Clone RE03440 Report

Search the DGRC for RE03440

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:34
Well:40
Vector:pFlc-1
Associated Gene/Transcriptnes-RA
Protein status:RE03440.pep: gold
Preliminary Size:2247
Sequenced Size:1680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9655 2001-12-14 Blastp of sequenced clone
CG9655 2002-01-01 Sim4 clustering to Release 2
CG9655 2003-01-01 Sim4 clustering to Release 3
nes 2008-04-29 Release 5.5 accounting
nes 2008-08-15 Release 5.9 accounting
nes 2008-12-18 5.12 accounting

Clone Sequence Records

RE03440.complete Sequence

1680 bp (1680 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070936

> RE03440.complete
ACTGCTCCAGTGTTAGTAACTTAACTTTAGATTTAGCATGGCGGAATTCG
AGGAGGACTTGCCCCACAATGGCCTGATGGACGGGATCGCCTCGGGAGTG
GGCGTTCCCGTGGAGGCACTCCGGCTGCTACTCACCATTCTGGCAGGTTA
TCCGGTGGCAGCATTATATCAAAAATTTATTTCTGTTATTGCCGATAAAA
CAGTGCATCACATGTTCTTTGCTGGATGCGGCGCTGGATTGTGTTACTTT
AACTATGGGCTCGACACATATCACTCACTGATAGCCATCCTAACCACCTA
TTTCCTGGTACTCCTCCTGCGAAAGAAGACGCAGATATTTCTGGCCATCA
ACTTCGTTTTCCATATGAGCTACCTGCTGCTGGGATATTTCTACACGTCC
AGCAATGATTACGATATTCTGTGGACGATGCCTCACTGCATTTTGGTTCT
ACGAATGATTGGCTATGGTTTTGACATCACCGACGGCCTGAAAGAGGAGT
CGGAATTGTCTAAGGACCAAAAGGAAACTGCGCTGAAGAAACCGCCCTCT
CTGCTGGAGCTCCTGGCCTTTTCCTACTTCCCCAGTGGATTTTTGGTTGG
ACCGCAGTTCCCATTCCGCCGTTACAAGGCCTTTGTCGATGGCGAATTCC
GTCAGCACGAAGGAAATGTGGAAGCTGGCGTTCGTCGCTTTGGAGCTGGT
GCGTTCTATCTGATTGTGTGTCAAGTGGGATTGAGATATCTGCCCGATTC
GTACTTCCTCACTCCGGAGTTTGCGCAAGTTTCATTCGTCAAGAGGATTT
ATTTACTCGGCTTCTGGGCCAAATTCAGTCTGTACAAGTACATATCCTGC
TGGCTGCTCACCGAGGGCGCCCTTATTTGCATTGGTCTGACCTACAAGGG
CGAGGACAAGAACGGACAGCCCGATTGGTCGGGCTGCAGCAATGTGAAGC
TAAAGCTGCTGGAGACTGGGAACACCATGGAGCACTACGTTCAAAGCTTC
AATGTAAACACGAACCAATGGGTTGGACAGTATATCTACAAGCGACTTAA
GTTCCTCAACAACCGCACAATCAGCTATGGCGCGGCTTTGGGTTTCTTGG
CGGTCTGGCACGGATACCACAGCGGTTACTACATGACATTCCTCATGGAA
TACATGGTTGTGAGCACCGAAAAACAAATAACCCGCTTCTACACCAAAGT
GGTGTTACCCCAGTGGGGCCACATTCTGAACAACTCGGACATCTACAAGC
TGCTTTATTTCATCACCCTCAAGTCGTACAACGTTGTGTACATGGGCTGG
TGCCTGACCGCATTTGTGTTTCTGAAATACGAGCGCTGGATCGTGGTGTA
CGGAGCGGTCAGCTACTATGGATTCACTTTCCTAGTACTCTGGGCTGCCT
TCTATCATACCTTCAATCACTTTTTCCGGAGCAGTTCCCGGAAACTAGCT
GGAGAGGATCAGAAGTTGCAGGACAGCAACACGGACAAACTCGTAGAGGA
AAAGAAACCAGAAGATAAGAAGTCTGAGTAGGATTGAAGCAATAGGAGGA
AGTGACTGGCAGTTATCAAAATTTTTGGTTTGCCTTGAGAATTGTTTGGA
ATTGGTTTTTTACACATAATCGAATTGTTCTTACTAACCAAATAAGATTA
CCAAATAAGAAGCCAAAAAAAAAAAAAAAA

RE03440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
nes.e 2838 nes.e 633..2270 28..1665 8175 99.9 Plus
nes.a 2244 nes.a 143..1778 30..1665 8165 99.9 Plus
nes.b 2271 nes.b 170..1805 30..1665 8165 99.9 Plus
nes.e 2838 nes.e 191..220 1..30 150 100 Plus
nes.a 2244 nes.a 5..34 1..30 150 100 Plus
nes.b 2271 nes.b 5..34 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19248001..19249034 1177..144 5140 99.8 Minus
chr3L 24539361 chr3L 19247341..19247827 1664..1178 2435 100 Minus
chr3L 24539361 chr3L 19249576..19249696 148..28 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:26:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258538..19259571 1177..144 5155 99.9 Minus
3L 28110227 3L 19257877..19258364 1665..1178 2440 100 Minus
3L 28110227 3L 19260113..19260233 148..28 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19251638..19252671 1177..144 5155 99.9 Minus
3L 28103327 3L 19250977..19251464 1665..1178 2440 100 Minus
3L 28103327 3L 19253213..19253333 148..28 605 100 Minus
3L 28103327 3L 19253746..19253775 30..1 150 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:53:45 has no hits.

