Clone RE03134 Report

Search the DGRC for RE03134

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:31
Well:34
Vector:pFlc-1
Associated Gene/TranscriptCG2875-RB
Protein status:RE03134.pep: gold
Sequenced Size:1681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2875-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RE03134.complete Sequence

1681 bp assembled on 2010-12-09

GenBank Submission: BT125835.1

> RE03134.complete
AACTCTGTGGAAGCACGCGGCATAAATTCATCTTATTTTTGTTTGTTGCG
CATAATTAATATGTTTTAGCGTACATTTGCCAAACCGAAAATGAAACCCT
TAACTGTGAAAGTGAACGATGACACCGGCAAGTCTTTGGCTAAGAAGAAG
CTGCAGTCCAAGGCCAATTCCCTGCTAAATGCCGAGCAAGTGGACATCAA
AACGCTCAAGGGATTCGTACAATTGCTGAATACGCCCGATAATATGCCAG
CTGGCGAGGTGATGAATACACTCGAGGTGATATTCAAGAATCTGCTAAAA
CGAAAGGCAATCGACGGCACCGAAAAGCAGGGTCTCAAAATCAAAAAACT
GTACGAGGAAACTTGGTTGCTTCTCATCGAGAATCTACTGGTTGACTCGC
AGTGTTCGGTTGCTGTAAAAGTGTGCATGCAGCTCATCAAAGTGGAGGCC
AAGCATCCCATAGCACCCAACAAGGGTTGGCCCACCTACTGGATTCGCGG
CATGCTGGAAACCCTAATAAATAGCGATACAACGCCCACAACAGCGCTGG
CAAACTATGGGAAATATTGCAAAAATCTCGATGTATTAGAGATAACCCTG
ACGCAATTGAAATCCTTAGTGCCCGATGAAGACTTCAAGGACAGCCCCAT
TAAGGCCATGAACTTTCTATCCATTGTAAACCTCTTGGATATGGGAAAGT
CTGTGCTGAGCACGGCAGATTACCACGTGGAAAGCGCCAAAAAGCAGACT
TTTAACTACGAGTTAAATCGCAAAAGACTGAATAATCTCTGGGCGACTAT
TATGGCAAAGGGCAACGAAGTGGACGAGAAACTGCATCGTCAAATACTTG
TGGTGCTTCTGGAGCGCGTAATCAACCACCTGAACGATCCCATCCAGCTG
ACCGACTTTCTCATGGACTCCCTCCATCAGTTTGATGGCCCCATTGCCTT
GCTGGCTCTTCAGGGAATCTTTACGCTTATGCAAAAGCAGAATATCACCT
ATCCGGATGTGTATGAGAAGCTGTACAATATGTTCTATCCACGGATGTTC
CACAACAAGTACAAGGCACGCCTGTTTTACTTGGCCGATATCTTTCTGAC
CTCCACCCATTTGCCCGAGAATCTGGTGGCGGCATTCGTTAAGCGTCTCG
CTCGCCTGGCCCTTCAATCGCCGACCGAAGATGCTGTTATTATGATTCGA
TTCGTTTGCAATCTGCTATTGAGACATACTGGATTGCAGAAATTGATTCG
CGCCAGCCATGCAGTCGATGAGGTCAGCGATCCTTACAATCAAACAGAAA
CGGATCCCGTCAAATCGGAGGCCATAAACAGTTCGCTGTGGGAAATTACG
TTGCTGCAGAAACACGTTGTACCAGAGGTGGCCAATGCGGCACGGTTTAT
TAACTCATCGCTGCCCGTAATGGAATTCGACTTAGCACCCCTCTTGGACA
GAAAGGAATGCAATATTTTCGACGACGAATTACAGTCGAAGGCCAAACAA
TTTGCTCTGAACTACGAACGTCCTACCAATTTGGCTTTGCCTAAAAACCA
ATTCGTGACCAAATACTGGGACCTCATCTAGATTAGTGTTACTATTGCTA
AGTTTAAGCAGGATTAAAGTGCTGCCTGTTATTGGGCTGCTGATGTGCCA
ATTCGGCCTGAAATCAAAAAAAAAAAAAAAA

