Clone RE04259 Report

Search the DGRC for RE04259

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:42
Well:59
Vector:pFlc-1
Associated Gene/Transcriptin-RA
Protein status:RE04259.pep: gold
Preliminary Size:3103
Sequenced Size:3076

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16993 2002-01-01 Sim4 clustering to Release 2
CG16993 2002-02-26 Blastp of sequenced clone
CG16993 2003-01-01 Sim4 clustering to Release 3
in 2008-04-29 Release 5.5 accounting
in 2008-08-15 Release 5.9 accounting
in 2008-12-18 5.12 accounting

Clone Sequence Records

RE04259.complete Sequence

3076 bp (3076 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089567

> RE04259.complete
AGTCGACATTCAGAGCTGAGCTGAGGCGGTATCAACCGGCGGCAGATAGT
TGAGTGTGTACCTGGAATAGTAGGCCACTAATAACTATCCGCCCAGTTAA
CTATCCCCGGTAAACTATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG
CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC
GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA
CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG
TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC
CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA
CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT
CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC
ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC
CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA
TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG
CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA
TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG
GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG
TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC
CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG
GTATTCCCGGTAGTTCCGTGGACATAAGAATGCCCTTTGCTATGCTGCTA
CTCCCACCGGAGTGCTATCAGCATGAACAGCAACAGGATTCCCTCTACTA
CTTTCCGGAAATCCCCGACAACTTCCTATTCAAGGCCCGTGGGAGTTTCC
TCACCCTGCACGCCGTACTCAGTGAACTGCACACCCAGCCGCTGAGTTCA
AGGCTGCTGGTGGATCAGGTGCAATACCACGTCAACTACCGCCAACTGAA
TGGGTTCCTAGTCCTCTTCGCCTACGCCGGAGGACTCTGCTGTGCGGCGG
AGTGCAGCCTGCGATCGGATGAGCTAATCGGATACATACGCTTCTCTCTG
CCGGGCTTGGTCCTGGAGAGCTTTAATCAGGAGAGAGAGCCGGGGAATAG
TTCGAGACTGAAGCTGTTCCTTCGACACTTTTGCGAAATCCAGAGAACCC
GGCTCGTAGCCAGATGCCATGGTCATATTCGTTTCGAGGAGCTCCTGGGC
CAATCCCGCAGCCTGCCACTGCCAAAGGAAGCGCAGCTGCGCATCTTTGA
TGCTCTGAGTGAAATGGAGGCCATGGACTATCGCAACTGGAACGACGAGC
CACTCACCACCCATCGCGAGTTCTTCATCTACGGCAGTGCGCTGTACTAC
GATGGCTTCCTGGTGGCCAGCCTGCTGCCACCGGAAGTGAGGGTGAGTGT
AGAAGGATTCCTGCGCTGCCGCGGAATCTTCGAGTTGCTCGGAGCTGCTC
CGGGAATCAAAGTTCGCGAGATGTACGTGTGGGAGGAGATAGTGTTGCCC
AGTGCCACAGGGCGATATTTCCTTACCATCTGCACCAAGAACCACTTGAG
TCTGGCCGTGATCTTGAAGATCTTCGATGCTCCAGACATGGCGCCGGATG
CGGTGGTGGGTCCATCGCTCTTTTACATCGAGGAGATTCAAGAGACGCTG
GACCACCTAGTACAGTGCGGCATTGAATCCCTGGCCATGTTCTGGTCCGT
TTCCAATAAGAGACCCGAGGTGCTGGACGCCACTGCCAGCGAGAGTAGAG
ATCAGGAGAAGGAGCCGAACAACCGACTGGAGTCCTTCCTCAAGCAGAAG
CTAACCGTGCTGAGTCCTTCGGTGGAGGAGGAAGCCCAACTGTGCTCGTC
CCTGGGTGGGTCTTCCATACATAGTCTGACTCCCAGTGAGGACGAGTCCT
GTCGCAGGCGATTGACCCCCATCCATGGTACTGCCGAGGACTCAGACAGC
GGTTCCGACTGGGAGAACTTCGCCGTACAGCATCCACTTCACTATGGACT
GAATCTCGGGGCCGAGAGCCACAGTCAGAGCCAAATGACAGAGTCCATGT
GGAAGGAGATCAACAACGTGGTGCCGGTCAAGATATCCGCTGGCTGGAAG
AATTCCGTTCTGCACTACGTCTACATTGACATAGCCAATGGGTCCTTGTT
TGCGCCATTTACCGACAGCTCCGAGAACTCCAACTACCTCTCCGAGATTC
GTCAGGCGTGTCACATAATCCACGCCGTGCTGCAGAAATCCAAGCACTAT
CGCAGGCATCTATCGGAATCCTCGAGAGCACAGACGAACTCGAACGGGCA
CAGTAGCCACACAGTGTCGCTGGTCAAGGAGCACGGCATGATCCTGGAGG
TCAGCACGCAACCCAAGTCGGACGGGCAATCCCAATCCTCGACGAGCAGT
CGCTTCGTGGTGGTTGGTCGTCTCTTTCAGTCGCCAGCCAAGGAAGTGTA
CGTGTGTCACCGGTCCGATGTTCCCCAGAACATAGTCGAAATGGCCTTCC
GGTTGTCCTTCTTCTCAATGGGATGACATCTTGGAAGGATACTACCAACT
TAGATACTGGCTATGCGTAGAATTCTTGCTATAATATAAACACAAATATT
TAAAATGTGGTTTTAACTAAACAAATTACTTTTATATAGGCATTCAAACA
ATTTTTTAAAATTATATTTAAGAATGCATAATTAATCATTTTCAGCAATT
CTATTACGAAAGCATTTGATTTAGGGGAAGTGCAATTTTGTATTTTCAAA
ATTCGAAAAGCGCAAGCTTGCCAAAACTCTAAGAAATTGAAAAATATGTA
CATTTCCTCTGAAACGCAGCGAATAAATATGTATGTATGAAGGTATTTCA
AGAGGAACACAAAAAAAAAAAAAAAA

