Clone RE03010 Report

Search the DGRC for RE03010

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:30
Well:10
Vector:pFlc-1
Associated Gene/Transcriptfng-RA
Protein status:RE03010.pep: gold
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10580 2001-12-14 Blastp of sequenced clone
CG10580 2002-01-01 Sim4 clustering to Release 2
CG10580 2003-01-01 Sim4 clustering to Release 3
fng 2008-04-29 Release 5.5 accounting
fng 2008-08-15 Release 5.9 accounting
fng 2008-12-18 5.12 accounting

Clone Sequence Records

RE03010.complete Sequence

1980 bp (1980 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070927

> RE03010.complete
AGTGGCTTTTCAAGCTTGCCACAAGCAAGACGTCAGTGCGCGCGTGCTGC
GATATCGAAATCGAAATAAACTTAAAAGATATCGTAATTTCAGAAATCGA
GCAGAATTCATACGATCCAGGAAAAGAACCAGCTAATATTGGAATATAAA
ACCTACCCAGTGATCAAATCGGCGGTGCTTCAATGTGCGCGTAGTGGTCC
GTAACCGTATGATGAGCCTGACTGTGCTCTCGCCACCGCAACGTTTTAAG
CGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTATATGACCCT
ACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGTGCCGCACA
GCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATCGCGACCAG
CTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCGGGGGCTGG
AGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGATATACGCA
GCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGGCCACGCTG
CTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTCCGCGATCT
GTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCACCGAGTTGG
ATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGG
CTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGATCAGACCTG
GTTCTTCACGGACACCGATGATCACTACTACCAGGAGAAGACAAAGGGCC
ATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGGCGCTTTGC
TGCAAAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGCAAAAAGTG
GTTCTGTCACTTCGACGATGACAACTATGTCAATGTGCCGAGGCTGGTCA
AACTGCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGGGCAAGCCG
AGCATCTCGTCGCCGCTGGAGATCCACTTGGACAGCAAGAACACGACAAC
AAACAAGAAGATAACCTTCTGGTTCGCCACTGGCGGCGCTGGCTTCTGCC
TCAGTCGAGCCCTGACTTTAAAAATGCTACCCATAGCAGGTGGTGGCAAG
TTTATCAGCATTGGCGACAAGATACGTTTTCCGGATGATGTCACAATGGG
TTTTATTATTGAACACCTTCTGAAAGTTCCTCTAACCGTGGTGGACAACT
TCCACTCGCATTTGGAGCCCATGGAGTTCATACGCCAGGATACGTTCCAG
GACCAGGTGTCCTTCAGCTATGCCCACATGAAAAACCAGTGGAACGTGAT
CAAGGTGGACGGCTTCGATATGAAAACCGATCCCAAGCGCTTCTACTCCC
TGCACTGCCAGCTTTTCCCCTACTTCAGCTTCTGCCCGCCCAGATGAACT
GGTTGATCCCGATCCGAGGTCCCTGGGGATCCTATTTGGCTGTTGCAGGC
GCACGTCTGCACTGGGTCGGTTGTGAACCGCTGGGGCAGGCGTCAAAATC
AAATCTCGCCACTGTGATTTAACATTAAGTTTATAGTATACGAGCAACGA
AAGGTTCTTTGTATATATATATGTAGCAATACGCTGGACAGATGTGCTTC
CTAATGGTATAAGTAATACTGTAGCTGTAGGTCTTGCAATTCCAACACTT
CCAAGTGCTTCCCTATAGCGTTACACGCGATTCTTCCAATCGGCTTAGTG
CGTAGTTAAATTAATGGTCTAGTCTACGTTTAAGTTATCTTAGATTCAGA
GAGACCGCTTGACCCTCTGCTGTGTAATACTGTAATGCAGTCTAATGTTT
GCCTAATCTAGCAATATGCATGTATATAGTAGATTAATTAACTAAGCAAT
GTTTAAACCATTTTGTTAATTTTTAGTTTGCTTGAATAAAACAGAATATT
TTATTGAAAAAAAAAAAAAAAAAAAAAAAA

