Clone RE03648 Report

Search the DGRC for RE03648

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:36
Well:48
Vector:pFlc-1
Associated Gene/Transcriptwisp-RA
Protein status:RE03648.pep: gold
Sequenced Size:5334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
wisp 2012-04-18 Manual selection by Ken Wan

Clone Sequence Records

RE03648.complete Sequence

5334 bp assembled on 2013-01-26

GenBank Submission: BT149893.1

> RE03648.complete
GGGTACGATGCAAGACCCGATTGGTACAGTAGTTGCTAGCTGATTTCAGA
GCGTTTCAGGCGCAGTTTTAGTTTTTTATGAATGTTAGAATTGATGTGGA
AAGTGTGTGTTGGATATTAATGAGAACGGAGCAGTGCGACGATCGCTCAA
CAAGATAAGCACCGTTTGTTTTTGGGCCCGTTTCCGGCTTCCGGTTGCTA
GTTCCGGAAAAATTGCAACGCCTACTTTACGCGTACTTTTGGCATGTTGC
CGGCCTTTATTGCCTTTTTTATTTTGCCCACTTTGCGTTGCGATTTCGCT
TCTCCTCGCATGTAACGGTTCTTGCAAGCCCCCTATCACACACTTCGAAA
CGTGAAGAAGAGCAAAGAGAGGAGAGGCAAGGTGACCGCAATTTACGAAT
GCTAGAAGAGTGTGTGTGTGAAAATACGGTACTTTACACTGGTGGCTGTT
AAAAGTGAAAGTCAGAGTCAAAATTAAAAAATCCTGAAATGAAATAAAGT
GTATCTGACTAAAAGCACCAAAAAGAAAAGAAAAAGTAAAAAATATAAAA
ATACACAAAATTTATAATACATATATATCAAAACAAAAAACAAAAAAACA
ATAAAAAATCTAAAAAAGTTTTCGAATTCGAAAGGAAACTAAAAAAATAA
AACATAATTTTACATTAACTTAAAACTAGTTCTAAGCAACTGAGCGCACG
GGGCGAGCACTCGAGCCACATACCCTAGAAAACCCGATACCTGGGATATG
TTCAGCACCCGAATATCCGGCGATATGAAGATCTTTGCCGCAGATGTTGC
CGAGAGCAGCGTCACAGCAACATGCAACACGTCCGTACAGCAGCAGCAGT
CGCAGCAACTTGAGTTCCGGACACGAATGTCCGCCGGATCGCCGAGCTCC
AAGTCGGGACAGTGTCATCTGAAGTTCGGGAAGTACAACAATAAAACGGC
CAATCTGCTGCGCCAGGTGAATAGTTGCCACAGCAGTAACAGCAGCAGCA
ACACAAGCAACAACAACAACGAGGCCATCAAGGGACAACAACAGCAGCCA
CTGCACTACTGCAACAGCAACAACAGTCACTCGTGGGCCCGAAAGAAATA
CTTTGGCAATGGCAACAGCAACAACAGTCTGCTGCAGCAGCAACAGCAAC
CATCTTCGTTCTTCCAGCGGCAGCAGCAGCAACACCAAATGCAGATGCAA
CAGGAGAAGCAGGCGACGAACAACAACGATGCGCTGATGAAGAATCAGAA
TGTTGTCAACGCACACGTGTCTGATTGCAAGTCTAGCGATAGCAACAACA
ACAGCACCAGCAGCAGCAACAACAACAGCACCATCAGCAGCAACAACAAC
AACACTAGCAGCGCCAGCAACAACAACACTGGCAGCAGCAGCAGTTGCAG
CAACAGAACAAAGCCAGCCAAATGGCTCAATGAGAACAGTAGCAGCAGTA
GCAGCAGCAACAATAATAATATCAGCTGCAGAAATAACAACACCAGTAGC
ATTGATACCAAGCGACGCAACTCATCAGCGGGCGCAACTGCCGCTTACTA
TCGCAAGTCGGAATCGGAATCCGGAAGCTCGGAAGGTGCAGCAGAATCGA
CGGAAACGGAGGCAACTCGAACAGGTGGCTGCAACAGCAACAGGACTGCA
GAATCGTCGAGTGCAGATGGTGGCACTCAAGCAACCATGGGTAAGAGCCA
GGATCAGGAGCAGGATCAGACGGTCAAGCAGAGGCCGCGACAGCAACCTC
TGAGTTTCTGGAAAACTAATTACCCACAGACAAGCGCCACTCAGCTTAAA
GATAAGGAAACGGTAGCAGCAGTTGTGTCGGCGGCCGCTGTAGCAGCTGC
AGCAGCAGCCGCATCAGCATCGGAGCAACAGCAGCAACAGCAGTCACTGT
CCATCGAGCATAGGCGCAACTCGGGCTACCAGCAGCATCAGCAGCACAAC
TACTATCCGTATTACTATTCGCAGCCCAAGCAGTTGACAATCGCCTCGTT
CCTGCAGAAGGAAATGCTTCCGGATAGCACTGAGAAGTCCAGCAGCAATA
CGGGCGGCAGCAACATGATTAGAAGCAGCAGCAACGGCAACAGCAACTTC
TCACGGCATCAATATGGCCATCAGTCGACGGGATCTGGCTACCAGCAGCA
GCAGCAGCGGTACCGCAATGCCCAGAATGTCTATCAGCAGTACCAGCATC
AGCAGCAACATCATGCGCAGCAGCATACGCATCCGCACTTCCGGCGAAAG
CACAGTGACAACGGCAGCGGCATCAACAAGAAGATGCACTACAGTCCACC
GGGAAAGAGTGGGGATCCAGCGGACAGATCCGCATCTGGACAGCAACAGC
ACCACCATCCACATCAGCAACAGAAGACCATCGAGATCTTGGCCAGTAGC
CACTTCAACGCCATGCACCGCCGGATGCAGGGTGGGAATAATAAGAACGG
