BDGP Sequence Production Resources |
Search the DGRC for RE04047
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 40 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4789-RA |
Protein status: | RE04047.pep: gold |
Preliminary Size: | 919 |
Sequenced Size: | 934 |
Gene | Date | Evidence |
---|---|---|
CG4789 | 2001-12-14 | Blastp of sequenced clone |
CG4789 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4789 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4789 | 2008-04-29 | Release 5.5 accounting |
CG4789 | 2008-08-15 | Release 5.9 accounting |
CG4789 | 2008-12-18 | 5.12 accounting |
934 bp (934 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070945
> RE04047.complete AATCAAATGGCGATGAATAATCGAGTGCGAATTGTTGTGGTTGGCGATTC GGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCACAACGAAGCCC TCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGTGAAGATGCAT CCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCGTGGAGCTGTT CGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGCGTCTTCTATG CGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAACGCCAAGTCG CAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACAAGGAGGGCAA GGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCGCCGCCCAGCC CGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGGCCACATTCTC TTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTATCCTGGTCAT GGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCCAAAATGGGGG TGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGAGGAGATTTGG CTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCACTGATGCCGT GAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGCAAAGCGCTGC GCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGTCAGTCCGCCC GACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAGACAGCGTCTT GCCCCTCCTGGATACCCAAGACCTCAAGTGACTAATGCACTCAATTCAGT AGTTCTAAGTTGTAGTTATCGTACGGGAAGCATTACAAAAAGAAACGATT AATTCCCATTATAAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16690713..16691232 | 52..571 | 2600 | 100 | Plus |
chrX | 22417052 | chrX | 16691297..16691643 | 570..916 | 1705 | 99.4 | Plus |
chrX | 22417052 | chrX | 16690599..16690652 | 1..54 | 270 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16690599..16690650 | 1..52 | 100 | -> | Plus |
chrX | 16690714..16691232 | 53..571 | 100 | -> | Plus |
chrX | 16691299..16691645 | 572..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..825 | 7..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..825 | 7..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..825 | 7..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..825 | 7..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..825 | 7..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..915 | 1..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 48..965 | 1..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 48..965 | 1..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 1..915 | 1..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4789-RA | 25..942 | 1..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16800954..16801005 | 1..52 | 100 | -> | Plus |
X | 16801069..16801587 | 53..571 | 100 | -> | Plus |
X | 16801654..16802000 | 572..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16800954..16801005 | 1..52 | 100 | -> | Plus |
X | 16801069..16801587 | 53..571 | 100 | -> | Plus |
X | 16801654..16802000 | 572..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16800954..16801005 | 1..52 | 100 | -> | Plus |
X | 16801069..16801587 | 53..571 | 100 | -> | Plus |
X | 16801654..16802000 | 572..918 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16695687..16696033 | 572..918 | 99 | Plus | |
arm_X | 16694987..16695038 | 1..52 | 100 | -> | Plus |
arm_X | 16695102..16695620 | 53..571 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16809752..16810098 | 572..918 | 99 | Plus | |
X | 16809167..16809685 | 53..571 | 100 | -> | Plus |
X | 16809052..16809103 | 1..52 | 100 | -> | Plus |
Translation from 0 to 830
> RE04047.hyp NQMAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMH PFREGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKS QRQLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHIL FDMEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIW LNCRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPP DRRRFGPTSAKMEDSVLPLLDTQDLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4789-PA | 274 | CG4789-PA | 1..274 | 3..276 | 1430 | 100 | Plus |
Translation from 6 to 830
> RE04047.pep MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR RRFGPTSAKMEDSVLPLLDTQDLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21747-PA | 301 | GF21747-PA | 1..301 | 3..274 | 998 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19080-PA | 276 | GG19080-PA | 1..276 | 1..274 | 1093 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12699-PA | 272 | GH12699-PA | 1..272 | 3..274 | 987 | 67 | Plus |
Dgri\GH12019-PA | 202 | GH12019-PA | 1..143 | 1..132 | 156 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4789-PA | 274 | CG4789-PA | 1..274 | 1..274 | 1430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14464-PA | 272 | GI14464-PA | 1..272 | 3..274 | 949 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18279-PA | 182 | GL18279-PA | 3..101 | 4..102 | 441 | 78.8 | Plus |
Dper\GL12949-PA | 152 | GL12949-PA | 21..147 | 7..107 | 155 | 33.1 | Plus |
Dper\GL18279-PA | 182 | GL18279-PA | 94..182 | 200..274 | 141 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18434-PA | 281 | GA18434-PA | 3..281 | 4..274 | 977 | 66.7 | Plus |
Dpse\GA22937-PA | 238 | GA22937-PA | 21..238 | 7..229 | 226 | 29.3 | Plus |
Dpse\GA23936-PA | 223 | GA23936-PA | 18..217 | 8..226 | 211 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13469-PA | 279 | GM13469-PA | 7..279 | 2..274 | 1292 | 93.4 | Plus |
Dsec\GM18198-PA | 242 | GM18198-PA | 12..229 | 7..226 | 213 | 28.9 | Plus |
Dsec\GM11294-PA | 206 | GM11294-PA | 9..106 | 8..110 | 150 | 35 | Plus |
Dsec\GM11425-PA | 169 | GM11425-PA | 9..106 | 8..110 | 149 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17309-PA | 279 | GD17309-PA | 7..279 | 2..274 | 1284 | 93.4 | Plus |
Dsim\GD16021-PA | 206 | GD16021-PA | 9..106 | 8..110 | 145 | 34 | Plus |
Dsim\GD16978-PA | 207 | GD16978-PA | 9..106 | 8..110 | 144 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18799-PA | 273 | GJ18799-PA | 1..273 | 3..274 | 964 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15525-PA | 286 | GK15525-PA | 1..286 | 3..274 | 1018 | 70.6 | Plus |