RE03010.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
fng-RA 1977 fng-RA 14..1974 1..1961 9790 99.9 Plus
fng.a 1940 fng.a 70..1937 94..1961 9340 100 Plus
fng.a 1940 fng.a 39..69 1..31 140 96.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20914895..20915640 1956..1211 3730 100 Minus
chr3L 24539361 chr3L 20932570..20932974 745..341 2025 100 Minus
chr3L 24539361 chr3L 20938171..20938513 343..1 1700 99.7 Minus
chr3L 24539361 chr3L 20915703..20915877 1211..1037 875 100 Minus
chr3L 24539361 chr3L 20916713..20916851 1036..898 695 100 Minus
chr3L 24539361 chr3L 20924417..20924521 899..795 525 100 Minus
chr3L 24539361 chr3L 20925672..20925723 794..743 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:26:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20925886..20926636 1961..1211 3755 100 Minus
3L 28110227 3L 20943564..20943968 745..341 2025 100 Minus
3L 28110227 3L 20949167..20949509 343..1 1700 99.7 Minus
3L 28110227 3L 20926699..20926873 1211..1037 875 100 Minus
3L 28110227 3L 20927709..20927847 1036..898 695 100 Minus
3L 28110227 3L 20935411..20935515 899..795 525 100 Minus
3L 28110227 3L 20936666..20936717 794..743 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20918986..20919736 1961..1211 3755 100 Minus
3L 28103327 3L 20936664..20937068 745..341 2025 100 Minus
3L 28103327 3L 20942267..20942609 343..1 1700 99.7 Minus
3L 28103327 3L 20919799..20919973 1211..1037 875 100 Minus
3L 28103327 3L 20920809..20920947 1036..898 695 100 Minus
3L 28103327 3L 20928511..20928615 899..795 525 100 Minus
3L 28103327 3L 20929766..20929817 794..743 260 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:05:28 has no hits.

RE03010.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20914895..20915639 1212..1956 100 <- Minus
chr3L 20915703..20915877 1037..1211 100 <- Minus
chr3L 20916713..20916851 898..1036 100 <- Minus
chr3L 20924419..20924521 795..897 100 <- Minus
chr3L 20925672..20925720 746..794 100 <- Minus
chr3L 20932570..20932974 341..745 100 <- Minus
chr3L 20938174..20938513 1..340 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:28 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 209..1447 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:47 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 209..1447 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:26:23 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 209..1447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 209..1447 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:04 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1239 209..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:27 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1956 1..1956 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:47 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1956 1..1956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:26:23 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 4..1959 1..1956 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 1..1956 1..1956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:04 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
fng-RA 4..1959 1..1956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20925891..20926635 1212..1956 100 <- Minus
3L 20926699..20926873 1037..1211 100 <- Minus
3L 20927709..20927847 898..1036 100 <- Minus
3L 20935413..20935515 795..897 100 <- Minus
3L 20936666..20936714 746..794 100 <- Minus
3L 20943564..20943968 341..745 100 <- Minus
3L 20949170..20949509 1..340 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20925891..20926635 1212..1956 100 <- Minus
3L 20926699..20926873 1037..1211 100 <- Minus
3L 20927709..20927847 898..1036 100 <- Minus
3L 20935413..20935515 795..897 100 <- Minus
3L 20936666..20936714 746..794 100 <- Minus
3L 20943564..20943968 341..745 100 <- Minus
3L 20949170..20949509 1..340 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:29 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20925891..20926635 1212..1956 100 <- Minus
3L 20926699..20926873 1037..1211 100 <- Minus
3L 20927709..20927847 898..1036 100 <- Minus
3L 20935413..20935515 795..897 100 <- Minus
3L 20936666..20936714 746..794 100 <- Minus
3L 20943564..20943968 341..745 100 <- Minus
3L 20949170..20949509 1..340 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:26:23 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20936664..20937068 341..745 100 <- Minus
arm_3L 20942270..20942609 1..340 99   Minus
arm_3L 20918991..20919735 1212..1956 100 <- Minus
arm_3L 20919799..20919973 1037..1211 100 <- Minus
arm_3L 20920809..20920947 898..1036 100 <- Minus
arm_3L 20928513..20928615 795..897 100 <- Minus
arm_3L 20929766..20929814 746..794 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:46 Download gff for RE03010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20942270..20942609 1..340 99   Minus
3L 20936664..20937068 341..745 100 <- Minus
3L 20918991..20919735 1212..1956 100 <- Minus
3L 20919799..20919973 1037..1211 100 <- Minus
3L 20920809..20920947 898..1036 100 <- Minus
3L 20928513..20928615 795..897 100 <- Minus
3L 20929766..20929814 746..794 100 <- Minus