ATACTATCAGCACAGCTATAACCCGATGACGGGCGAAGTTGGTTCCACGC
CTACGCGCTCCGAGCACCAAAATATCTATAATCTTACTTATATTCACGTG
GACACGGAGGCAACCGGCGAGGCCGCATCAGCAGCGGGATCAACACCGGT
GGTCAAGCCATCGCTGCTCAGCAAGCCGAACATTTCGATAACGCCAGCTT
CGAGCACAACACCGACAACTGTGGACAGAGCACTGCTACCGGCGGTTCGC
TCCGTGTCTGCTCCGGCGTCCGGTTCTGCTCTGCCGGCGCCAGCGAACCA
CGTACGAAACATGTTTCCACCGCCACCGCTGGCTATGCTTGGTGGCCACG
GATTGCTGTCGCCGGTGACCACGACAACGCCCACTAAAATGATTAGCTGC
GCCCAGCTGGATGAGGCCATAACTGCCGCGGCCGCCAGTGGTGACAAGTT
GTCCACGAGTCCCAGTTATAATCAGGCGGGGCACTACATTATGCCGCCCC
AGCAGCAGCAGCAGCAGCAACTATCGTCGCACCCAATCCCGACTGGAACA
AGTTCACATCCACCACCGCCGCCCCCGCCACATATGTTCTTCCACTTTGC
CGACGGGTTCTGCAATCCGGGTCAGGGTCACCAGGCGCCACCAGCTACCA
TGTGGCCACACTCTAGCTCTCCCTGCTATCCGGCTTCGTACGGATCCAGC
TGCGGAAGCGGAACTGGAGCCGGAACATCACCGCACAACAATGATGGGAA
TGCCGGTGCACTGCGACCAGCATCGCCAGCACTTTCCTCATCCTCACTTG
GCAGTGAGTCCCAGTGGAGCGGTACAAGCAATCGCAGTCGCTTGGGCCAC
AATGGACATCCCTCCATTTCGCCAACTCCCAGCGCACTGGGATCTGCCCA
GCTATCACCGCATTTGGCCGAGATGCGTGTGCAGCATCCACTGCACCAGC
AACATCCTCCATCGCATGCCAGTCATCGTCCGCATGGGCAGATGGGCGGA
CATGCAATGAGCTCCTATGTGCCGCACCGCCCACCACCACCCCCACATCC
GTCCATCTCGTCGCCGAACCCGACGCCAGTTGCTACTGGAGCCGGAGGGC
CTTGGTACGAGATGATCCTGCCGCCGGATCGCTACTTGGCCCAAGCGCGA
AACATTGAGGTCACCGTGCAGCCAGAGAAGCTTATCTGCATGTGCAAGTA
CGACAATCTGTCGGCGGAAATCTGGAAGAGATTCCGAGGAGCCCAGCAAA
CGCACAATAAGTTTAAGCTTAAAATGCGTCTCTGGCGCTACTTGTACCTA
TGGATGCATCAACCGATGTTTGAGAGGTATCGCATCTGCCTAGTTGGATC
CACCATCACGGGCTTCGGAACGGACTCCTCCGACATCGATATGTGTCTGC
TGCCCGAGCAGGGGGTACATCCCCACCAGCATCAGTACCACCAACACCAT
CACTTCCATAACGAGAAGCGAACGGAGGCTTTGATCATTCTTACTTTATT
CAACGCGGTGTTGAAGGACACGGAGGTTTTCCAGGACTTCAATCTGATCG
AGGCGAGAGTGCCGATCCTGCGCTTCAAGGACATCAGCAATGGCATCGAG
GTTGATCTTAACTTTAACAACTGTGTGGGCATTAAAAACACCTATCTGCT
ACAACTTTACGCCCAAATGGATTGGCGAACACGACCATTGGTGGTGATCG
TGAAGCTCTGGGCGCAGTATCACGACATCAACGATGCCAAGCGCATGACC
ATTTCCAGCTACTCGCTGGTGCTAATGGTTCTGCACTACCTTCAGCATGC
CTGCGTGCCCCACGTTCTGCCCTGCCTGCACTCCCTGTACCCGGAGAAGT
TTCAGCTGGGGCAGCAGGATTGCCTGGATCTGGATCTCATCGAACCCATC
GAGCCCTACCAGGCGCTAAACACCCAGACGCTCGGCGAGCACCTTCTGGG
TTTCTTCAAGTACTACAGCACCTTTGACTTCCGGAACTTTGCCATCTCGA
TTCGAACTGGTGGTGTCCTGCCGGTTTCCACATGTCGAATGGCGAAGAGC
CCCAAGAACGATGTCTACCAGTGGAAGGAGCTAAACATTGAGGAGCCCTT
CGATCTCTCCAATACGGCCCGATCCGTCTACGATGGGCCAACATTTGAGC
GTGTGAAGGCCGTTTTTCTGATCTCGGCACGTCGCCTCGATCACACCCTC
GACCTGGCCACCATCTTCCGCCCCATTCACCACGTGCCCGAGCACTTTCC
CCAGCTGCAGCAGCACCAGCAGCAGTTCGAGCAGCAGCTTCACCATCCCA
TATCCGGTCAGCAGCGAAGTGCTGGAGGAGGAGGAGATGGTGCTAATCCA
GTGCCCAGCACGTTGAACCCAGATGCAGCGTCGACCTTTGCCGAAACGAC
TGCAGCGCATGTCGCCTAATTGTAGCCCTTTAAATGGCAAACATAAAAAG
AAAGTACAACAACTTTATGGTACTTGGAAACAAGAATGAAGAAACTAAAT
GGATAGGTAATATGTGCAGCAATGTTAAATCGAAACAGGAAAGCTTGTAA
ATTGAAATTCAAAAGAATCCGAACCGAATCATCCGTACGGAAAAGAACGT
GAAAGCAGCCCGACTGGAATCGAATTTCAATACACTTTTACATTACATAC
ATTATCTTGTTAAATGTTATTATATTCTCCTATTTATACCTTTAAACACT
CGAATTGTTTGCTCGCATTCCATTAATTATTGTAAACAGCCACGGAGGTG
TGCGATGTTCGTTCCTCCAGTGGTGTGTATGTATCTATTTGAAAAACAAC
ATGTCATCCGAAAATGTAAAATTGCAAGTTCTGTAAATTAAAAAGCAACA
AAACAGCCAAGTGTCTGGAAAAAAAAAAAAAAAA