RE03440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:54:47 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19247341..19247827 1178..1664 100 <- Minus
chr3L 19248001..19249031 147..1177 99 <- Minus
chr3L 19249578..19249693 31..146 100 <- Minus
chr3L 19250109..19250138 1..30 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:47:35 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 1..1494 38..1531 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:48 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 1..1494 38..1531 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:20:29 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 1..1494 38..1531 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:26 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 1..1494 38..1531 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:24:59 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 1..1494 38..1531 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:05 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RB 5..1668 1..1664 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:48 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RB 5..1668 1..1664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:29 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RB 5..1668 1..1664 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:26 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RB 5..1668 1..1664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:24:59 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RB 5..1668 1..1664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:47 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19257878..19258364 1178..1664 100 <- Minus
3L 19258538..19259568 147..1177 99 <- Minus
3L 19260115..19260230 31..146 100 <- Minus
3L 19260646..19260675 1..30 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:47 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19257878..19258364 1178..1664 100 <- Minus
3L 19258538..19259568 147..1177 99 <- Minus
3L 19260115..19260230 31..146 100 <- Minus
3L 19260646..19260675 1..30 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:47 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19257878..19258364 1178..1664 100 <- Minus
3L 19258538..19259568 147..1177 99 <- Minus
3L 19260115..19260230 31..146 100 <- Minus
3L 19260646..19260675 1..30 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:29 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19250978..19251464 1178..1664 100 <- Minus
arm_3L 19251638..19252668 147..1177 99 <- Minus
arm_3L 19253215..19253330 31..146 100 <- Minus
arm_3L 19253746..19253775 1..30 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:20 Download gff for RE03440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19250978..19251464 1178..1664 100 <- Minus
3L 19251638..19252668 147..1177 99 <- Minus
3L 19253215..19253330 31..146 100 <- Minus
3L 19253746..19253775 1..30 100   Minus

RE03440.pep Sequence

Translation from 37 to 1530

> RE03440.pep
MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV
IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI
FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG
LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV
DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF
VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC
SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA
LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS
DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV
LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*

RE03440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10775-PA 499 GF10775-PA 1..485 1..485 2150 80.2 Plus
Dana\GF12916-PA 745 GF12916-PA 22..452 17..438 305 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13418-PA 497 GG13418-PA 1..497 1..497 2544 94.4 Plus
Dere\GG25239-PA 1171 GG25239-PA 475..904 19..438 259 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14422-PA 468 GH14422-PA 7..468 17..479 1724 68.5 Plus
Dgri\GH21285-PA 747 GH21285-PA 22..453 17..438 274 23.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
nes-PC 497 CG9655-PC 1..497 1..497 2656 100 Plus
nes-PB 497 CG9655-PB 1..497 1..497 2656 100 Plus
nes-PA 497 CG9655-PA 1..497 1..497 2656 100 Plus
oys-PE 722 CG18445-PE 22..453 17..438 309 24.2 Plus
oys-PB 722 CG18445-PB 22..453 17..438 309 24.2 Plus
oys-PA 722 CG18445-PA 22..453 17..438 309 24.2 Plus
oys-PD 702 CG18445-PD 11..433 26..438 292 23.8 Plus
frj-PA 489 CG9526-PA 21..467 47..476 188 21.2 Plus
frj-PB 489 CG9526-PB 21..467 47..476 188 21.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13549-PA 474 GI13549-PA 3..452 13..462 1813 71.3 Plus
Dmoj\GI19773-PA 1376 GI19773-PA 705..1096 56..438 245 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20914-PA 480 GL20914-PA 1..471 1..471 1930 74.5 Plus
Dper\GL25842-PA 470 GL25842-PA 28..463 28..462 1791 73.6 Plus
Dper\GL12606-PA 144 GL12606-PA 1..117 314..430 558 87.2 Plus
Dper\GL10561-PA 728 GL10561-PA 22..453 17..438 299 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21944-PA 480 GA21944-PA 1..471 1..471 1923 74.5 Plus
Dpse\GA25467-PA 470 GA25467-PA 6..462 6..461 1811 72.6 Plus
Dpse\GA14938-PA 729 GA14938-PA 22..453 17..438 293 24.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14886-PA 496 GM14886-PA 1..496 1..497 2589 97.6 Plus
Dsec\GM20559-PA 691 GM20559-PA 32..423 56..438 261 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12294-PA 477 GD12294-PA 1..477 1..497 2459 93.2 Plus
Dsim\GD26012-PA 1026 GD26012-PA 22..453 17..438 281 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11908-PA 502 GJ11908-PA 27..502 10..481 1759 67 Plus
Dvir\GJ17620-PA 744 GJ17620-PA 9..453 10..438 271 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19695-PA 514 GK19695-PA 6..509 2..497 1757 64.9 Plus
Dwil\GK21363-PA 715 GK21363-PA 22..445 17..430 280 23.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22919-PA 497 GE22919-PA 1..497 1..497 2569 95.6 Plus
Dyak\GE22515-PA 497 GE22515-PA 1..497 1..497 2569 95.6 Plus
Dyak\GE21852-PA 721 GE21852-PA 22..453 17..438 287 24.9 Plus

RE03440.hyp Sequence

Translation from 37 to 1530

> RE03440.hyp
MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV
IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI
FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG
LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV
DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF
VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC
SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA
LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS
DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV
LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSE*

RE03440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
nes-PC 497 CG9655-PC 1..497 1..497 2656 100 Plus
nes-PB 497 CG9655-PB 1..497 1..497 2656 100 Plus
nes-PA 497 CG9655-PA 1..497 1..497 2656 100 Plus
oys-PE 722 CG18445-PE 22..453 17..438 309 24.2 Plus
oys-PB 722 CG18445-PB 22..453 17..438 309 24.2 Plus