BDGP Sequence Production Resources |
Search the DGRC for RE04130
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 41 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15739-RA |
Protein status: | RE04130.pep: gold |
Preliminary Size: | 984 |
Sequenced Size: | 1428 |
Gene | Date | Evidence |
---|---|---|
CG15739 | 2001-12-14 | Blastp of sequenced clone |
CG15739 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15739 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15739 | 2008-04-29 | Release 5.5 accounting |
CG15739 | 2008-08-15 | Release 5.9 accounting |
CG15739 | 2008-12-18 | 5.12 accounting |
1428 bp (1428 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070946
> RE04130.complete AGTTGGCTGACGACCGTGATCGCGATAGCAACACTTTCACTCACCAGAAC GGATTGCAATGGCCAAACCCCAGCACATTTTGCAGCTAAGCCAGGAGCAG CGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGACATCGATGG CGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGACGGATATG CCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCAACAACAGC GTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATCGGGATGCA GGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGTTAGCTATC TGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCAGCCAGTCG TTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGACGGGCCCAA CGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACATCTTTGGCA AGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATCTGACTTCC CCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAGTGTATGCT CATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGAAGTGAACA TCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCAGTGGCAAG CAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGATCTGCTTGT CGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGATCGGAGATA TGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCCAAACGCTG CTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCCGAGACGGA TCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGATGTGGCCC AGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCTAGACGGCGTCCGGCGGA GGAGATCGAAAAACGATATATCCATTGGCTATAGCTGTACCTGGGTACCT GGGTAGCTGATATAGTGTCGTATTCCTAACCAGATCACATTCTGTCTGCG AAATTTGAATCATAGTAAGCAAACAGAGTTGACGAACTTGGGAGTTCCAG GAAAACAAAACCACTGCAACCATTTGGTCGTAAAAGATCCATAGATGTAC AGTGCATATAAACAAATAAACAATATATATGTATATAGTCTAGCTGAAAC AATGCACTATATTTTATTAGCTAAAATATATGTACACAATTACTAATGAC ATTAGAGACAAGCGATCGAACTTTGGGATACCCCGCAATTCACAGTGTAA AGAGATTTAAGGTTGTGAACAAATAAAAAGTTTAGTTTTATTTATAAATT TCGCCAAAAAAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15739-RA | 1667 | CG15739-RA | 256..1667 | 1..1412 | 7060 | 100 | Plus |
CG15739.a | 1577 | CG15739.a | 226..1577 | 61..1412 | 6760 | 100 | Plus |
CG15739.a | 1577 | CG15739.a | 125..186 | 1..62 | 310 | 100 | Plus |
CG10352.a | 1387 | CG10352.a | 1340..1387 | 1412..1365 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11765515..11766483 | 445..1413 | 4830 | 99.9 | Plus |
chrX | 22417052 | chrX | 11765010..11765394 | 61..445 | 1910 | 99.7 | Plus |
chrX | 22417052 | chrX | 11764572..11764633 | 1..62 | 310 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5657..5811 | 1167..1316 | 123 | 57.1 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 38..94 | 1237..1180 | 116 | 69 | Minus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 7887..7943 | 1237..1180 | 116 | 69 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11764572..11764632 | 1..61 | 100 | -> | Plus |
chrX | 11765011..11765394 | 62..445 | 99 | -> | Plus |
