BDGP Sequence Production Resources |
Search the DGRC for RE03440
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 34 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nes-RA |
Protein status: | RE03440.pep: gold |
Preliminary Size: | 2247 |
Sequenced Size: | 1680 |
Gene | Date | Evidence |
---|---|---|
CG9655 | 2001-12-14 | Blastp of sequenced clone |
CG9655 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9655 | 2003-01-01 | Sim4 clustering to Release 3 |
nes | 2008-04-29 | Release 5.5 accounting |
nes | 2008-08-15 | Release 5.9 accounting |
nes | 2008-12-18 | 5.12 accounting |
1680 bp (1680 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070936
> RE03440.complete ACTGCTCCAGTGTTAGTAACTTAACTTTAGATTTAGCATGGCGGAATTCG AGGAGGACTTGCCCCACAATGGCCTGATGGACGGGATCGCCTCGGGAGTG GGCGTTCCCGTGGAGGCACTCCGGCTGCTACTCACCATTCTGGCAGGTTA TCCGGTGGCAGCATTATATCAAAAATTTATTTCTGTTATTGCCGATAAAA CAGTGCATCACATGTTCTTTGCTGGATGCGGCGCTGGATTGTGTTACTTT AACTATGGGCTCGACACATATCACTCACTGATAGCCATCCTAACCACCTA TTTCCTGGTACTCCTCCTGCGAAAGAAGACGCAGATATTTCTGGCCATCA ACTTCGTTTTCCATATGAGCTACCTGCTGCTGGGATATTTCTACACGTCC AGCAATGATTACGATATTCTGTGGACGATGCCTCACTGCATTTTGGTTCT ACGAATGATTGGCTATGGTTTTGACATCACCGACGGCCTGAAAGAGGAGT CGGAATTGTCTAAGGACCAAAAGGAAACTGCGCTGAAGAAACCGCCCTCT CTGCTGGAGCTCCTGGCCTTTTCCTACTTCCCCAGTGGATTTTTGGTTGG ACCGCAGTTCCCATTCCGCCGTTACAAGGCCTTTGTCGATGGCGAATTCC GTCAGCACGAAGGAAATGTGGAAGCTGGCGTTCGTCGCTTTGGAGCTGGT GCGTTCTATCTGATTGTGTGTCAAGTGGGATTGAGATATCTGCCCGATTC GTACTTCCTCACTCCGGAGTTTGCGCAAGTTTCATTCGTCAAGAGGATTT ATTTACTCGGCTTCTGGGCCAAATTCAGTCTGTACAAGTACATATCCTGC TGGCTGCTCACCGAGGGCGCCCTTATTTGCATTGGTCTGACCTACAAGGG CGAGGACAAGAACGGACAGCCCGATTGGTCGGGCTGCAGCAATGTGAAGC TAAAGCTGCTGGAGACTGGGAACACCATGGAGCACTACGTTCAAAGCTTC AATGTAAACACGAACCAATGGGTTGGACAGTATATCTACAAGCGACTTAA GTTCCTCAACAACCGCACAATCAGCTATGGCGCGGCTTTGGGTTTCTTGG CGGTCTGGCACGGATACCACAGCGGTTACTACATGACATTCCTCATGGAA TACATGGTTGTGAGCACCGAAAAACAAATAACCCGCTTCTACACCAAAGT GGTGTTACCCCAGTGGGGCCACATTCTGAACAACTCGGACATCTACAAGC TGCTTTATTTCATCACCCTCAAGTCGTACAACGTTGTGTACATGGGCTGG TGCCTGACCGCATTTGTGTTTCTGAAATACGAGCGCTGGATCGTGGTGTA CGGAGCGGTCAGCTACTATGGATTCACTTTCCTAGTACTCTGGGCTGCCT TCTATCATACCTTCAATCACTTTTTCCGGAGCAGTTCCCGGAAACTAGCT GGAGAGGATCAGAAGTTGCAGGACAGCAACACGGACAAACTCGTAGAGGA AAAGAAACCAGAAGATAAGAAGTCTGAGTAGGATTGAAGCAATAGGAGGA AGTGACTGGCAGTTATCAAAATTTTTGGTTTGCCTTGAGAATTGTTTGGA ATTGGTTTTTTACACATAATCGAATTGTTCTTACTAACCAAATAAGATTA CCAAATAAGAAGCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nes.e | 2838 | nes.e | 633..2270 | 28..1665 | 8175 | 99.9 | Plus |
nes.a | 2244 | nes.a | 143..1778 | 30..1665 | 8165 | 99.9 | Plus |
nes.b | 2271 | nes.b | 170..1805 | 30..1665 | 8165 | 99.9 | Plus |
nes.e | 2838 | nes.e | 191..220 | 1..30 | 150 | 100 | Plus |
nes.a | 2244 | nes.a | 5..34 | 1..30 | 150 | 100 | Plus |
nes.b | 2271 | nes.b | 5..34 | 1..30 | 150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19248001..19249034 | 1177..144 | 5140 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 19247341..19247827 | 1664..1178 | 2435 | 100 | Minus |
chr3L | 24539361 | chr3L | 19249576..19249696 | 148..28 | 605 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19258538..19259571 | 1177..144 | 5155 | 99.9 | Minus |
