BDGP Sequence Production Resources |
Search the DGRC for RE04143
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 41 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CHORD-RA |
Protein status: | RE04143.pep: gold |
Preliminary Size: | 1225 |
Sequenced Size: | 1253 |
Gene | Date | Evidence |
---|---|---|
CG6198 | 2001-12-14 | Blastp of sequenced clone |
CG6198 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6198 | 2003-01-01 | Sim4 clustering to Release 3 |
CHORD | 2008-04-29 | Release 5.5 accounting |
CHORD | 2008-08-15 | Release 5.9 accounting |
CHORD | 2008-12-18 | 5.12 accounting |
1253 bp (1253 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070947
> RE04143.complete AAAAACGTATGGAACACATCTGCTTATAGAGGAATATTCTCGATTTTAAG CGAAATTTGTACACATTTAGTTAAACCAAAACATACATAATTAGTTCAAC CGAAACTTAATAATCATGGAACAATGCTATAACAGAGGCTGTGGCCAACT CTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGTG AACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAAG TCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAAA GCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAGT CCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCTG CCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGGC TCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAAA AGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTGC ACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACCA TCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGCC AGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTACC TACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGCA ATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATTT ATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCATC AGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTGA CCTGGACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCGC ATATGTATGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGGC TCTTGGTCCAACCTAAATTTTCCCAACAAGAAACTGCCAGTGGTTAAGAA AAGCCAGGTGGAAGAGAAGAAAAAGCAGGAGGAGAGCGATGAGGAGTTCT TCGACCTGGATGACATTAAAGCGGAGACCAGTTTCCGTCTTTCCGAAATG AGCATGCAAAGCCCAAACAACTTAGATTAATAAAGAAGTTGGCATTTAAT GTTATATAAAATACACGAATTTGCCTTTGAGTAGTCGAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20009924..20010475 | 176..727 | 2700 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 20010798..20011110 | 923..1235 | 1565 | 100 | Plus |
chr3R | 27901430 | chr3R | 20010543..20010739 | 726..922 | 985 | 100 | Plus |
chr3R | 27901430 | chr3R | 20009681..20009856 | 1..176 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24186599..24187150 | 176..727 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187473..24187785 | 923..1235 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 726..922 | 985 | 100 | Plus |
3R | 32079331 | 3R | 24186365..24186540 | 1..176 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23927430..23927981 | 176..727 | 2760 | 100 | Plus |
3R | 31820162 | 3R | 23928304..23928616 | 923..1235 | 1565 | 100 | Plus |
3R | 31820162 | 3R | 23928049..23928245 | 726..922 | 985 | 100 | Plus |
3R | 31820162 | 3R | 23927196..23927371 | 1..176 | 880 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20009681..20009856 | 1..176 | 100 | -> | Plus |
chr3R | 20009925..20010475 | 177..727 | 99 | -> | Plus |
chr3R | 20010545..20010739 | 728..922 | 100 | -> | Plus |
chr3R | 20010798..20011110 | 923..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1065 | 116..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1065 | 116..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1065 | 116..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1065 | 116..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1065 | 116..1180 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1235 | 1..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1235 | 1..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 7..1241 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 1..1235 | 1..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHORD-RA | 7..1241 | 1..1235 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24186365..24186540 | 1..176 | 100 | -> | Plus |
3R | 24186600..24187150 | 177..727 | 100 | -> | Plus |
3R | 24187220..24187414 | 728..922 | 100 | -> | Plus |
3R | 24187473..24187785 | 923..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24186365..24186540 | 1..176 | 100 | -> | Plus |
3R | 24186600..24187150 | 177..727 | 100 | -> | Plus |
3R | 24187220..24187414 | 728..922 | 100 | -> | Plus |
3R | 24187473..24187785 | 923..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24186365..24186540 | 1..176 | 100 | -> | Plus |
3R | 24186600..24187150 | 177..727 | 100 | -> | Plus |
3R | 24187220..24187414 | 728..922 | 100 | -> | Plus |
3R | 24187473..24187785 | 923..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20012087..20012262 | 1..176 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 177..727 | 100 | -> | Plus |
arm_3R | 20012942..20013136 | 728..922 | 100 | -> | Plus |
arm_3R | 20013195..20013507 | 923..1237 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23927431..23927981 | 177..727 | 100 | -> | Plus |
3R | 23928051..23928245 | 728..922 | 100 | -> | Plus |
3R | 23928304..23928616 | 923..1237 | 99 | Plus | |
3R | 23927196..23927371 | 1..176 | 100 | -> | Plus |
Translation from 115 to 1179
> RE04143.hyp MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP NNLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CHORD-PA | 354 | CG6198-PA | 1..354 | 1..354 | 1928 | 100 | Plus |
Translation from 115 to 1179
> RE04143.pep MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP NNLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16113-PA | 360 | GF16113-PA | 1..360 | 1..354 | 1605 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11265-PA | 353 | GG11265-PA | 1..353 | 1..352 | 1771 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18665-PA | 364 | GH18665-PA | 1..364 | 1..354 | 1402 | 70.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CHORD-PA | 354 | CG6198-PA | 1..354 | 1..354 | 1928 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24177-PA | 364 | GI24177-PA | 1..364 | 1..354 | 1427 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23415-PA | 366 | GL23415-PA | 1..366 | 1..354 | 1412 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19433-PA | 365 | GA19433-PA | 1..365 | 1..354 | 1411 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26571-PA | 364 | GM26571-PA | 1..353 | 1..353 | 1816 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21075-PA | 354 | GD21075-PA | 1..354 | 1..354 | 1866 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14211-PA | 367 | GJ14211-PA | 1..367 | 1..354 | 1466 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11385-PA | 366 | GK11385-PA | 1..366 | 1..354 | 1435 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23458-PA | 353 | GE23458-PA | 1..353 | 1..352 | 1795 | 92.6 | Plus |