BDGP Sequence Production Resources |
Search the DGRC for RE04029
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 40 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | hd-RA |
Protein status: | RE04029.pep: gold |
Preliminary Size: | 1782 |
Sequenced Size: | 1940 |
Gene | Date | Evidence |
---|---|---|
CG2669 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2669 | 2002-06-10 | Blastp of sequenced clone |
CG2669 | 2003-01-01 | Sim4 clustering to Release 3 |
hd | 2008-04-29 | Release 5.5 accounting |
hd | 2008-08-15 | Release 5.9 accounting |
hd | 2008-12-18 | 5.12 accounting |
1940 bp (1940 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121655
> RE04029.complete AATCGAAAGATTTCACACCCCTAGTTGCGCGCCATAATTTTTTGTGATAT TTGCAAACGTTTTGAAGATATTTGCAGTTCACAAAGTACTTAAATAATCC GTGAAGGTCCTGTGCGCGAACCAAGACATTGAACATGTCCACCGAAGCGA GTGTGGCTTCCAAATGGACGCGCCCAGATGACTTCATCAAACTGCAGCGG CTCAAGCAGAAGAAGAACAAATTGGCAGCCCGCGTGAGCAACAACAACAA TAGGCGGCCAAGACACCAAGTGGATGAGACGGATAAAAGCAAGCTACTGG AGGCTAAGCTCGCCCAGAAGCGAAAAAATCCGTTTGCGAAATCCACAGCT GATGCCAAGAAACTGCGCGTTGATCCGCAACTGGCGGACCTCGAACCAGT GGTCACTGCCTCCTCCTGCTTTGTGCGGGAAACGCCCACGCGCCCGGCGC CCGCCAAATTCGTGCTCCAGAAGTACGACCCGCAGGCCTTTGCCAAGCTC TTCCAGCATCCCCAAATCAACGCTGAGGACGAGGACGATGCGGAGTTGGC CGCCCGGCAGAAGCACACCGCCCACCTACCTGTGGACTGGTCCCTGAAGA CGCGAGCCCGTTTCTTCTGTCCCACGGAACTGCCTGCCATCCAACTGAAG ACCTCGCAGCTGGCCAGCGGACTCACCAGCTTCGTGCGCTGCATGGACCC GCAGCGAACGGAGAGCACGCTGGATATCTCGGACGCAACGCGGTTCAACC AATGCAATTACTACTGGCAGCACCCGCACCTGCCCTGGCTGACGCTCTAC CCGCGCACCGCCAAGGAGAACGTGGGCGTGGTGGTGGGTGAGCGGGAGCG CAAGGCCCTGGCCGAGGAGTGGGACTTCAGCTTCCGGGGCCTATTTCAGC TGCTGCGTGCCCGCCAGTGCCCGTACTTCTACCTGTGTGCCAACACTTTT ACGGTGCTGTTCCGAGCTGCCGGAGTTGGCGGTCGGCCGGAGAGCCACGC CTTGGTCACGCCGTCGACTCGGGGAATGCGGCAAGCTCTGCGACAGGAGG GGATCGAGTTCAGCATGCCTCTTAAGAGCGATAACAGTGGAAACGCGCAC GACAACAGTTTTAACGAGGAGAGCACTACCACCTCGCTAGGTCCAGAAGC GGGCGAAGATGCTCCTCCGCCGGCACAGGAAGATGAAGACGACGACGAGG ACTGGCTGGAGAGCTTGGGCGTGGATGAGCGTGAGCTGCGACGTATCCAG TCCTCCCATGCCAGGAAGCAACAAGCTGCCGAAATGCGAGAGGACTTTAG CGACAACTCCTTGCTGCTGGTCGATGGCGTGGAGTGCCAGGGATTCTTTA GCTATCTGCTAAATGCCAAGAGTGCCATCAGCACAGTGGGCCGTCTGGCC GGAGTGCCTCCCACTCTGCTGTCGCCAGTGGCCTTCCCCAAGGCCACCAT GCAGCACTTGGTTCCGCGGTCCAAGAAAGTGCGTCTGGATGGCGTCGACT ACTTTAGCATAGACATTAAGGGCCTAATCCTACCTACATTCCTGCCCAGT GTGGCGGAGCTGCTGTCCGAGACGCGCCAGATGTTTAGCTCCACGCTGGC CAGCAGCATCAATACGCTGGCCTTTAGCAAGGCCACCCAAAAGCTGCTTG AAACTCCGGAGACGCCACAGTCAGATGCGGAAGGAGAAGATGCCGCCGGG CAGGTCTTTGGCGAGCAGAATCTTTCGGAGTGTGGTCTGCTGCCGGCAGT AGTTGGCTCCATCTGCCGCACGGGCCAACATGCCGTAGGTCTTTTAGAGC GCGTTTGCTATCAAAGAGATGAGGGATATGCTTGGAGCTAGACACCAAGT GCTCCTCACACTAGAGCAGCTTTGTTTTCCTAATCTGTACGTCTGTTATG TGAAATAAAATATTGTAGTAGAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1198251..1199834 | 1924..341 | 7920 | 100 | Minus |
chr3R | 27901430 | chr3R | 1200109..1200290 | 182..1 | 910 | 100 | Minus |
chr3R | 27901430 | chr3R | 1199892..1200049 | 340..183 | 790 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 196..249 | 119 | 70.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1199892..1200049 | 183..340 | 100 | <- | Minus |
chr3R | 1200109..1200290 | 1..182 | 100 | Minus | |