RE04259.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
in-RA 3060 in-RA 1..3060 1..3060 15300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20356259..20359318 1..3060 15195 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20367200..20370262 1..3063 15315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20360300..20363362 1..3063 15315 100 Plus
Blast to na_te.dros performed 2019-03-16 05:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3941..4058 2780..2891 153 61.9 Plus

RE04259.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:41:06 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20356259..20359318 1..3060 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:23 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..2610 117..2726 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:35:50 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..2610 117..2726 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:47 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..2610 117..2726 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:23 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..2610 117..2726 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:09:22 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..2610 117..2726 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:22 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..3060 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:35:50 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..3060 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:47 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 3..3062 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:24 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 1..3060 1..3060 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:09:22 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
in-RA 3..3062 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:06 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20367200..20370259 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:06 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20367200..20370259 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:06 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20367200..20370259 1..3060 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:47 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20360300..20363359 1..3060 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:20 Download gff for RE04259.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20360300..20363359 1..3060 100   Plus

RE04259.pep Sequence

Translation from 116 to 2725

> RE04259.pep
MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR
CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL
DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR
VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL
KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK
FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP
DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL
FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL
FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM
EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR
CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL
KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP
EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS
IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE
SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD
SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV
SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS
DVPQNIVEMAFRLSFFSMG*

RE04259.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10333-PA 860 GF10333-PA 1..860 1..869 3610 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16106-PA 870 GG16106-PA 1..870 1..869 4254 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16970-PA 889 GH16970-PA 41..889 31..869 2755 63.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
in-PA 869 CG16993-PA 1..869 1..869 4528 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11834-PA 870 GI11834-PA 36..870 26..869 2766 64.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25138-PA 528 GL25138-PA 3..528 347..869 2212 78 Plus
Dper\GL25137-PA 375 GL25137-PA 1..370 1..334 1007 63.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14263-PA 839 GA14263-PA 1..839 1..803 3024 72.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22282-PA 869 GM22282-PA 1..869 1..869 4539 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14880-PA 869 GD14880-PA 1..869 1..869 4562 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13534-PA 871 GJ13534-PA 39..871 29..869 2843 65.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16956-PA 899 GK16956-PA 16..899 10..869 2795 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19671-PA 867 GE19671-PA 1..867 1..869 4335 94.6 Plus

RE04259.hyp Sequence

Translation from 116 to 2725

> RE04259.hyp
MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR
CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL
DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR
VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL
KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK
FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP
DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL
FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL
FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM
EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR
CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL
KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP
EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS
IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE
SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD
SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV
SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS
DVPQNIVEMAFRLSFFSMG*

RE04259.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
in-PA 869 CG16993-PA 1..869 1..869 4528 100 Plus