Clone RE03769 Report

Search the DGRC for RE03769

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:37
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG7271-RA
Protein status:RE03769.pep: gold
Sequenced Size:1416

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7271 2008-04-29 Release 5.5 accounting
CG7271 2008-04-29 Picked prior to 5.5
CG7271 2008-08-15 Release 5.9 accounting
CG7271 2008-12-18 5.12 accounting

Clone Sequence Records

RE03769.complete Sequence

1416 bp assembled on 2007-08-16

GenBank Submission: BT031007

> RE03769.complete
AGTCAGCAACTGAACCTTGTCATAGACACATCTCAGTGCTTCAGAGCTAT
ATCCACCTTCAGTTTTCGAATCCAAAGTTTCCATATCTCAATCATGTTCG
ACGAGCCCATATCCAGCTTCGTTTTTACCGACGAAGAGACCACGCAGACA
TTCCACCACCAGTGGTTTTCCCAGGGCCAGTTACACGAATGTGCCACCTG
CTACAGCTCCATCGACGCAGATGAGCCGCCCTCCCAGCATTGGCTGCGGG
GAGGAGAAGCATCACAGGGCTTGCATCTTACCAAGCAACAGCAGGCCGTT
ATGGATATTATCGAGGCCCGCCAGATCGAGACTTTCTTTTTCTGCGACGA
GAGTTCCAAGGACAAGCTGGAACACTTCATGGGCGAGACCTGTGCGAGGG
GAATCCCCGAGCTTCTCCGCTGGATGTTCCAGAACAACACCGTGGCCGTG
GAGTTCAATTTGGCCTGCTACGTGAACGCCATGGACCAGGTGTTGATCTT
TCAGAGCGGCTCGCTGAGGGTGGACCACCACTACGACGTAGACGAATCCG
TGGGCGTGGTCTACGAGATGCTTATGCAGAGGATCGAAAACTACCTCAAC
TGCAGCAGCGAGTACGGCATGGCAGAGTGCAGCATCACCAGATTGAAAGT
ACAGGTGAAGAGGATTAGGGTGGAGGCGGACGGTCAGTCAGCGGACTCGT
CCGTCTTCGCCCTACCCCTGCAGCTTCAGGAGGAGGAGGGCCTGACCGCC
ACTACCGGCTGCTCCACCAGCGAGGCAGAGCTTGCCAGTCTGCGCTCCGC
CTACCTGAAGCACTTCCGCGAGTGCAACGGCAACTTCCCGCCCAACATGC
GCGTCAATCTCTACGGACTGCAGCAGTGCAAGACCACCAAGGAGCTGTAT
GTGGTGCCCTATCATATCAGCGAAACCCTCCAGCAGCTGCCCAACAAGAA
CTTCCTCATCCTGAACAATATCATGGGCCAATTCCAGCGGCTCCACGAGC
TCTCCACCCCCGTCAATTCCATCGAAAGGGATCAGACCAGCTCGCCGCTA
AAGGACCTCCACTGCCGGAGGTGTCGCACCCAGTTCTCGCGACGCAGCAA
ACTGCACATCCACCAGAAGCTGCGCTGTGGCCAGGACTTCTCCGTGGACA
GCATGCACGCGGACATCGTGGAGATCTACGAGCAGTGCCTGCCCATCTCG
AGAAGCGTCTTCCAGCACGCCTGCTACGGCATCACCAAGCCCAAGACCAT
GATGCGGAAGGGTCAGTTTGTGCCCATCGAGTGCGACTGGCGCAGCGAGA
GCTCCGTGAAGGTGCAGCACGGCCCGTGTGTCGTCATCAGCAACGCCCAG
CACAATAGTCCTTTTAAATTTTATTAAATAAACGATAACTTTTAAGCACC
CAAAAAAAAAAAAAAA

RE03769.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7271-RA 1403 CG7271-RA 4..1403 1..1400 7000 100 Plus
term-RA 1463 term-RA 106..1461 45..1397 6575 99.1 Plus
term-RA 1463 term-RA 6..45 3..42 155 92.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18578401..18579800 1..1400 6985 99.9 Plus
chr3L 24539361 chr3L 18581940..18583295 1397..45 6535 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18588766..18590165 1..1400 7000 100 Plus
3L 28110227 3L 18592305..18593660 1397..45 6565 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18581866..18583265 1..1400 7000 100 Plus
3L 28103327 3L 18585405..18586760 1397..45 6575 99.1 Minus
3L 28103327 3L 18586821..18586860 42..3 155 92.5 Minus
Blast to na_te.dros performed on 2019-03-16 05:39:41 has no hits.