RE03648.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11785393..11786953 246..1803 7650 99.5 Plus
chrX 22417052 chrX 11787011..11788497 1804..3290 7390 99.8 Plus
chrX 22417052 chrX 11790172..11791064 4428..5318 4340 99.3 Plus
chrX 22417052 chrX 11788567..11789042 3290..3759 2225 98.3 Plus
chrX 22417052 chrX 11789798..11790107 4118..4427 1550 100 Plus
chrX 22417052 chrX 11785079..11785321 4..246 1215 100 Plus
chrX 22417052 chrX 11789096..11789309 3760..3973 1070 100 Plus
chrX 22417052 chrX 11789365..11789509 3973..4117 725 100 Plus
chr3R 27901430 chr3R 18039507..18039591 4145..4229 230 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11894262..11895819 246..1803 7790 100 Plus
X 23542271 X 11895877..11897363 1804..3290 7435 100 Plus
X 23542271 X 11899030..11899923 4428..5321 4470 100 Plus
X 23542271 X 11897431..11897900 3290..3759 2350 100 Plus
X 23542271 X 11898656..11898965 4118..4427 1550 100 Plus
X 23542271 X 11893948..11894190 4..246 1215 100 Plus
X 23542271 X 11897954..11898167 3760..3973 1070 100 Plus
X 23542271 X 11898223..11898367 3973..4117 725 100 Plus
3R 32079331 3R 22215689..22215936 3982..4229 235 73 Plus
Blast to na_te.dros performed 2019-03-15 14:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2938 1286..1943 583 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2219..2877 884..1547 566 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..3054 817..1568 526 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2988 1285..1953 505 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2975 1036..1656 469 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2458..3155 805..1501 426 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2952 1111..1747 425 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2895 1333..1959 422 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6412..6940 1007..1546 420 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..6928 1291..1496 409 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2689 1165..1533 408 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..7252 981..1519 406 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6524..7012 979..1466 396 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2971 1061..1715 375 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2889 977..1494 363 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6410..6899 1065..1541 352 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6706..7192 1023..1511 350 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2372..3000 1807..2424 344 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..7200 981..1366 319 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2271..2856 1364..1945 302 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7006 1109..1411 291 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2989 1435..2095 280 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6937 2071..2294 280 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..7088 1107..1455 280 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2881 1861..2429 277 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2708 2024..2404 272 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7011 2040..2293 272 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2664 2040..2409 267 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..7171 1928..2380 260 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2996 1807..2456 257 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2800 1916..2413 251 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6628..6952 1348..1666 249 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..7100 2026..2412 232 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..6940 2180..2426 227 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..3001 1612..2296 220 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..7085 1815..2158 219 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2990 1580..2211 208 54.2 Plus
roo 9092 roo DM_ROO 9092bp 1051..1178 1361..1492 208 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6851 1435..1544 191 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2810..2981 977..1152 184 59.9 Plus
roo 9092 roo DM_ROO 9092bp 1073..1158 981..1075 175 70.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1177 1384..1512 173 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6941 1449..1685 171 57.9 Plus
roo 9092 roo DM_ROO 9092bp 1023..1148 1403..1538 171 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7114 2040..2358 169 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1376..1587 1290..1500 164 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2455 2263..2413 160 58.8 Plus
roo 9092 roo DM_ROO 9092bp 1063..1190 1106..1240 155 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6888 2253..2413 152 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2533 2040..2177 149 60.7 Plus
BS 5142 BS BS 5142bp 2035..2140 1112..1219 147 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7093 1862..2240 146 55.4 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6286..6509 449..670 141 56.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3501 1131..1384 137 53.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2645 2326..2624 136 55.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 127..196 1106..1179 134 70.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9157..9226 1106..1179 134 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1633 2040..2151 132 60.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 976..1006 1435..1465 128 90.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2454 2341..2466 127 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2425 2341..2413 124 64.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3224..3321 1382..1476 123 63 Plus
roo 9092 roo DM_ROO 9092bp 1103..1166 2040..2103 122 65.6 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 531..575 1036..1082 122 76.6 Plus

