BDGP Sequence Production Resources |
Search the DGRC for RE04259
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 42 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | in-RA |
Protein status: | RE04259.pep: gold |
Preliminary Size: | 3103 |
Sequenced Size: | 3076 |
Gene | Date | Evidence |
---|---|---|
CG16993 | 2002-01-01 | Sim4 clustering to Release 2 |
CG16993 | 2002-02-26 | Blastp of sequenced clone |
CG16993 | 2003-01-01 | Sim4 clustering to Release 3 |
in | 2008-04-29 | Release 5.5 accounting |
in | 2008-08-15 | Release 5.9 accounting |
in | 2008-12-18 | 5.12 accounting |
3076 bp (3076 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089567
> RE04259.complete AGTCGACATTCAGAGCTGAGCTGAGGCGGTATCAACCGGCGGCAGATAGT TGAGTGTGTACCTGGAATAGTAGGCCACTAATAACTATCCGCCCAGTTAA CTATCCCCGGTAAACTATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG GTATTCCCGGTAGTTCCGTGGACATAAGAATGCCCTTTGCTATGCTGCTA CTCCCACCGGAGTGCTATCAGCATGAACAGCAACAGGATTCCCTCTACTA CTTTCCGGAAATCCCCGACAACTTCCTATTCAAGGCCCGTGGGAGTTTCC TCACCCTGCACGCCGTACTCAGTGAACTGCACACCCAGCCGCTGAGTTCA AGGCTGCTGGTGGATCAGGTGCAATACCACGTCAACTACCGCCAACTGAA TGGGTTCCTAGTCCTCTTCGCCTACGCCGGAGGACTCTGCTGTGCGGCGG AGTGCAGCCTGCGATCGGATGAGCTAATCGGATACATACGCTTCTCTCTG CCGGGCTTGGTCCTGGAGAGCTTTAATCAGGAGAGAGAGCCGGGGAATAG TTCGAGACTGAAGCTGTTCCTTCGACACTTTTGCGAAATCCAGAGAACCC GGCTCGTAGCCAGATGCCATGGTCATATTCGTTTCGAGGAGCTCCTGGGC CAATCCCGCAGCCTGCCACTGCCAAAGGAAGCGCAGCTGCGCATCTTTGA TGCTCTGAGTGAAATGGAGGCCATGGACTATCGCAACTGGAACGACGAGC CACTCACCACCCATCGCGAGTTCTTCATCTACGGCAGTGCGCTGTACTAC GATGGCTTCCTGGTGGCCAGCCTGCTGCCACCGGAAGTGAGGGTGAGTGT AGAAGGATTCCTGCGCTGCCGCGGAATCTTCGAGTTGCTCGGAGCTGCTC CGGGAATCAAAGTTCGCGAGATGTACGTGTGGGAGGAGATAGTGTTGCCC AGTGCCACAGGGCGATATTTCCTTACCATCTGCACCAAGAACCACTTGAG TCTGGCCGTGATCTTGAAGATCTTCGATGCTCCAGACATGGCGCCGGATG CGGTGGTGGGTCCATCGCTCTTTTACATCGAGGAGATTCAAGAGACGCTG GACCACCTAGTACAGTGCGGCATTGAATCCCTGGCCATGTTCTGGTCCGT TTCCAATAAGAGACCCGAGGTGCTGGACGCCACTGCCAGCGAGAGTAGAG ATCAGGAGAAGGAGCCGAACAACCGACTGGAGTCCTTCCTCAAGCAGAAG CTAACCGTGCTGAGTCCTTCGGTGGAGGAGGAAGCCCAACTGTGCTCGTC CCTGGGTGGGTCTTCCATACATAGTCTGACTCCCAGTGAGGACGAGTCCT GTCGCAGGCGATTGACCCCCATCCATGGTACTGCCGAGGACTCAGACAGC GGTTCCGACTGGGAGAACTTCGCCGTACAGCATCCACTTCACTATGGACT GAATCTCGGGGCCGAGAGCCACAGTCAGAGCCAAATGACAGAGTCCATGT GGAAGGAGATCAACAACGTGGTGCCGGTCAAGATATCCGCTGGCTGGAAG AATTCCGTTCTGCACTACGTCTACATTGACATAGCCAATGGGTCCTTGTT TGCGCCATTTACCGACAGCTCCGAGAACTCCAACTACCTCTCCGAGATTC GTCAGGCGTGTCACATAATCCACGCCGTGCTGCAGAAATCCAAGCACTAT CGCAGGCATCTATCGGAATCCTCGAGAGCACAGACGAACTCGAACGGGCA CAGTAGCCACACAGTGTCGCTGGTCAAGGAGCACGGCATGATCCTGGAGG TCAGCACGCAACCCAAGTCGGACGGGCAATCCCAATCCTCGACGAGCAGT CGCTTCGTGGTGGTTGGTCGTCTCTTTCAGTCGCCAGCCAAGGAAGTGTA CGTGTGTCACCGGTCCGATGTTCCCCAGAACATAGTCGAAATGGCCTTCC GGTTGTCCTTCTTCTCAATGGGATGACATCTTGGAAGGATACTACCAACT TAGATACTGGCTATGCGTAGAATTCTTGCTATAATATAAACACAAATATT TAAAATGTGGTTTTAACTAAACAAATTACTTTTATATAGGCATTCAAACA ATTTTTTAAAATTATATTTAAGAATGCATAATTAATCATTTTCAGCAATT CTATTACGAAAGCATTTGATTTAGGGGAAGTGCAATTTTGTATTTTCAAA ATTCGAAAAGCGCAAGCTTGCCAAAACTCTAAGAAATTGAAAAATATGTA CATTTCCTCTGAAACGCAGCGAATAAATATGTATGTATGAAGGTATTTCA AGAGGAACACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