RE03010.pep Sequence

Translation from 208 to 1446

> RE03010.pep
MMSLTVLSPPQRFKRILQAMMLAVAVVYMTLLLYQSAYGYPGIQVPHSQV
DALASEAVTTHRDQLLQDYVQSSTPTQPGAGAPAASPTTVIIRKDIRSFN
FSDIEVSERPTATLLTELARRSRNGELLRDLSQRAVTATPQPPVTELDDI
FISVKTTKNYHDTRLALIIKTWFQLARDQTWFFTDTDDHYYQEKTKGHLI
NTKCSQGHFRKALCCKMSAELDVFLESGKKWFCHFDDDNYVNVPRLVKLL
DEYSPSVDWYLGKPSISSPLEIHLDSKNTTTNKKITFWFATGGAGFCLSR
ALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFHS
HLEPMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHC
QLFPYFSFCPPR*

RE03010.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10199-PA 413 GF10199-PA 1..413 1..412 2138 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13275-PA 412 GG13275-PA 1..412 1..412 2219 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15563-PA 430 GH15563-PA 1..430 1..412 1884 85.6 Plus
Dgri\GH22426-PA 206 GH22426-PA 67..157 89..179 440 94.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
fng-PA 412 CG10580-PA 1..412 1..412 2182 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16838-PA 423 GI16838-PA 1..423 1..412 1913 85.8 Plus
Dmoj\GI21894-PA 226 GI21894-PA 1..44 2..45 201 88.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14480-PA 103 GL14480-PA 1..102 277..378 379 75.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10411-PA 429 GA10411-PA 1..429 1..412 2034 90.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22178-PA 412 GM22178-PA 1..412 1..412 2225 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12155-PA 918 GD12155-PA 1..44 1..44 229 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12588-PA 426 GJ12588-PA 1..426 1..412 1886 85 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13485-PA 411 GK13485-PA 1..411 1..412 2008 93.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22371-PA 412 GE22371-PA 1..412 1..412 2219 99.5 Plus

RE03010.hyp Sequence

Translation from 208 to 1446

> RE03010.hyp
MMSLTVLSPPQRFKRILQAMMLAVAVVYMTLLLYQSAYGYPGIQVPHSQV
DALASEAVTTHRDQLLQDYVQSSTPTQPGAGAPAASPTTVIIRKDIRSFN
FSDIEVSERPTATLLTELARRSRNGELLRDLSQRAVTATPQPPVTELDDI
FISVKTTKNYHDTRLALIIKTWFQLARDQTWFFTDTDDHYYQEKTKGHLI
NTKCSQGHFRKALCCKMSAELDVFLESGKKWFCHFDDDNYVNVPRLVKLL
DEYSPSVDWYLGKPSISSPLEIHLDSKNTTTNKKITFWFATGGAGFCLSR
ALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFHS
HLEPMEFIRQDTFQDQVSFSYAHMKNQWNVIKVDGFDMKTDPKRFYSLHC
QLFPYFSFCPPR*

RE03010.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
fng-PA 412 CG10580-PA 1..412 1..412 2182 100 Plus