003..253 3720 99.8 Minus
X 23527363 X 11580289..11580540 252..1 1260 100 Minus
3R 31820162 3R 24335518..24335707 880..691 950 100 Minus
3R 31820162 3R 5668443..5668631 879..691 945 100 Minus
2L 23513712 2L 17167610..17167808 885..688 940 98.9 Minus
3R 31820162 3R 5486892..5487089 884..688 935 98.9 Minus
X 23527363 X 17066083..17066279 689..884 930 98.9 Plus
3L 28103327 3L 1740902..1741098 884..689 930 98.9 Minus
3L 28103327 3L 3833780..3833982 889..688 930 98 Minus
X 23527363 X 3066167..3066359 688..879 925 99.4 Plus
2L 23513712 2L 3388650..3388842 880..689 925 99.4 Minus
3R 31820162 3R 9102698..9102890 879..688 925 99.4 Minus
2R 25260384 2R 11135360..11135552 881..690 925 99.4 Minus
X 23527363 X 3850469..3850660 689..879 920 99.4 Plus
X 23527363 X 5892311..5892502 879..689 920 99.4 Minus
3R 31820162 3R 7096090..7096281 689..879 920 99.4 Plus
3R 31820162 3R 14820688..14820879 881..691 920 99.4 Minus
X 23527363 X 19388305..19388495 690..879 915 99.4 Plus
X 23527363 X 14597825..14598015 880..691 915 99.4 Minus
X 23527363 X 5891959..5892149 879..690 915 99.4 Minus
2L 23513712 2L 12728972..12729162 690..879 915 99.4 Plus
3R 31820162 3R 5549995..5550185 690..879 915 99.4 Plus
3L 28103327 3L 5903184..5903374 879..690 915 99.4 Minus
2L 23513712 2L 20372280..20372469 879..691 910 99.4 Minus
2L 23513712 2L 4953564..4953753 879..691 910 99.4 Minus
2R 25260384 2R 17785274..17785466 689..880 910 98.9 Plus
2R 25260384 2R 8724014..8724203 879..691 910 99.4 Minus
2L 23513712 2L 19762860..19763050 691..879 885 98.4 Plus
3L 28103327 3L 23889137..23889320 690..879 835 96.8 Plus
3R 31820162 3R 12876706..12876799 883..790 470 100 Minus
3R 31820162 3R 29502304..29502396 780..688 465 100 Minus
3L 28103327 3L 11857702..11857794 688..780 465 100 Plus
X 23527363 X 15430068..15430159 689..780 460 100 Plus
2L 23513712 2L 17912008..17912099 689..780 460 100 Plus
2L 23513712 2L 17914047..17914141 790..884 460 98.9 Plus
2L 23513712 2L 20153105..20153196 689..780 460 100 Plus
2L 23513712 2L 21540843..21540934 790..881 460 100 Plus
X 23527363 X 15431440..15431533 790..883 455 98.9 Plus
X 23527363 X 23022786..23022876 790..880 455 100 Plus
2L 23513712 2L 20158352..20158442 790..880 455 100 Plus
2L 23513712 2L 20156748..20156838 790..880 455 100 Plus
2L 23513712 2L 20155144..20155234 790..880 455 100 Plus
2L 23513712 2L 2935388..2935478 790..880 455 100 Plus
3R 31820162 3R 21975565..21975655 690..780 455 100 Plus
3R 31820162 3R 12878744..12878834 780..690 455 100 Minus
3L 28103327 3L 24611103..24611193 790..880 455 100 Plus
2R 25260384 2R 4763196..4763286 690..780 455 100 Plus
2R 25260384 2R 17784675..17784765 780..690 455 100 Minus
2R 25260384 2R 11474955..11475045 780..690 455 100 Minus
2R 25260384 2R 17357..17447 780..690 455 100 Minus
X 23527363 X 23021526..23021615 691..780 450 100 Plus
2L 23513712 2L 7960363..7960452 780..691 450 100 Minus
2L 23513712 2L 21539458..21539547 691..780 450 100 Plus
2L 23513712 2L 2933352..2933441 691..780 450 100 Plus
2L 23513712 2L 7959093..7959182 879..790 450 100 Minus
3R 31820162 3R 21976744..21976833 790..879 450 100 Plus
3R 31820162 3R 11765803..11765892 790..879 450 100 Plus
3R 31820162 3R 11763767..11763856 691..780 450 100 Plus
3L 28103327 3L 11858859..11858948 790..879 450 100 Plus
3L 28103327 3L 24609843..24609932 691..780 450 100 Plus
3L 28103327 3L 28713..28802 780..691 450 100 Minus
3L 28103327 3L 27652..27741 879..790 450 100 Minus
3L 28103327 3L 20251464..20251553 780..691 450 100 Minus
2R 25260384 2R 4764602..4764691 790..879 450 100 Plus
2R 25260384 2R 17783613..17783702 879..790 450 100 Minus
2R 25260384 2R 11473899..11473988 879..790 450 100 Minus
2R 25260384 2R 16116..16205 879..790 450 100 Minus
Unimproved_211000022208369_36_854 818 Unimproved_211000022208369_36_854 419..508 780..691 450 100 Minus
3L 28103327 3L 3051897..3051988 780..689 445 98.9 Minus
3L 28103327 3L 20250485..20250571 876..790 435 100 Minus
3L 28103327 3L 3051798..3051882 881..797 425 100 Minus
3R 31820162 3R 29501243..29501332 880..790 415 98.9 Minus
Blast to na_te.dros performed 2019-03-16 03:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 1..117 877..756 446 86.9 Minus
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 2034..2121 780..693 440 100 Minus
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 1..34 693..727 127 88.6 Plus
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 2087..2121 844..877 127 88.6 Plus
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 2008..2075 888..822 121 68.1 Minus

