BDGP Sequence Production Resources |
Search the DGRC for RE03817
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 38 |
Well: | 17 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14329-RA |
Protein status: | RE03817.pep: validated full length |
Preliminary Size: | 906 |
Sequenced Size: | 1188 |
Gene | Date | Evidence |
---|---|---|
CG14329 | 2001-12-14 | Blastp of sequenced clone |
CG14329 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14329 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14329 | 2008-04-29 | Release 5.5 accounting |
1188 bp (1188 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070941
> RE03817.complete AGTTTGTGCTCATCCCGCCGAGCGTGCAGAAGTCTTTCAGCAATAGAATC GCGTTTTCAATATGAAACTGTTTCTTCTACTCCTTCTGGGAGCCTTGGGC TATTCGTTGGCCTATCCGCGCACCTATAGTTACGAGTATCCCCGCCGAAG GGCCTACTCCACATCGTATTCCGGGAATTCGTATAGCTCTTTGGCCGGTC GGAAGGCTAGGGAAGAAAGTACCACCAGCAAATCGGACAAGGAGAATGCC AAGTTTGCTGGTGCTTCCAATCAGGAATTGGATGAAACCGGTGACGAACG CACACTGCTGCTTAAAAAGAAGCTCAAGAGGTTGGCCAGGCCCTACCTAG GAGGATATGGTGGATATGGCGGATATGGTGGATATGGCGGATATGGAGGA TACGGCGGTGGTCCCTGCTCCCCGTTTGGTCGCGATGCTCGAGGTGGTCA GAATCAGAAGGATCCCGCTGAACAGGGTCGCTTTCTGTTCGACGTGAATG TGGTGAAAGTATATCCCGGTGGATGTCGCGGCTATGGAGGAGGTGGTTTG GGTGGAGGTCTTCTGTCTGATCCTCTTCCACCTGTACAACCCATTCCAGT GCCAGTGCGTCCGTACGCACCATTTGCCACCTGGCTATCGCTCTTTGCTC CAGGAATTCTTAACTCGGCCGTGGTGCCTGGTGTTCCAGTCAGAGATCCT CTAAGAGATCCAGTTCGTCCTGCTGGAGATGCGCAGAGCGATCCTGAAGT GGATCCCAACTATGCGGCACCTCCGCCAGTAAGGCGACCTGTTCCGAATC GTGTGTACTACGATTCTGCGGGAGCGGTAAGTTCATTAACTTTAATATAT TGCGAATTTTATATTTTTATTTATTGTTAATAACTTTTTTCATGCCAGCC TCCTGTGACACCTGCTCAACTAGTTGGAGGCGTGGCCACCACAGTAAACG GAATCATTCAGCAGTTGACTGGACAAGTGCAGCCAGTTTACCAAACGGGA GGCTATCGGTCAAGGGATCAACGAAGCAGCTACGGATAAGTTACTATATA TCGAATTTGTATGTAAATTTGTAAATAGTTTTAAGTAATAATAGTAGCGA TTTTATGTACGAAATACGTTTACAATTATTTAACGAAGATTCCTCCCTCA AATAAAAGAACGAAAGTGTTTGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 13433696..13434867 | 1..1172 | 5860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 17609362..17610533 | 1..1172 | 5860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17350193..17351364 | 1..1172 | 5860 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 13433696..13434047 | 1..352 | 100 | == | Plus |
chr3R | 13434104..13434867 | 409..1173 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 1..765 | 62..826 | 100 | == | Plus |
CG14329-RA | 766..906 | 899..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 1..765 | 62..826 | 100 | == | Plus |
CG14329-RA | 766..906 | 899..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 1..765 | 62..826 | 100 | == | Plus |
CG14329-RA | 766..906 | 899..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 1..765 | 62..826 | 100 | == | Plus |
CG14329-RA | 766..906 | 899..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 766..906 | 899..1039 | 100 | Plus | |
CG14329-RA | 1..765 | 62..826 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 827..1100 | 899..1172 | 100 | Plus | |
CG14329-RA | 1..826 | 1..826 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 827..1100 | 899..1172 | 100 | Plus | |
CG14329-RA | 1..826 | 1..826 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 4..829 | 1..826 | 100 | == | Plus |
CG14329-RA | 830..1103 | 899..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 1..826 | 1..826 | 100 | == | Plus |
CG14329-RA | 827..1100 | 899..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14329-RA | 4..829 | 1..826 | 100 | == | Plus |
CG14329-RA | 830..1103 | 899..1172 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17609362..17610533 | 1..1173 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17609362..17610533 | 1..1173 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17609362..17610533 | 1..1173 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 13435084..13436255 | 1..1173 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17350193..17351364 | 1..1173 | 99 | Plus |
Translation from 61 to 879
> RE03817.pep MKLFLLLLLGALGYSLAYPRTYSYEYPRRRAYSTSYSGNSYSSLAGRKAR EESTTSKSDKENAKFAGASNQELDETGDERTLLLKKKLKRLARPYLGGYG GYGGYGGYGGYGGYGGGPCSPFGRDARGGQNQKDPAEQGRFLFDVNVVKV YPGGCRGYGGGGLGGGLLSDPLPPVQPIPVPVRPYAPFATWLSLFAPGIL NSAVVPGVPVRDPLRDPVRPAGDAQSDPEVDPNYAAPPPVRRPVPNRVYY DSAGAVSSLTLIYCEFYIFIYC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17813-PA | 305 | GF17813-PA | 1..259 | 1..255 | 542 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22351-PA | 304 | GG22351-PA | 1..258 | 1..255 | 722 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18095-PA | 307 | GH18095-PA | 15..261 | 13..255 | 449 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14329-PA | 301 | CG14329-PA | 1..255 | 1..255 | 1372 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24593-PA | 307 | GI24593-PA | 1..261 | 1..255 | 360 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21515-PA | 315 | GL21515-PA | 16..268 | 15..255 | 474 | 65.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26308-PA | 266 | GA26308-PA | 16..244 | 15..232 | 384 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15247-PA | 301 | GM15247-PA | 1..255 | 1..255 | 1241 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19172-PA | 299 | GD19172-PA | 1..253 | 1..255 | 1242 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22658-PA | 312 | GJ22658-PA | 13..266 | 13..255 | 359 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12080-PA | 308 | GK12080-PA | 37..260 | 35..255 | 447 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25484-PA | 298 | GE25484-PA | 1..252 | 1..255 | 1228 | 96.1 | Plus |
Translation from 61 to 879
> RE03817.hyp MKLFLLLLLGALGYSLAYPRTYSYEYPRRRAYSTSYSGNSYSSLAGRKAR EESTTSKSDKENAKFAGASNQELDETGDERTLLLKKKLKRLARPYLGGYG GYGGYGGYGGYGGYGGGPCSPFGRDARGGQNQKDPAEQGRFLFDVNVVKV YPGGCRGYGGGGLGGGLLSDPLPPVQPIPVPVRPYAPFATWLSLFAPGIL NSAVVPGVPVRDPLRDPVRPAGDAQSDPEVDPNYAAPPPVRRPVPNRVYY DSAGAVSSLTLIYCEFYIFIYC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14329-PA | 301 | CG14329-PA | 1..255 | 1..255 | 1372 | 100 | Plus |