RE03648.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:07:26 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11789798..11790107 4118..4427 100 -> Plus
chrX 11785076..11785321 1..246 99 -> Plus
chrX 11785394..11786953 247..1803 99 -> Plus
chrX 11787011..11788497 1804..3290 99 -> Plus
chrX 11788568..11789042 3291..3759 98 -> Plus
chrX 11789096..11789309 3760..3973 100 -> Plus
chrX 11789366..11789509 3974..4117 100 -> Plus
chrX 11790172..11791064 4428..5318 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-01-26 11:31:10 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RA 1..4122 748..4869 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:18:49 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RA 1..4122 748..4869 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:50:41 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RA 1..4122 748..4869 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-26 11:31:09 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RA 1..539 2..535 99 == Plus
wisp-RA 540..5119 729..5308 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:18:49 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RC 3..5320 1..5318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:50:41 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
wisp-RC 3..5320 1..5318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:26 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
X 11893945..11894190 1..246 99 -> Plus
X 11894263..11895819 247..1803 100 -> Plus
X 11895877..11897363 1804..3290 100 -> Plus
X 11897432..11897900 3291..3759 100 -> Plus
X 11897954..11898167 3760..3973 100 -> Plus
X 11898224..11898367 3974..4117 100 -> Plus
X 11898656..11898965 4118..4427 100 -> Plus
X 11899030..11899920 4428..5318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:26 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
X 11893945..11894190 1..246 99 -> Plus
X 11894263..11895819 247..1803 100 -> Plus
X 11895877..11897363 1804..3290 100 -> Plus
X 11897432..11897900 3291..3759 100 -> Plus
X 11897954..11898167 3760..3973 100 -> Plus
X 11898224..11898367 3974..4117 100 -> Plus
X 11898656..11898965 4118..4427 100 -> Plus
X 11899030..11899920 4428..5318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:26 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
X 11893945..11894190 1..246 99 -> Plus
X 11894263..11895819 247..1803 100 -> Plus
X 11895877..11897363 1804..3290 100 -> Plus
X 11897432..11897900 3291..3759 100 -> Plus
X 11897954..11898167 3760..3973 100 -> Plus
X 11898224..11898367 3974..4117 100 -> Plus
X 11898656..11898965 4118..4427 100 -> Plus
X 11899030..11899920 4428..5318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:18:49 Download gff for RE03648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11787978..11788223 1..246 99 -> Plus
arm_X 11788296..11789852 247..1803 100 -> Plus
arm_X 11789910..11791396 1804..3290 100 -> Plus
arm_X 11791465..11791933 3291..3759 100 -> Plus
arm_X 11791987..11792200 3760..3973 100 -> Plus
arm_X 11792257..11792400 3974..4117 100 -> Plus
arm_X 11792689..11792998 4118..4427 100 -> Plus
arm_X 11793063..11793953 4428..5318 100   Plus