in-RA | 3060 | in-RA | 1..3060 | 1..3060 | 15300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20356259..20359318 | 1..3060 | 15195 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20367200..20370262 | 1..3063 | 15315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20360300..20363362 | 1..3063 | 15315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3941..4058 | 2780..2891 | 153 | 61.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20356259..20359318 | 1..3060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..2610 | 117..2726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..2610 | 117..2726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..2610 | 117..2726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..2610 | 117..2726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..2610 | 117..2726 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..3060 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..3060 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 3..3062 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 1..3060 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
in-RA | 3..3062 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20367200..20370259 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20367200..20370259 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20367200..20370259 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20360300..20363359 | 1..3060 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20360300..20363359 | 1..3060 | 100 | Plus |
Translation from 116 to 2725
> RE04259.pep MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS DVPQNIVEMAFRLSFFSMG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10333-PA | 860 | GF10333-PA | 1..860 | 1..869 | 3610 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16106-PA | 870 | GG16106-PA | 1..870 | 1..869 | 4254 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16970-PA | 889 | GH16970-PA | 41..889 | 31..869 | 2755 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
in-PA | 869 | CG16993-PA | 1..869 | 1..869 | 4528 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11834-PA | 870 | GI11834-PA | 36..870 | 26..869 | 2766 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25138-PA | 528 | GL25138-PA | 3..528 | 347..869 | 2212 | 78 | Plus |
Dper\GL25137-PA | 375 | GL25137-PA | 1..370 | 1..334 | 1007 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14263-PA | 839 | GA14263-PA | 1..839 | 1..803 | 3024 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22282-PA | 869 | GM22282-PA | 1..869 | 1..869 | 4539 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14880-PA | 869 | GD14880-PA | 1..869 | 1..869 | 4562 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13534-PA | 871 | GJ13534-PA | 39..871 | 29..869 | 2843 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16956-PA | 899 | GK16956-PA | 16..899 | 10..869 | 2795 | 65 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19671-PA | 867 | GE19671-PA | 1..867 | 1..869 | 4335 | 94.6 | Plus |
Translation from 116 to 2725
> RE04259.hyp MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS DVPQNIVEMAFRLSFFSMG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
in-PA | 869 | CG16993-PA | 1..869 | 1..869 | 4528 | 100 | Plus |