chrX | 11765516..11766483 | 446..1413 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..927 | 59..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..927 | 59..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..927 | 59..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..927 | 59..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..927 | 59..985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..1412 | 1..1412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 125..1528 | 1..1404 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 125..1529 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 1..1412 | 1..1412 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15739-RA | 125..1529 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11873443..11873503 | 1..61 | 100 | -> | Plus |
X | 11873882..11874265 | 62..445 | 100 | -> | Plus |
X | 11874387..11875353 | 446..1413 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11873443..11873503 | 1..61 | 100 | -> | Plus |
X | 11873882..11874265 | 62..445 | 100 | -> | Plus |
X | 11874387..11875353 | 446..1413 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11873443..11873503 | 1..61 | 100 | -> | Plus |
X | 11873882..11874265 | 62..445 | 100 | -> | Plus |
X | 11874387..11875353 | 446..1413 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11767476..11767536 | 1..61 | 100 | -> | Plus |
arm_X | 11767915..11768298 | 62..445 | 100 | -> | Plus |
arm_X | 11768420..11769386 | 446..1413 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11881980..11882363 | 62..445 | 100 | -> | Plus |
X | 11882485..11883451 | 446..1413 | 99 | Plus | |
X | 11881541..11881601 | 1..61 | 100 | -> | Plus |
Translation from 58 to 984
> RE04130.hyp MAKPQHILQLSQEQRSSVVDSFDRVVSDIDGVLWTFEQSIPRAADGYAAL EQMGKHLTFLTNNSVRTSEQCVKLFAKIGMQVHPEQIWHPAKSIVSYLQS IKFEGLIYIIASQSFKTVLREAGFQLLDGPNEFIEESYASLAEHIFGKEP VRAVIIDVDFNLTSPKILRAHLYLRHPECMLIEGATDRLLPVAKEVNIVG PGAFASILVEASGKQPITLGKPGRELGDLLVEHYQIVQPSRVLMIGDMLA QDVSFGRQCGFQTLLVLSGGCSKEELLAETDPQRIPDYYADSVADVAQML GEAPKSRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15739-PB | 308 | CG15739-PB | 1..308 | 1..308 | 1567 | 100 | Plus |
CG15739-PA | 308 | CG15739-PA | 1..308 | 1..308 | 1567 | 100 | Plus |
CG10352-PB | 315 | CG10352-PB | 1..299 | 1..297 | 641 | 44 | Plus |
CG2680-PB | 305 | CG2680-PB | 1..305 | 1..305 | 491 | 37.7 | Plus |
CG5567-PA | 330 | CG5567-PA | 23..318 | 6..296 | 378 | 30.9 | Plus |
Translation from 58 to 984
> RE04130.pep MAKPQHILQLSQEQRSSVVDSFDRVVSDIDGVLWTFEQSIPRAADGYAAL EQMGKHLTFLTNNSVRTSEQCVKLFAKIGMQVHPEQIWHPAKSIVSYLQS IKFEGLIYIIASQSFKTVLREAGFQLLDGPNEFIEESYASLAEHIFGKEP VRAVIIDVDFNLTSPKILRAHLYLRHPECMLIEGATDRLLPVAKEVNIVG PGAFASILVEASGKQPITLGKPGRELGDLLVEHYQIVQPSRVLMIGDMLA QDVSFGRQCGFQTLLVLSGGCSKEELLAETDPQRIPDYYADSVADVAQML GEAPKSRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21574-PA | 310 | GF21574-PA | 4..308 | 2..306 | 1134 | 67.2 | Plus |
Dana\GF21591-PA | 273 | GF21591-PA | 4..273 | 31..299 | 623 | 45.8 | Plus |
Dana\GF22487-PA | 305 | GF22487-PA | 1..300 | 1..300 | 523 | 38 | Plus |
Dana\GF25232-PA | 316 | GF25232-PA | 8..303 | 6..296 | 393 | 29.9 | Plus |
Dana\GF10230-PA | 309 | GF10230-PA | 15..300 | 6..296 | 305 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18450-PA | 308 | GG18450-PA | 1..308 | 1..308 | 1462 | 88.3 | Plus |
Dere\GG18824-PA | 305 | GG18824-PA | 22..296 | 31..306 | 595 | 44.1 | Plus |
Dere\GG18612-PA | 305 | GG18612-PA | 1..300 | 1..300 | 513 | 38.4 | Plus |
Dere\GG15774-PA | 315 | GG15774-PA | 8..303 | 6..296 | 398 | 31.5 | Plus |
Dere\GG14489-PA | 320 | GG14489-PA | 15..315 | 6..300 | 323 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12276-PA | 311 | GH12276-PA | 5..304 | 3..302 | 1028 | 60.7 | Plus |
Dgri\GH12470-PA | 265 | GH12470-PA | 5..264 | 40..298 | 581 | 46 | Plus |
Dgri\GH11944-PA | 305 | GH11944-PA | 3..301 | 4..300 | 526 | 39.6 | Plus |
Dgri\GH14463-PA | 316 | GH14463-PA | 8..310 | 6..303 | 384 | 29.8 | Plus |
Dgri\GH23184-PA | 319 | GH23184-PA | 14..314 | 6..300 | 312 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15739-PB | 308 | CG15739-PB | 1..308 | 1..308 | 1567 | 100 | Plus |
CG15739-PA | 308 | CG15739-PA | 1..308 | 1..308 | 1567 | 100 | Plus |
CG10352-PB | 315 | CG10352-PB | 1..299 | 1..297 | 641 | 44 | Plus |