RE03648.pep Sequence

Translation from 747 to 4868

> RE03648.pep
MFSTRISGDMKIFAADVAESSVTATCNTSVQQQQSQQLEFRTRMSAGSPS
SKSGQCHLKFGKYNNKTANLLRQVNSCHSSNSSSNTSNNNNEAIKGQQQQ
PLHYCNSNNSHSWARKKYFGNGNSNNSLLQQQQQPSSFFQRQQQQHQMQM
QQEKQATNNNDALMKNQNVVNAHVSDCKSSDSNNNSTSSSNNNSTISSNN
NNTSSASNNNTGSSSSCSNRTKPAKWLNENSSSSSSSNNNNISCRNNNTS
SIDTKRRNSSAGATAAYYRKSESESGSSEGAAESTETEATRTGGCNSNRT
AESSSADGGTQATMGKSQDQEQDQTVKQRPRQQPLSFWKTNYPQTSATQL
KDKETVAAVVSAAAVAAAAAAASASEQQQQQQSLSIEHRRNSGYQQHQQH
NYYPYYYSQPKQLTIASFLQKEMLPDSTEKSSSNTGGSNMIRSSSNGNSN
FSRHQYGHQSTGSGYQQQQQRYRNAQNVYQQYQHQQQHHAQQHTHPHFRR
KHSDNGSGINKKMHYSPPGKSGDPADRSASGQQQHHHPHQQQKTIEILAS
SHFNAMHRRMQGGNNKNGYYQHSYNPMTGEVGSTPTRSEHQNIYNLTYIH
VDTEATGEAASAAGSTPVVKPSLLSKPNISITPASSTTPTTVDRALLPAV
RSVSAPASGSALPAPANHVRNMFPPPPLAMLGGHGLLSPVTTTTPTKMIS
CAQLDEAITAAAASGDKLSTSPSYNQAGHYIMPPQQQQQQQLSSHPIPTG
TSSHPPPPPPPHMFFHFADGFCNPGQGHQAPPATMWPHSSSPCYPASYGS
SCGSGTGAGTSPHNNDGNAGALRPASPALSSSSLGSESQWSGTSNRSRLG
HNGHPSISPTPSALGSAQLSPHLAEMRVQHPLHQQHPPSHASHRPHGQMG
GHAMSSYVPHRPPPPPHPSISSPNPTPVATGAGGPWYEMILPPDRYLAQA
RNIEVTVQPEKLICMCKYDNLSAEIWKRFRGAQQTHNKFKLKMRLWRYLY
LWMHQPMFERYRICLVGSTITGFGTDSSDIDMCLLPEQGVHPHQHQYHQH
HHFHNEKRTEALIILTLFNAVLKDTEVFQDFNLIEARVPILRFKDISNGI
EVDLNFNNCVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDINDAKRM
TISSYSLVLMVLHYLQHACVPHVLPCLHSLYPEKFQLGQQDCLDLDLIEP
IEPYQALNTQTLGEHLLGFFKYYSTFDFRNFAISIRTGGVLPVSTCRMAK
SPKNDVYQWKELNIEEPFDLSNTARSVYDGPTFERVKAVFLISARRLDHT
LDLATIFRPIHHVPEHFPQLQQHQQQFEQQLHHPISGQQRSAGGGGDGAN
PVPSTLNPDAASTFAETTAAHVA*

