BDGP Sequence Production Resources |
Search the DGRC for RE03925
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 39 |
Well: | 25 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Papss-RE |
Protein status: | RE03925.pep: gold |
Sequenced Size: | 2409 |
Gene | Date | Evidence |
---|---|---|
Papss | 2009-06-22 | Manual selection by Sue Celniker |
2409 bp assembled on 2009-10-09
GenBank Submission: BT100002.1
> RE03925.complete TGTTTGCTTTCGACGTTCGTCGCGTGTCTATGACGAAATCCATCCAACTC GAGCTCGGTTTTCGCGCAATCTGAGTCGAATCCGCATCGCTATCAGTGCT CAATGTAAAGTAATTAAACCATTAAGGAGAGCTTTACTTCGGAATTACTT TGACTGGATTTGAGTGCGAAATAAAATATAATAACAATGCCGAATCCGCC AATTGGATTTTATCCCCATATCAAAAGAAGGTGCCTACAGGTGGCGACGA ATGTGACCGAGCAAAAGCACCATGTCACCAGGGAGACGCGCGGCAAGAAT TTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGCCT CAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTACCTGG TATCCCGGGGCATTCCGGCCTACGGGTTGGACGGCGACAACATTCGCACC GGACTGAACAAGAACCTGGGCTTCACGCCCGCCGATCGCGAGGAAAACAT TCGCCGCGTGGGCGAGGTGGCCAAGTTGTTTGCCGACAGCGGAGTGGTGG CCATCTGCAGCTTCGTTTCGCCCTTCGCCGACGATCGTGAGATGGCGCGC AAGATCCACAAGGATGCGGGTCTGAAGTTCTATGAGATATTCGTGGACAC ACCGCTGGATGTGTGCGAAACCCGGGACGTGAAGGGTCTATACAAGAAGG CGCGCGAGGGCGTAATCAAAGGATTCACGGGCATTACGCAGGAGTACGAG CGACCCCAGATGCCGGAGCTGGTGGTCAACACGCACGGCTACACGGTGCG CGAGTCCACTCAGAAGCTGGTGACGCTGCTCGAACAGGAGGGCATTATTC CACGCTCGCTGCGCGACGTAGACCTGCTGCCGGAGCTTTATCCCAGCGAA TCCATTGCCACGGAGGCACTGCGTCACGAGGCCGAGTCGCTGCAAGCCAT CGAAATCAGCACCGTGGAGCTGCAGTGGGTGCAAGTACTGGCCGAGGGAT GGGCATATCCACTGCGCGGCTTCATGCGCGAGGATGAGTACCTGCAGACG CTGCACTTCAACACACTTCAGAGCGGCATGGACGGTTCCTATCGCGAGAA CCACTCGGTGCCCATTGTTTTGAGCGCCACGCAGGCGGACAAGGATCGTC TGGACGGCTGCTCCTCGCTGACTCTCAAATACCAAGGCAAGGCGGTAGCC ATTCTGCGGCGTCCCGAGTTCTACTTTCAGCGTAAGGAGGAGCGGCTGGC CCGCCAGTTCGGCACCAGCAATCCCAATCACCCGTACAGTAAGCAGGTCT ACGAGTCCGGGGATTATTTGGTCGGTGGCGATCTGGCAGTGATCGAACGT ATCCGCTGGGAGGACGGACTGGATCAGTACAGGCTGACTCCCAACGAGTT AAGGCGCCGCTTTAAGGAGCTGAATGCCGACGCCATCTTCGCCTTTCAGT TGCGCAATCCCATCCACAACGGCCATGCCCTGCTCATGCAAGACACTCGC CGCCAGCTGCTGGAGCGCGGCTTCAAGCAGCCAGTGCTGCTGCTGCATCC TCTGGGTGGCTGGACCAAGGACGACGATGTGCCGCTGGATGTGCGCATGA AGCAGCACCAGGCCGTGCTCGACGCAGGTGTCTTGCGACGAGAGGACACA GTGCTGGCCATCTTCCCCTCGCCAATGATGTACGCCGGTCCCACGGAGGT GCAGTGGCACGCAAAGGCGCGCATGAACGCCGGTGCGAACTTCTACATTG TAGGCCGTGATCCGGCTGGCATGCCGCATCCGGCCAAGGAAACTTATCCG GATGGAAACCTATACGATGCCACCCATGGTGCGCGAGTGCTTAAGATGGC CCAGGGACTAGACAGCATGGAGATCCTGCCCTTCCGTGTTGCTGCCTATG ACAAGAGCGCCAGTAGAATGGCCTTCTTCGAGCCCAAGAGGAAGGATGAG TTTGAGTTCATCTCGGGAACCAAGATGCGCACCCTGGCCAAAACGGGAGC CAGTCCGCCGGATGGCTTCATGGAACCGGAGGCTTGGCGCATCCTGGCCA CCTACTACCAGAACCTGCCGCAGTCGTAACCCGCTGCTCACACTCGATCC GCAACGTGCAATTCCTCCTAGTTATAGCTCGTGTGCTTATTATACATAAA TATTTCAAGCTAAAGGCGCTTACCACTTACCACATCTTTTTTCCATTGTT CTAAGCCGAAATCCGTGGCTGTCCCCGTGTGTGAATGTTGTGCTCCTCCT AACTAAATGTTCGTATCGTACAATCTACTTGTATCTACACTTAAGTCACC CAATTCTTTTTATCTTAAGCAAAATATCGTGCAGCTATTTTGTGGACGGT TTTTAATACATATATAAATAATAAAATAGAAAATTACTTATCGAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19848178..19849704 | 346..1872 | 7575 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 19849765..19850285 | 1871..2391 | 2605 | 100 | Plus |
chr3L | 24539361 | chr3L | 19837532..19837761 | 2..231 | 1135 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 19847741..19847857 | 231..347 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19858814..19860340 | 346..1872 | 7620 | 99.9 | Plus |
3L | 28110227 | 3L | 19860403..19860927 | 1871..2395 | 2610 | 99.8 | Plus |
3L | 28110227 | 3L | 19848169..19848398 | 2..231 | 1135 | 99.6 | Plus |
3L | 28110227 | 3L | 19858377..19858493 | 231..347 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19851914..19853440 | 346..1872 | 7620 | 99.9 | Plus |
3L | 28103327 | 3L | 19853503..19854027 | 1871..2395 | 2610 | 99.8 | Plus |
3L | 28103327 | 3L | 19841269..19841498 | 2..231 | 1135 | 99.5 | Plus |
3L | 28103327 | 3L | 19851477..19851593 | 231..347 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19837531..19837761 | 1..231 | 99 | -> | Plus |
chr3L | 19847742..19847856 | 232..346 | 100 | -> | Plus |
chr3L | 19848179..19849704 | 347..1872 | 99 | -> | Plus |
chr3L | 19849767..19850242 | 1873..2348 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RF | 1..1893 | 187..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RF | 1..1893 | 187..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RE | 1..1893 | 187..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RE | 1..1893 | 187..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RF | 333..2725 | 1..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RF | 333..2725 | 1..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RE | 4..2396 | 1..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RE | 4..2396 | 1..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19848168..19848398 | 1..231 | 99 | -> | Plus |
3L | 19858378..19858492 | 232..346 | 100 | -> | Plus |