CG2680-PB | 305 | CG2680-PB | 1..305 | 1..305 | 491 | 37.7 | Plus |
CG5567-PA | 330 | CG5567-PA | 23..318 | 6..296 | 378 | 30.9 | Plus |
CG32487-PA | 320 | CG32487-PA | 16..315 | 7..300 | 313 | 28.4 | Plus |
CG32488-PB | 307 | CG32488-PB | 9..306 | 7..300 | 294 | 24.7 | Plus |
CG32488-PA | 307 | CG32488-PA | 9..306 | 7..300 | 294 | 24.7 | Plus |
CG11291-PA | 308 | CG11291-PA | 8..306 | 6..300 | 273 | 25.7 | Plus |
CG5577-PB | 315 | CG5577-PB | 12..315 | 10..300 | 222 | 27.2 | Plus |
CG5577-PA | 315 | CG5577-PA | 12..315 | 10..300 | 222 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10972-PA | 323 | GI10972-PA | 15..321 | 1..306 | 1119 | 67.4 | Plus |
Dmoj\GI11147-PA | 305 | GI11147-PA | 31..300 | 29..296 | 587 | 44.1 | Plus |
Dmoj\GI11145-PA | 1237 | GI11145-PA | 967..1234 | 32..298 | 572 | 43.1 | Plus |
Dmoj\GI14731-PA | 303 | GI14731-PA | 3..299 | 4..300 | 516 | 40.1 | Plus |
Dmoj\GI13608-PA | 316 | GI13608-PA | 8..303 | 6..296 | 393 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20155-PA | 312 | GL20155-PA | 5..312 | 2..308 | 1256 | 74.7 | Plus |
Dper\GL20404-PA | 302 | GL20404-PA | 1..298 | 1..296 | 646 | 42.7 | Plus |
Dper\GL19811-PA | 305 | GL19811-PA | 1..300 | 1..300 | 543 | 39 | Plus |
Dper\GL18197-PA | 321 | GL18197-PA | 28..312 | 18..296 | 357 | 30.6 | Plus |
Dper\GL22743-PA | 314 | GL22743-PA | 10..305 | 6..296 | 331 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13927-PA | 312 | GA13927-PA | 5..312 | 2..308 | 1257 | 75 | Plus |
Dpse\GA29193-PA | 357 | GA29193-PA | 40..353 | 5..296 | 604 | 39.9 | Plus |
Dpse\GA15426-PA | 305 | GA15426-PA | 1..300 | 1..300 | 540 | 39 | Plus |
Dpse\GA16941-PA | 321 | GA16941-PA | 28..312 | 18..296 | 355 | 30.6 | Plus |
Dpse\GA18976-PA | 314 | GA18976-PA | 10..305 | 6..296 | 331 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13116-PA | 308 | GM13116-PA | 1..308 | 1..308 | 1527 | 92.2 | Plus |
Dsec\GM13036-PA | 286 | GM13036-PA | 5..271 | 32..297 | 606 | 45.5 | Plus |
Dsec\GM13035-PA | 300 | GM13035-PA | 19..285 | 32..297 | 605 | 45.5 | Plus |
Dsec\GM18860-PA | 305 | GM18860-PA | 1..300 | 1..300 | 497 | 37.4 | Plus |
Dsec\GM24299-PA | 315 | GM24299-PA | 8..303 | 6..296 | 391 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17054-PA | 300 | GD17054-PA | 2..300 | 10..308 | 1479 | 91.6 | Plus |
Dsim\GD15960-PA | 305 | GD15960-PA | 1..290 | 10..297 | 658 | 45.4 | Plus |
Dsim\GD16358-PA | 305 | GD16358-PA | 1..300 | 1..300 | 504 | 38 | Plus |
Dsim\GD12368-PA | 315 | GD12368-PA | 8..303 | 6..296 | 392 | 31.2 | Plus |
Dsim\GD13364-PA | 320 | GD13364-PA | 15..315 | 6..300 | 322 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18530-PA | 311 | GJ18530-PA | 6..311 | 4..308 | 1179 | 69.6 | Plus |
Dvir\GJ18523-PA | 278 | GJ18523-PA | 8..276 | 31..297 | 593 | 44.6 | Plus |
Dvir\GJ18537-PA | 304 | GJ18537-PA | 3..299 | 4..300 | 537 | 39.5 | Plus |
Dvir\GJ13944-PA | 316 | GJ13944-PA | 8..303 | 6..296 | 408 | 31.5 | Plus |
Dvir\GJ11756-PA | 321 | GJ11756-PA | 12..316 | 5..300 | 362 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25499-PA | 314 | GK25499-PA | 8..314 | 3..308 | 1189 | 69.4 | Plus |
Dwil\GK25422-PA | 335 | GK25422-PA | 29..330 | 3..296 | 622 | 43.9 | Plus |
Dwil\GK20059-PA | 305 | GK20059-PA | 1..301 | 1..300 | 511 | 36.7 | Plus |
Dwil\GK21181-PA | 318 | GK21181-PA | 10..312 | 6..303 | 400 | 31.5 | Plus |
Dwil\GK17623-PA | 311 | GK17623-PA | 8..310 | 6..300 | 333 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15672-PA | 308 | GE15672-PA | 1..308 | 1..308 | 1447 | 87 | Plus |
Dyak\GE17588-PA | 305 | GE17588-PA | 1..290 | 10..297 | 648 | 44.7 | Plus |
Dyak\GE16927-PA | 305 | GE16927-PA | 1..305 | 1..305 | 503 | 37.4 | Plus |
Dyak\GE22109-PA | 315 | GE22109-PA | 8..303 | 6..296 | 395 | 31.2 | Plus |
Dyak\GE21678-PA | 320 | GE21678-PA | 15..315 | 6..300 | 331 | 28.5 | Plus |