RE03648.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21578-PA 1334 GF21578-PA 1..1292 10..1316 2825 53.2 Plus
Dana\GF18072-PA 709 GF18072-PA 249..601 942..1307 992 52 Plus
Dana\GF21267-PA 611 GF21267-PA 220..459 1017..1241 215 28.9 Plus
Dana\GF10110-PA 665 GF10110-PA 119..357 1003..1266 201 29.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18455-PA 1361 GG18455-PA 1..1361 1..1373 4772 81.3 Plus
Dere\GG11113-PA 1345 GG11113-PA 880..1297 936..1363 1048 47.6 Plus
Dere\GG12706-PA 613 GG12706-PA 218..454 1017..1238 238 29.6 Plus
Dere\GG10113-PA 567 GG10113-PA 270..482 1012..1234 167 29.1 Plus
Dere\GG15086-PA 659 GG15086-PA 112..321 1003..1234 167 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12744-PA 1336 GH12744-PA 284..1283 312..1312 1938 45.4 Plus
Dgri\GH21064-PA 578 GH21064-PA 137..497 936..1307 984 50.9 Plus
Dgri\GH11902-PA 610 GH11902-PA 222..463 1017..1241 216 28.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
wisp-PC 1373 CG15737-PC 1..1373 1..1373 7330 100 Plus
wisp-PA 1373 CG15737-PA 1..1373 1..1373 7330 100 Plus
wisp-PB 1372 CG15737-PB 1..1372 1..1373 7313 99.9 Plus
Gld2-PB 1364 CG5732-PB 907..1316 942..1363 984 48.7 Plus
Gld2-PC 1364 CG5732-PC 907..1316 942..1363 984 48.7 Plus
Mur89F-PC 2158 CG4090-PC 275..1202 19..919 289 20.9 Plus
Mur89F-PB 2159 CG4090-PB 275..1202 19..919 289 20.9 Plus
Mur89F-PC 2158 CG4090-PC 390..1197 18..870 255 19.6 Plus
Mur89F-PB 2159 CG4090-PB 390..1197 18..870 255 19.6 Plus
MTPAP-PC 612 CG11418-PC 218..454 1017..1238 225 29.2 Plus
MTPAP-PA 612 CG11418-PA 218..454 1017..1238 225 29.2 Plus
Muc68D-PB 1514 CG6004-PB 393..1289 19..933 220 19.5 Plus
dikar-PD 3222 CG42799-PD 322..886 31..597 214 21.5 Plus
dikar-PF 3261 CG42799-PF 322..886 31..597 214 21.5 Plus
CG15040-PA 1895 CG15040-PA 1457..1888 112..576 211 20 Plus
Smr-PG 3607 CG4013-PG 19..563 75..599 211 22.3 Plus
Mur89F-PC 2158 CG4090-PC 272..750 79..586 209 23.5 Plus
Mur89F-PB 2159 CG4090-PB 272..750 79..586 209 23.5 Plus
CG15040-PA 1895 CG15040-PA 1468..1881 108..523 208 19.3 Plus
CG15040-PA 1895 CG15040-PA 1485..1882 27..476 208 20 Plus
Smr-PF 3601 CG4013-PF 19..557 75..599 207 22.4 Plus
Smr-PE 3601 CG4013-PE 19..557 75..599 207 22.4 Plus
Smr-PD 3601 CG4013-PD 19..557 75..599 207 22.4 Plus
CG43347-PD 2652 CG43347-PD 2..565 140..753 206 20.1 Plus
CG43347-PB 2666 CG43347-PB 2..565 140..753 206 20.1 Plus
CG43347-PC 2684 CG43347-PC 2..565 140..753 206 20.1 Plus
Mur89F-PC 2158 CG4090-PC 258..969 160..867 204 18.6 Plus
Mur89F-PB 2159 CG4090-PB 258..969 160..867 204 18.6 Plus
CG15040-PA 1895 CG15040-PA 1591..1888 64..334 203 23.4 Plus
pb-PB 777 CG31481-PB 173..709 79..563 195 22.6 Plus
pros-PH 1674 CG17228-PH 44..468 130..540 193 23.4 Plus
pros-PM 1703 CG17228-PM 44..468 130..540 193 23.4 Plus
pros-PI 1835 CG17228-PI 44..468 130..540 193 23.4 Plus
Mur89F-PC 2158 CG4090-PC 253..685 121..533 192 21.6 Plus
Mur89F-PB 2159 CG4090-PB 253..685 121..533 192 21.6 Plus
Mur89F-PC 2158 CG4090-PC 936..1216 19..304 188 23.6 Plus
Mur89F-PB 2159 CG4090-PB 936..1216 19..304 188 23.6 Plus
mkg-p-PD 659 CG7163-PD 112..383 1003..1277 185 28.5 Plus
mkg-p-PB 659 CG7163-PB 112..383 1003..1277 185 28.5 Plus
mkg-p-PA 659 CG7163-PA 112..383 1003..1277 185 28.5 Plus
Mur89F-PC 2158 CG4090-PC 611..1400 14..759 184 19.6 Plus
Mur89F-PB 2159 CG4090-PB 611..1400 14..759 184 19.6 Plus
CG15040-PA 1895 CG15040-PA 1697..1895 63..269 184 23.8 Plus
CG43736-PL 1367 CG43736-PL 481..711 14..216 183 28.1 Plus
CG43736-PI 1367 CG43736-PI 481..711 14..216 183 28.1 Plus
Muc68D-PB 1514 CG6004-PB 557..1061 14..507 181 19.5 Plus
osa-PE 2555 CG7467-PE 97..474 454..925 180 25 Plus
osa-PC 2556 CG7467-PC 97..474 454..925 180 25 Plus
osa-PF 2559 CG7467-PF 97..474 454..925 180 25 Plus