RE03006.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:13 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11463390..11463641 1..252 100   Minus
chrX 11462892..11463331 253..692 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:47:16 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..552 45..596 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:22 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..552 45..596 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:02 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..552 45..596 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:00 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..552 45..596 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:56 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..552 45..596 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:29 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..1002 1..1001 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:22 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..1002 1..1001 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:02 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..1002 1..1001 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:00 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..1002 1..1001 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:56 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
Kmn1-RA 1..1002 1..1001 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:13 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
X 11571383..11572132 253..1001 99 <- Minus
X 11572191..11572442 1..252 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:13 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
X 11571383..11572132 253..1001 99 <- Minus
X 11572191..11572442 1..252 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:13 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
X 11571383..11572132 253..1001 99 <- Minus
X 11572191..11572442 1..252 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:02 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11465416..11466165 253..1001 99 <- Minus
arm_X 11466224..11466475 1..252 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:51 Download gff for RE03006.complete
Subject Subject Range Query Range Percent Splice Strand
X 11579481..11580230 253..1001 99 <- Minus
X 11580289..11580540 1..252 100   Minus

RE03006.hyp Sequence

Translation from 2 to 595

> RE03006.hyp
AFTDLKTENKRSDAMEPAESPEKLMKFVRRSDVLEYVGNTSAVDLSSGDL
SDIDLKDVPAQLEATLKPRRYEASTLFNIDLDDIWDPSCQEDEVQQYKER
AQKEQQKFFDFVMHAALDTDNRKVSFKPNKEQQRYLDQGPNLQNFVRSSL
AFTNAAIRFQAEHEDMMELQCNMDDHYLFMRNTMINNAIHQNMANQR*

RE03006.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Kmn1-PA 183 CG1558-PA 1..183 15..197 954 100 Plus

RE03006.pep Sequence

Translation from 44 to 595

> RE03006.pep
MEPAESPEKLMKFVRRSDVLEYVGNTSAVDLSSGDLSDIDLKDVPAQLEA
TLKPRRYEASTLFNIDLDDIWDPSCQEDEVQQYKERAQKEQQKFFDFVMH
AALDTDNRKVSFKPNKEQQRYLDQGPNLQNFVRSSLAFTNAAIRFQAEHE
DMMELQCNMDDHYLFMRNTMINNAIHQNMANQR*

RE03006.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20365-PA 188 GF20365-PA 18..178 24..180 190 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18849-PA 185 GG18849-PA 1..183 1..183 847 85.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17603-PA 191 GH17603-PA 49..188 46..181 144 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Kmn1-PB 183 CG1558-PB 1..183 1..183 954 100 Plus
Kmn1-PA 183 CG1558-PA 1..183 1..183 954 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16470-PA 187 GI16470-PA 45..182 51..182 136 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26890-PA 188 GL26890-PA 16..179 35..182 301 40.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13825-PA 187 GA13825-PA 15..178 35..182 309 42.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13064-PA 183 GM13064-PA 1..183 1..183 926 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15985-PA 183 GD15985-PA 1..183 1..183 923 94.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17291-PA 185 GE17291-PA 1..183 1..183 871 88 Plus