chr3R | 1198251..1199834 | 341..1924 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1707 | 135..1841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1707 | 135..1841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1707 | 135..1841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1707 | 135..1841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1707 | 135..1841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1924 | 1..1924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1924 | 1..1924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 4..1927 | 1..1924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 1..1924 | 1..1924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hd-RA | 4..1927 | 1..1924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5372592..5374175 | 341..1924 | 100 | <- | Minus |
3R | 5374233..5374390 | 183..340 | 100 | <- | Minus |
3R | 5374450..5374631 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5372592..5374175 | 341..1924 | 100 | <- | Minus |
3R | 5374233..5374390 | 183..340 | 100 | <- | Minus |
3R | 5374450..5374631 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5372592..5374175 | 341..1924 | 100 | <- | Minus |
3R | 5374233..5374390 | 183..340 | 100 | <- | Minus |
3R | 5374450..5374631 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1198314..1199897 | 341..1924 | 100 | <- | Minus |
arm_3R | 1199955..1200112 | 183..340 | 100 | <- | Minus |
arm_3R | 1200172..1200353 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5113423..5115006 | 341..1924 | 100 | <- | Minus |
3R | 5115064..5115221 | 183..340 | 100 | <- | Minus |
3R | 5115281..5115462 | 1..182 | 100 | Minus |
Translation from 134 to 1840
> RE04029.hyp MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA VGLLERVCYQRDEGYAWS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hd-PA | 568 | CG2669-PA | 1..568 | 1..568 | 2949 | 100 | Plus |
Translation from 134 to 1840
> RE04029.pep MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA VGLLERVCYQRDEGYAWS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17717-PA | 571 | GF17717-PA | 1..571 | 1..568 | 2554 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11051-PA | 568 | GG11051-PA | 1..568 | 1..568 | 2813 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22630-PA | 569 | GH22630-PA | 1..569 | 1..568 | 2100 | 73.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hd-PA | 568 | CG2669-PA | 1..568 | 1..568 | 2949 | 100 | Plus |
hd-PB | 568 | CG2669-PB | 1..568 | 1..568 | 2949 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10205-PA | 581 | GI10205-PA | 1..581 | 1..568 | 2100 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22185-PA | 566 | GL22185-PA | 1..566 | 1..568 | 2388 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15418-PA | 566 | GA15418-PA | 1..566 | 1..568 | 2388 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10642-PA | 1816 | GM10642-PA | 1623..1786 | 26..189 | 805 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19621-PA | 568 | GD19621-PA | 1..568 | 1..568 | 2937 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24723-PA | 580 | GJ24723-PA | 1..580 | 1..568 | 2117 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11227-PA | 565 | GK11227-PA | 1..565 | 1..568 | 2155 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25290-PA | 565 | GE25290-PA | 1..565 | 1..568 | 2755 | 92.3 | Plus |