osa-PA 2703 CG7467-PA 97..474 454..925 180 25 Plus
osa-PB 2716 CG7467-PB 97..474 454..925 180 25 Plus
osa-PD 2716 CG7467-PD 97..474 454..925 180 25 Plus
NFAT-PB 1457 CG11172-PB 25..381 189..543 178 24.2 Plus
pnt-PC 623 CG17077-PC 21..315 64..323 177 22.9 Plus
pnt-PE 625 CG17077-PE 21..317 64..323 176 23.7 Plus
mim-PG 2009 CG33558-PG 1474..1925 48..498 176 24.4 Plus
mim-PC 2027 CG33558-PC 1492..1943 48..498 176 24.4 Plus
mim-PF 2028 CG33558-PF 1492..1943 48..498 176 24.4 Plus
Tet-PA 2860 CG43444-PA 35..306 81..375 174 25.4 Plus
Tet-PE 2866 CG43444-PE 35..306 81..375 174 25.4 Plus
Tet-PB 2915 CG43444-PB 35..306 81..375 174 25.4 Plus
Tet-PF 2921 CG43444-PF 35..306 81..375 174 25.4 Plus
Muc68D-PB 1514 CG6004-PB 292..998 121..870 173 19.6 Plus
osa-PE 2555 CG7467-PE 165..767 311..935 173 23.2 Plus
osa-PC 2556 CG7467-PC 165..767 311..935 173 23.2 Plus
osa-PF 2559 CG7467-PF 165..767 311..935 173 23.2 Plus
osa-PA 2703 CG7467-PA 165..767 311..935 173 23.2 Plus
osa-PB 2716 CG7467-PB 165..767 311..935 173 23.2 Plus
osa-PD 2716 CG7467-PD 165..767 311..935 173 23.2 Plus
Pdp1-PC 570 CG17888-PC 47..310 31..262 173 26.8 Plus
Pdp1-PL 581 CG17888-PL 47..310 31..262 173 26.8 Plus
Clk-PH 895 CG7391-PH 614..851 73..341 171 24.7 Plus
Clk-PG 895 CG7391-PG 614..851 73..341 171 24.7 Plus
Clk-PF 961 CG7391-PF 680..917 73..341 171 24.7 Plus
Clk-PA 1023 CG7391-PA 742..979 73..341 171 24.7 Plus
Muc68D-PB 1514 CG6004-PB 292..1167 19..925 167 17.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15889-PA 550 GI15889-PA 104..464 937..1311 1636 80.3 Plus
Dmoj\GI10468-PA 455 GI10468-PA 6..366 936..1307 996 51.6 Plus
Dmoj\GI15633-PA 613 GI15633-PA 222..461 1017..1241 222 29.1 Plus
Dmoj\GI23075-PA 564 GI23075-PA 274..485 1012..1232 186 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20158-PA 1338 GL20158-PA 31..1213 36..1310 2132 46.4 Plus
Dper\GL23210-PA 1280 GL23210-PA 841..1218 942..1320 1028 49.2 Plus
Dper\GL14387-PA 628 GL14387-PA 224..460 1017..1238 232 30.1 Plus
Dper\GL12677-PA 541 GL12677-PA 239..456 1006..1234 173 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26658-PA 510 GA26658-PA 1..379 953..1310 1446 71.5 Plus
Dpse\GA27190-PB 1277 GA27190-PB 838..1213 942..1318 1029 49.6 Plus
Dpse\GA26649-PA 522 GA26649-PA 31..517 36..597 426 39.7 Plus
Dpse\GA10992-PA 660 GA10992-PA 226..462 1017..1238 232 30.1 Plus
Dpse\GA10633-PC 444 GA10633-PC 142..358 1006..1233 178 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13244-PA 753 GM13244-PA 1..733 1..742 2434 89.3 Plus
Dsec\GM13245-PA 430 GM13245-PA 1..430 939..1373 2315 95.6 Plus
Dsec\GM26408-PA 1338 GM26408-PA 874..1234 936..1307 1043 51.7 Plus
Dsec\mkg-p-PA 659 GM24942-PA 112..383 1003..1277 188 28.2 Plus
Dsec\GM10512-PA 563 GM10512-PA 264..480 1012..1238 168 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20928-PA 1338 GD20928-PA 874..1234 936..1307 1042 51.7 Plus
Dsim\GD22232-PA 293 GD22232-PA 1..236 1..235 537 82.3 Plus
Dsim\GD22232-PA 293 GD22232-PA 232..286 928..982 277 85.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23150-PA 588 GJ23150-PA 137..497 936..1307 994 51.7 Plus
Dvir\GJ19221-PA 618 GJ19221-PA 230..469 1017..1241 218 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25423-PA 1383 GK25423-PA 374..1324 335..1310 2090 50.5 Plus
Dwil\GK14246-PA 1448 GK14246-PA 921..1281 936..1307 1018 52.3 Plus
Dwil\GK16234-PA 506 GK16234-PA 103..335 1017..1235 244 30.8 Plus
Dwil\GK18036-PA 582 GK18036-PA 69..270 1017..1241 187 27.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15676-PA 1334 GE15676-PA 1..1334 1..1373 3891 73.8 Plus
Dyak\GE10276-PA 1341 GE10276-PA 876..1293 936..1363 1037 47.1 Plus
Dyak\GE16534-PA 612 GE16534-PA 218..454 1017..1238 225 29.5 Plus

