Clone RE04047 Report

Search the DGRC for RE04047

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:40
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG4789-RA
Protein status:RE04047.pep: gold
Preliminary Size:919
Sequenced Size:934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4789 2001-12-14 Blastp of sequenced clone
CG4789 2002-01-01 Sim4 clustering to Release 2
CG4789 2003-01-01 Sim4 clustering to Release 3
CG4789 2008-04-29 Release 5.5 accounting
CG4789 2008-08-15 Release 5.9 accounting
CG4789 2008-12-18 5.12 accounting

Clone Sequence Records

RE04047.complete Sequence

934 bp (934 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070945

> RE04047.complete
AATCAAATGGCGATGAATAATCGAGTGCGAATTGTTGTGGTTGGCGATTC
GGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCACAACGAAGCCC
TCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGTGAAGATGCAT
CCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCGTGGAGCTGTT
CGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGCGTCTTCTATG
CGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAACGCCAAGTCG
CAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACAAGGAGGGCAA
GGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCGCCGCCCAGCC
CGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGGCCACATTCTC
TTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTATCCTGGTCAT
GGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCCAAAATGGGGG
TGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGAGGAGATTTGG
CTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCACTGATGCCGT
GAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGCAAAGCGCTGC
GCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGTCAGTCCGCCC
GACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAGACAGCGTCTT
GCCCCTCCTGGATACCCAAGACCTCAAGTGACTAATGCACTCAATTCAGT
AGTTCTAAGTTGTAGTTATCGTACGGGAAGCATTACAAAAAGAAACGATT
AATTCCCATTATAAAACCAAAAAAAAAAAAAAAA

RE04047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 965 CG4789-RA 14..929 1..916 4580 100 Plus
CG4789.a 1236 CG4789.a 285..1200 1..916 4580 100 Plus
CG9125-RA 1380 CG9125-RA 1294..1380 916..830 435 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16690713..16691232 52..571 2600 100 Plus
chrX 22417052 chrX 16691297..16691643 570..916 1705 99.4 Plus
chrX 22417052 chrX 16690599..16690652 1..54 270 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 52..571 2600 100 Plus
X 23542271 X 16801652..16801998 570..916 1735 100 Plus
X 23542271 X 16800954..16801007 1..54 270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16809166..16809685 52..571 2600 100 Plus
X 23527363 X 16809750..16810096 570..916 1735 100 Plus
X 23527363 X 16809052..16809105 1..54 270 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:42:06 has no hits.

RE04047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:42:47 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16690599..16690650 1..52 100 -> Plus
chrX 16690714..16691232 53..571 100 -> Plus
chrX 16691299..16691645 572..918 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:06 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 7..831 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:01 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 7..831 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:20 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 7..831 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:36 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 7..831 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:26 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 7..831 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:21 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..915 1..915 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:00 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 48..965 1..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:20 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 48..965 1..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:36 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..915 1..915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:26 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 25..942 1..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:47 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
X 16800954..16801005 1..52 100 -> Plus
X 16801069..16801587 53..571 100 -> Plus
X 16801654..16802000 572..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:47 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
X 16800954..16801005 1..52 100 -> Plus
X 16801069..16801587 53..571 100 -> Plus
X 16801654..16802000 572..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:47 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
X 16800954..16801005 1..52 100 -> Plus
X 16801069..16801587 53..571 100 -> Plus
X 16801654..16802000 572..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:20 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16695687..16696033 572..918 99   Plus
arm_X 16694987..16695038 1..52 100 -> Plus
arm_X 16695102..16695620 53..571 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:34 Download gff for RE04047.complete
Subject Subject Range Query Range Percent Splice Strand
X 16809752..16810098 572..918 99   Plus
X 16809167..16809685 53..571 100 -> Plus
X 16809052..16809103 1..52 100 -> Plus

RE04047.hyp Sequence

Translation from 0 to 830

> RE04047.hyp
NQMAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMH
PFREGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKS
QRQLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHIL
FDMEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIW
LNCRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPP
DRRRFGPTSAKMEDSVLPLLDTQDLK*

RE04047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 274 CG4789-PA 1..274 3..276 1430 100 Plus

RE04047.pep Sequence

Translation from 6 to 830

> RE04047.pep
MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF
REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR
QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD
MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN
CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR
RRFGPTSAKMEDSVLPLLDTQDLK*

RE04047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21747-PA 301 GF21747-PA 1..301 3..274 998 68.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19080-PA 276 GG19080-PA 1..276 1..274 1093 80.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12699-PA 272 GH12699-PA 1..272 3..274 987 67 Plus
Dgri\GH12019-PA 202 GH12019-PA 1..143 1..132 156 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 274 CG4789-PA 1..274 1..274 1430 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14464-PA 272 GI14464-PA 1..272 3..274 949 67.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18279-PA 182 GL18279-PA 3..101 4..102 441 78.8 Plus
Dper\GL12949-PA 152 GL12949-PA 21..147 7..107 155 33.1 Plus
Dper\GL18279-PA 182 GL18279-PA 94..182 200..274 141 42.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18434-PA 281 GA18434-PA 3..281 4..274 977 66.7 Plus
Dpse\GA22937-PA 238 GA22937-PA 21..238 7..229 226 29.3 Plus
Dpse\GA23936-PA 223 GA23936-PA 18..217 8..226 211 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13469-PA 279 GM13469-PA 7..279 2..274 1292 93.4 Plus
Dsec\GM18198-PA 242 GM18198-PA 12..229 7..226 213 28.9 Plus
Dsec\GM11294-PA 206 GM11294-PA 9..106 8..110 150 35 Plus
Dsec\GM11425-PA 169 GM11425-PA 9..106 8..110 149 35 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17309-PA 279 GD17309-PA 7..279 2..274 1284 93.4 Plus
Dsim\GD16021-PA 206 GD16021-PA 9..106 8..110 145 34 Plus
Dsim\GD16978-PA 207 GD16978-PA 9..106 8..110 144 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18799-PA 273 GJ18799-PA 1..273 3..274 964 69.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15525-PA 286 GK15525-PA 1..286 3..274 1018 70.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17627-PA 276 GE17627-PA 1..276 1..274 1108 80.4 Plus
Dyak\GE15029-PA 240 GE15029-PA 12..237 7..247 250 30.5 Plus