3L | 28110227 | 3L | 19257877..19258364 | 1665..1178 | 2440 | 100 | Minus |
3L | 28110227 | 3L | 19260113..19260233 | 148..28 | 605 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19251638..19252671 | 1177..144 | 5155 | 99.9 | Minus |
3L | 28103327 | 3L | 19250977..19251464 | 1665..1178 | 2440 | 100 | Minus |
3L | 28103327 | 3L | 19253213..19253333 | 148..28 | 605 | 100 | Minus |
3L | 28103327 | 3L | 19253746..19253775 | 30..1 | 150 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19247341..19247827 | 1178..1664 | 100 | <- | Minus |
chr3L | 19248001..19249031 | 147..1177 | 99 | <- | Minus |
chr3L | 19249578..19249693 | 31..146 | 100 | <- | Minus |
chr3L | 19250109..19250138 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RC | 1..1494 | 38..1531 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RC | 1..1494 | 38..1531 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RA | 1..1494 | 38..1531 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RC | 1..1494 | 38..1531 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RA | 1..1494 | 38..1531 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RB | 5..1668 | 1..1664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RB | 5..1668 | 1..1664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RB | 5..1668 | 1..1664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RB | 5..1668 | 1..1664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nes-RB | 5..1668 | 1..1664 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19257878..19258364 | 1178..1664 | 100 | <- | Minus |
3L | 19258538..19259568 | 147..1177 | 99 | <- | Minus |
3L | 19260115..19260230 | 31..146 | 100 | <- | Minus |
3L | 19260646..19260675 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19257878..19258364 | 1178..1664 | 100 | <- | Minus |
3L | 19258538..19259568 | 147..1177 | 99 | <- | Minus |
3L | 19260115..19260230 | 31..146 | 100 | <- | Minus |
3L | 19260646..19260675 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19257878..19258364 | 1178..1664 | 100 | <- | Minus |
3L | 19258538..19259568 | 147..1177 | 99 | <- | Minus |
3L | 19260115..19260230 | 31..146 | 100 | <- | Minus |
3L | 19260646..19260675 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19250978..19251464 | 1178..1664 | 100 | <- | Minus |
arm_3L | 19251638..19252668 | 147..1177 | 99 | <- | Minus |
arm_3L | 19253215..19253330 | 31..146 | 100 | <- | Minus |
arm_3L | 19253746..19253775 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19250978..19251464 | 1178..1664 | 100 | <- | Minus |
3L | 19251638..19252668 | 147..1177 | 99 | <- | Minus |
3L | 19253215..19253330 | 31..146 | 100 | <- | Minus |
3L | 19253746..19253775 | 1..30 | 100 | Minus |
Translation from 37 to 1530
> RE03440.pep MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10775-PA | 499 | GF10775-PA | 1..485 | 1..485 | 2150 | 80.2 | Plus |
Dana\GF12916-PA | 745 | GF12916-PA | 22..452 | 17..438 | 305 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13418-PA | 497 | GG13418-PA | 1..497 | 1..497 | 2544 | 94.4 | Plus |