RE03134.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3466025..3466731 934..228 3520 99.9 Minus
chrX 22417052 chrX 3465432..3465962 1464..934 2655 100 Minus
chrX 22417052 chrX 3466798..3467025 228..1 1140 100 Minus
chrX 22417052 chrX 3465169..3465367 1663..1465 995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572595..3573301 934..228 3535 100 Minus
X 23542271 X 3572003..3572533 1464..934 2655 100 Minus
X 23542271 X 3573368..3573595 228..1 1140 100 Minus
X 23542271 X 3571737..3571939 1667..1465 1000 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3580693..3581399 934..228 3535 100 Minus
X 23527363 X 3580101..3580631 1464..934 2655 100 Minus
X 23527363 X 3581466..3581693 228..1 1140 100 Minus
X 23527363 X 3579835..3580037 1667..1465 1000 99.5 Minus
Blast to na_te.dros performed on 2019-03-17 01:16:01 has no hits.

RE03134.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:16:55 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3465167..3465367 1465..1665 99 <- Minus
chrX 3465432..3465961 935..1464 100 <- Minus
chrX 3466025..3466730 229..934 99 <- Minus
chrX 3466798..3467025 1..228 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-10 09:34:26 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 1..1491 91..1581 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:34:47 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 1..1491 91..1581 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:54:07 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 1..1491 91..1581 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 09:34:25 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 26..1689 1..1665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:34:47 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 28..1691 1..1665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:54:07 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RB 28..1691 1..1665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:16:55 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571739..3571939 1465..1665 99 <- Minus
X 3572003..3572532 935..1464 100 <- Minus
X 3572595..3573300 229..934 100 <- Minus
X 3573368..3573595 1..228 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:16:55 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571739..3571939 1465..1665 99 <- Minus
X 3572003..3572532 935..1464 100 <- Minus
X 3572595..3573300 229..934 100 <- Minus
X 3573368..3573595 1..228 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:16:55 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571739..3571939 1465..1665 99 <- Minus
X 3572003..3572532 935..1464 100 <- Minus
X 3572595..3573300 229..934 100 <- Minus
X 3573368..3573595 1..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:34:47 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3466036..3466565 935..1464 100 <- Minus
arm_X 3465772..3465972 1465..1665 99 <- Minus
arm_X 3466628..3467333 229..934 100 <- Minus
arm_X 3467401..3467628 1..228 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:39 Download gff for RE03134.complete
Subject Subject Range Query Range Percent Splice Strand
X 3579837..3580037 1465..1665 99 <- Minus
X 3580101..3580630 935..1464 100 <- Minus
X 3580693..3581398 229..934 100 <- Minus
X 3581466..3581693 1..228 100   Minus

RE03134.pep Sequence

Translation from 90 to 1580

> RE03134.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLNTPD
NMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENLL
VDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTPT
TALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLLD
MGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLHR
QILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQKQ
NITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAFV
KRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPYN
QTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLAP
LLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*

RE03134.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22308-PA 497 GF22308-PA 1..497 1..496 1962 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18574-PA 497 GG18574-PA 1..497 1..496 2355 89.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12543-PA 513 GH12543-PA 12..513 20..496 1391 55.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PC 496 CG2875-PC 1..496 1..496 2545 100 Plus
CG2875-PB 496 CG2875-PB 1..496 1..496 2545 100 Plus
CG2875-PA 497 CG2875-PA 1..497 1..496 2533 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14900-PA 515 GI14900-PA 29..515 21..496 1524 60.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15786-PA 476 GL15786-PA 9..476 13..496 1294 54 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15496-PA 494 GA15496-PA 9..494 13..496 1404 56.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12718-PA 497 GM12718-PA 1..497 1..496 2448 93.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11637-PA 129 GD11637-PA 1..129 368..496 667 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15331-PA 483 GJ15331-PA 27..483 20..496 1468 59.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25035-PA 530 GK25035-PA 28..530 21..496 1416 57.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16887-PA 497 GE16887-PA 1..497 1..496 2352 89.7 Plus

RE03134.hyp Sequence

Translation from 90 to 1580

> RE03134.hyp
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLNTPD
NMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENLL
VDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTPT
TALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLLD
MGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLHR
QILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQKQ
NITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAFV
KRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPYN
QTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLAP
LLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*

RE03134.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PC 496 CG2875-PC 1..496 1..496 2545 100 Plus
CG2875-PB 496 CG2875-PB 1..496 1..496 2545 100 Plus
CG2875-PA 497 CG2875-PA 1..497 1..496 2533 99.8 Plus