RE03648.hyp Sequence

Translation from 747 to 4868

> RE03648.hyp
MFSTRISGDMKIFAADVAESSVTATCNTSVQQQQSQQLEFRTRMSAGSPS
SKSGQCHLKFGKYNNKTANLLRQVNSCHSSNSSSNTSNNNNEAIKGQQQQ
PLHYCNSNNSHSWARKKYFGNGNSNNSLLQQQQQPSSFFQRQQQQHQMQM
QQEKQATNNNDALMKNQNVVNAHVSDCKSSDSNNNSTSSSNNNSTISSNN
NNTSSASNNNTGSSSSCSNRTKPAKWLNENSSSSSSSNNNNISCRNNNTS
SIDTKRRNSSAGATAAYYRKSESESGSSEGAAESTETEATRTGGCNSNRT
AESSSADGGTQATMGKSQDQEQDQTVKQRPRQQPLSFWKTNYPQTSATQL
KDKETVAAVVSAAAVAAAAAAASASEQQQQQQSLSIEHRRNSGYQQHQQH
NYYPYYYSQPKQLTIASFLQKEMLPDSTEKSSSNTGGSNMIRSSSNGNSN
FSRHQYGHQSTGSGYQQQQQRYRNAQNVYQQYQHQQQHHAQQHTHPHFRR
KHSDNGSGINKKMHYSPPGKSGDPADRSASGQQQHHHPHQQQKTIEILAS
SHFNAMHRRMQGGNNKNGYYQHSYNPMTGEVGSTPTRSEHQNIYNLTYIH
VDTEATGEAASAAGSTPVVKPSLLSKPNISITPASSTTPTTVDRALLPAV
RSVSAPASGSALPAPANHVRNMFPPPPLAMLGGHGLLSPVTTTTPTKMIS
CAQLDEAITAAAASGDKLSTSPSYNQAGHYIMPPQQQQQQQLSSHPIPTG
TSSHPPPPPPPHMFFHFADGFCNPGQGHQAPPATMWPHSSSPCYPASYGS
SCGSGTGAGTSPHNNDGNAGALRPASPALSSSSLGSESQWSGTSNRSRLG
HNGHPSISPTPSALGSAQLSPHLAEMRVQHPLHQQHPPSHASHRPHGQMG
GHAMSSYVPHRPPPPPHPSISSPNPTPVATGAGGPWYEMILPPDRYLAQA
RNIEVTVQPEKLICMCKYDNLSAEIWKRFRGAQQTHNKFKLKMRLWRYLY
LWMHQPMFERYRICLVGSTITGFGTDSSDIDMCLLPEQGVHPHQHQYHQH
HHFHNEKRTEALIILTLFNAVLKDTEVFQDFNLIEARVPILRFKDISNGI
EVDLNFNNCVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDINDAKRM
TISSYSLVLMVLHYLQHACVPHVLPCLHSLYPEKFQLGQQDCLDLDLIEP
IEPYQALNTQTLGEHLLGFFKYYSTFDFRNFAISIRTGGVLPVSTCRMAK
SPKNDVYQWKELNIEEPFDLSNTARSVYDGPTFERVKAVFLISARRLDHT
LDLATIFRPIHHVPEHFPQLQQHQQQFEQQLHHPISGQQRSAGGGGDGAN
PVPSTLNPDAASTFAETTAAHVA*

RE03648.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
wisp-PC 1373 CG15737-PC 1..1373 1..1373 7330 100 Plus
wisp-PA 1373 CG15737-PA 1..1373 1..1373 7330 100 Plus
wisp-PB 1372 CG15737-PB 1..1372 1..1373 7313 99.9 Plus
Gld2-PB 1364 CG5732-PB 907..1316 942..1363 984 48.7 Plus
Gld2-PC 1364 CG5732-PC 907..1316 942..1363 984 48.7 Plus