Dere\GG25239-PA | 1171 | GG25239-PA | 475..904 | 19..438 | 259 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14422-PA | 468 | GH14422-PA | 7..468 | 17..479 | 1724 | 68.5 | Plus |
Dgri\GH21285-PA | 747 | GH21285-PA | 22..453 | 17..438 | 274 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nes-PC | 497 | CG9655-PC | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PB | 497 | CG9655-PB | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PA | 497 | CG9655-PA | 1..497 | 1..497 | 2656 | 100 | Plus |
oys-PE | 722 | CG18445-PE | 22..453 | 17..438 | 309 | 24.2 | Plus |
oys-PB | 722 | CG18445-PB | 22..453 | 17..438 | 309 | 24.2 | Plus |
oys-PA | 722 | CG18445-PA | 22..453 | 17..438 | 309 | 24.2 | Plus |
oys-PD | 702 | CG18445-PD | 11..433 | 26..438 | 292 | 23.8 | Plus |
frj-PA | 489 | CG9526-PA | 21..467 | 47..476 | 188 | 21.2 | Plus |
frj-PB | 489 | CG9526-PB | 21..467 | 47..476 | 188 | 21.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13549-PA | 474 | GI13549-PA | 3..452 | 13..462 | 1813 | 71.3 | Plus |
Dmoj\GI19773-PA | 1376 | GI19773-PA | 705..1096 | 56..438 | 245 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20914-PA | 480 | GL20914-PA | 1..471 | 1..471 | 1930 | 74.5 | Plus |
Dper\GL25842-PA | 470 | GL25842-PA | 28..463 | 28..462 | 1791 | 73.6 | Plus |
Dper\GL12606-PA | 144 | GL12606-PA | 1..117 | 314..430 | 558 | 87.2 | Plus |
Dper\GL10561-PA | 728 | GL10561-PA | 22..453 | 17..438 | 299 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21944-PA | 480 | GA21944-PA | 1..471 | 1..471 | 1923 | 74.5 | Plus |
Dpse\GA25467-PA | 470 | GA25467-PA | 6..462 | 6..461 | 1811 | 72.6 | Plus |
Dpse\GA14938-PA | 729 | GA14938-PA | 22..453 | 17..438 | 293 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14886-PA | 496 | GM14886-PA | 1..496 | 1..497 | 2589 | 97.6 | Plus |
Dsec\GM20559-PA | 691 | GM20559-PA | 32..423 | 56..438 | 261 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12294-PA | 477 | GD12294-PA | 1..477 | 1..497 | 2459 | 93.2 | Plus |
Dsim\GD26012-PA | 1026 | GD26012-PA | 22..453 | 17..438 | 281 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11908-PA | 502 | GJ11908-PA | 27..502 | 10..481 | 1759 | 67 | Plus |
Dvir\GJ17620-PA | 744 | GJ17620-PA | 9..453 | 10..438 | 271 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19695-PA | 514 | GK19695-PA | 6..509 | 2..497 | 1757 | 64.9 | Plus |
Dwil\GK21363-PA | 715 | GK21363-PA | 22..445 | 17..430 | 280 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22919-PA | 497 | GE22919-PA | 1..497 | 1..497 | 2569 | 95.6 | Plus |
Dyak\GE22515-PA | 497 | GE22515-PA | 1..497 | 1..497 | 2569 | 95.6 | Plus |
Dyak\GE21852-PA | 721 | GE21852-PA | 22..453 | 17..438 | 287 | 24.9 | Plus |
Translation from 37 to 1530
> RE03440.hyp MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nes-PC | 497 | CG9655-PC | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PB | 497 | CG9655-PB | 1..497 | 1..497 | 2656 | 100 | Plus |
nes-PA | 497 | CG9655-PA | 1..497 | 1..497 | 2656 | 100 | Plus |
oys-PE | 722 | CG18445-PE | 22..453 | 17..438 | 309 | 24.2 | Plus |
oys-PB | 722 | CG18445-PB | 22..453 | 17..438 | 309 | 24.2 | Plus |