3L | 19858815..19860340 | 347..1872 | 99 | -> | Plus |
3L | 19860405..19860925 | 1873..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19848168..19848398 | 1..231 | 99 | -> | Plus |
3L | 19858378..19858492 | 232..346 | 100 | -> | Plus |
3L | 19858815..19860340 | 347..1872 | 99 | -> | Plus |
3L | 19860405..19860925 | 1873..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19848168..19848398 | 1..231 | 99 | -> | Plus |
3L | 19858378..19858492 | 232..346 | 100 | -> | Plus |
3L | 19858815..19860340 | 347..1872 | 99 | -> | Plus |
3L | 19860405..19860925 | 1873..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19851478..19851592 | 232..346 | 100 | -> | Plus |
arm_3L | 19841268..19841498 | 1..231 | 99 | -> | Plus |
arm_3L | 19851915..19853440 | 347..1872 | 99 | -> | Plus |
arm_3L | 19853505..19854025 | 1873..2393 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19841268..19841498 | 1..231 | 99 | -> | Plus |
3L | 19851478..19851592 | 232..346 | 100 | -> | Plus |
3L | 19851915..19853440 | 347..1872 | 99 | -> | Plus |
3L | 19853505..19854025 | 1873..2393 | 99 | Plus |
Translation from 186 to 2078
> RE03925.pep MPNPPIGFYPHIKRRCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTV WLTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPAD REENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYE IFVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTH GYTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAE SLQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDG SYRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRK EERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRL TPNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPV LLLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYA GPTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGAR VLKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTL AKTGASPPDGFMEPEAWRILATYYQNLPQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23598-PA | 629 | GF23598-PA | 12..629 | 13..630 | 3217 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16064-PA | 629 | GG16064-PA | 12..628 | 13..629 | 3277 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14663-PA | 629 | GH14663-PA | 7..629 | 11..630 | 3062 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Papss-PH | 630 | CG8363-PH | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PF | 630 | CG8363-PF | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PE | 630 | CG8363-PE | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PG | 629 | CG8363-PG | 12..629 | 13..630 | 3223 | 99.5 | Plus |
Papss-PB | 629 | CG8363-PB | 12..629 | 13..630 | 3223 | 99.5 | Plus |
Papss-PA | 629 | CG8363-PA | 12..629 | 13..630 | 3223 | 99.5 | Plus |
Papss-PC | 629 | CG8363-PC | 12..629 | 13..630 | 3223 | 99.5 | Plus |
Papss-PD | 657 | CG8363-PD | 43..657 | 16..630 | 3221 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11647-PA | 629 | GI11647-PA | 12..629 | 13..630 | 3059 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15741-PA | 625 | GL15741-PA | 12..625 | 13..630 | 3042 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21020-PA | 629 | GA21020-PA | 12..629 | 13..630 | 3120 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19669-PA | 533 | GM19669-PA | 92..487 | 15..410 | 2095 | 99.2 | Plus |
Dsec\GM19674-PA | 77 | GM19674-PA | 1..77 | 554..630 | 409 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14833-PA | 595 | GD14833-PA | 12..595 | 13..630 | 3069 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11328-PA | 630 | GJ11328-PA | 1..630 | 1..630 | 3147 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16974-PA | 658 | GK16974-PA | 44..658 | 16..630 | 3123 | 93.2 | Plus |
Translation from 186 to 2078
> RE03925.hyp MPNPPIGFYPHIKRRCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTV WLTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPAD REENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYE IFVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTH GYTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAE SLQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDG SYRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRK EERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRL TPNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPV LLLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYA GPTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGAR VLKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTL AKTGASPPDGFMEPEAWRILATYYQNLPQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Papss-PH | 630 | CG8363-PH | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PF | 630 | CG8363-PF | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PE | 630 | CG8363-PE | 1..630 | 1..630 | 3310 | 100 | Plus |
Papss-PG | 629 | CG8363-PG | 12..629 | 13..630 | 3223 | 99.5 | Plus |
Papss-PB | 629 | CG8363-PB | 12..629 | 13..630 | 3223 | 99.5 | Plus |