RE03769.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:40:46 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18578401..18579800 1..1401 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:47:53 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 1..1284 94..1377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:25 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 1..1284 94..1377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:28:45 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 1..1284 94..1377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:54 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 1..1284 94..1377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:04 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 1..1284 94..1377 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:36 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 4..1403 1..1400 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:25 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 4..1403 1..1400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:45 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 8..1407 1..1400 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:55 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 4..1381 1..1378 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:04 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
CG7271-RA 8..1407 1..1400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:46 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18588766..18590165 1..1401 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:46 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18588766..18590165 1..1401 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:46 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18588766..18590165 1..1401 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:45 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18581866..18583265 1..1401 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:48 Download gff for RE03769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18581866..18583265 1..1401 99   Plus

RE03769.hyp Sequence

Translation from 0 to 1376

> RE03769.hyp
SQQLNLVIDTSQCFRAISTFSFRIQSFHISIMFDEPISSFVFTDEETTQT
FHHQWFSQGQLHECATCYSSIDADEPPSQHWLRGGEASQGLHLTKQQQAV
MDIIEARQIETFFFCDESSKDKLEHFMGETCARGIPELLRWMFQNNTVAV
EFNLACYVNAMDQVLIFQSGSLRVDHHYDVDESVGVVYEMLMQRIENYLN
CSSEYGMAECSITRLKVQVKRIRVEADGQSADSSVFALPLQLQEEEGLTA
TTGCSTSEAELASLRSAYLKHFRECNGNFPPNMRVNLYGLQQCKTTKELY
VVPYHISETLQQLPNKNFLILNNIMGQFQRLHELSTPVNSIERDQTSSPL
KDLHCRRCRTQFSRRSKLHIHQKLRCGQDFSVDSMHADIVEIYEQCLPIS
RSVFQHACYGITKPKTMMRKGQFVPIECDWRSESSVKVQHGPCVVISNAQ
HNSPFKFY*

RE03769.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7271-PA 427 CG7271-PA 1..427 32..458 2277 100 Plus
term-PA 428 CG4216-PA 1..428 32..458 2240 98.8 Plus
CG6885-PA 378 CG6885-PA 7..377 38..415 470 27.9 Plus

RE03769.pep Sequence

Translation from 93 to 1376

> RE03769.pep
MFDEPISSFVFTDEETTQTFHHQWFSQGQLHECATCYSSIDADEPPSQHW
LRGGEASQGLHLTKQQQAVMDIIEARQIETFFFCDESSKDKLEHFMGETC
ARGIPELLRWMFQNNTVAVEFNLACYVNAMDQVLIFQSGSLRVDHHYDVD
ESVGVVYEMLMQRIENYLNCSSEYGMAECSITRLKVQVKRIRVEADGQSA
DSSVFALPLQLQEEEGLTATTGCSTSEAELASLRSAYLKHFRECNGNFPP
NMRVNLYGLQQCKTTKELYVVPYHISETLQQLPNKNFLILNNIMGQFQRL
HELSTPVNSIERDQTSSPLKDLHCRRCRTQFSRRSKLHIHQKLRCGQDFS
VDSMHADIVEIYEQCLPISRSVFQHACYGITKPKTMMRKGQFVPIECDWR
SESSVKVQHGPCVVISNAQHNSPFKFY*

RE03769.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23638-PA 368 GF23638-PA 7..368 7..385 500 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15737-PA 427 GG15737-PA 1..427 1..427 2228 95.3 Plus
Dere\GG13660-PA 427 GG13660-PA 1..427 1..427 2228 95.3 Plus
Dere\GG13674-PA 374 GG13674-PA 7..374 7..385 492 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11100-PA 425 GH11100-PA 7..425 3..425 1505 68.2 Plus
Dgri\GH14371-PA 359 GH14371-PA 7..356 7..380 526 32.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7271-PA 427 CG7271-PA 1..427 1..427 2277 100 Plus
term-PA 428 CG4216-PA 1..428 1..427 2240 98.8 Plus
CG6885-PA 378 CG6885-PA 7..377 7..384 470 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13592-PA 419 GI13592-PA 2..418 4..426 1437 67.9 Plus
Dmoj\GI11314-PA 369 GI11314-PA 7..367 7..380 499 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22878-PA 437 GL22878-PA 9..436 3..426 1837 78.4 Plus
Dper\GL24879-PA 235 GL24879-PA 3..234 143..386 305 30.2 Plus
Dper\GL20453-PA 139 GL20453-PA 1..128 1..125 158 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20226-PA 437 GA20226-PA 9..436 3..426 1839 78.6 Plus
Dpse\GA19930-PA 376 GA19930-PA 1..375 1..386 471 29 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14975-PA 427 GM14975-PA 1..427 1..427 2228 96 Plus
Dsec\GM14935-PA 427 GM14935-PA 1..427 1..427 2151 93.4 Plus
Dsec\GM14989-PA 378 GM14989-PA 7..377 7..384 483 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14752-PA 427 GD14752-PA 1..427 1..427 2233 96.3 Plus
Dsim\GD12340-PA 134 GD12340-PA 1..134 294..427 680 91.8 Plus
Dsim\GD12339-PA 134 GD12339-PA 1..118 1..118 626 96.6 Plus
Dsim\GD14766-PA 378 GD14766-PA 7..377 7..384 497 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13931-PA 421 GJ13931-PA 4..420 3..426 1572 68.6 Plus
Dvir\GJ11571-PA 367 GJ11571-PA 7..365 7..380 559 32.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11209-PA 434 GK11209-PA 1..434 1..427 1693 74 Plus
Dwil\GK12077-PA 382 GK12077-PA 8..378 7..380 462 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22069-PA 423 GE22069-PA 1..423 1..427 2217 95.6 Plus
Dyak\GE19957-PA 338 GE19957-PA 1..256 1..262 1158 84 Plus
Dyak\GE19957-PA 338 GE19957-PA 206..338 296..427 620 87.2 Plus
Dyak\GE19971-PA 378 GE19971-PA 7..374 7..381 484 28.4 Plus