BDGP Sequence Production Resources |
Search the DGRC for RE04270
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 42 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fwe-RB |
Protein status: | RE04270.pep: gold |
Sequenced Size: | 3025 |
Gene | Date | Evidence |
---|---|---|
CG6151 | 2010-07-15 | Manual selection by Sue Celniker |
3025 bp assembled on 2011-02-17
GenBank Submission: BT126043.1
> RE04270.complete GGTTCGCGTGCAGCAGAACGCAAAGTACAACAGGATTTTTTTCGTTCCGT GTGACGTGAAAAGTGCAAATAGTAATTGTTCGAATTAGTTTAAGCCTAGC TAACTAACTAAATAAATAGCCATGTCGTTTGCGGAAAAGATAACGGGTCT GCTGGCACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGT ATCTCAAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCC ATTCTTTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATC CTGCCTGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGC TCTTGGAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATC GCGGAAAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACAT TGCCATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTAT TCGGCAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCG TTAGGCAAGAAAGCTTCTCGAGAGGACATGGCCGCCGCTGCCACATCGCC CACACAGATGGCCGGCAGTCAGGCGGGCGGTCAGATGCAGATGGGCGGCG ATCAGCATATCACACTCATGGAAGACCCCGATGTCTGGCGCCCCACATAA ATTCCTAGCCGCGCCATTAGTAACTGCCAAAAAACCACACTCAGATACAG ATAAAGACACAGATACTCAGATACACAGATTCACACACAAAATACTCCAC TAGAAATGCGAACGATGCAAGAATTGATCGAGTAACAAATATTTTACGGC GCCTAGTTTTTAGTGTTCGTTCCGAGGATAAATGCAACTAAGTGAAAAGG AAAATCACTACAAAGCAGCATTGTAGGGCATCAGAGAACTAGTATACAGA ACACCCCACCAAATACAAAAGAAAATTTAACGAAATTCTCATTACTGTTG AAACCGAGAGTGTTAGTAATCAAAGTATATTTTGGGCAAATGCATTTCCG TCATTCGACCCCCCGTTTTGCATGGCATTCGTACTATATTCGTATTCAAA TTTTTTAATATCTTTCGTCGAGCGTTGGTGTTGTTAAGAACTACAGTTAA ATATATATAATATGCATAGAACAACTACTGATAACAATAACGTAACTCAC ATGTCAAACTCTGCAGCAAGCATATATTTTTAGTGAGAAACTATATTTGA AAGCTAACCGAATGCAAGAGGAACCGGAACCTATAAGTTAACCACAGCTT CCACACACTCACACACAGCTAATGCTAATGGAAAGCCACTGATGATATGG ACAAGTGAATGTCGAGAACCTAGAGCAATATGTACAACTCAGAAATAATT AACTTTATATGCTTTGCTTCGATGTAAACCATAAAATTAAATGTTAAACG TTATTTGAGAATCGATTTGCTCGCGGGATAGTCACAATTTGAAATTGAAC ATAATCAAGCATACAGATAGAATATATATATATATATATATATACAACAA GTTGAGAATTTACCAGTTATATTTTTTAAATGTTGTAACCGAAAAGTGTC CATTTCAATTTGATGCATTGTTAGACGGTTTTCTTTTTAGACAATTACTT GGTTAATAGGATTTCGTTTTCGGGTTTCGTATGATTTCTTGTTTGCTAGA AGTATATGCTTATTTTTTTTAGTATACCTAAGTTATTTATAAGAGTTTAT TCCAATCGTTTAACTTTGAAAGTCTGAGAAAAACGTTTTAAATTATTTTT GTTGTTGCCTATTGGCATTCTTACCACAGAAGCATTCCAAAATCTGTTTA CTTTACGCATAAGTTATTGTATAGTTTAATTATTATAACTTTAAATATAC ATTATTTACAAGAAACTCGCGATAATTTATTACAATTTAGCCTTCGCCAG CAACTAAGAGTCTCACCTAAAGTAATCACGAATCATAATTAATTTGTTGA ACTTTGTTAATCAATGAACGCAACACTAAAAATGAAAACATAAACATGTA AAATATTTCGTTAGAATTTGAACGCGCATGATTCAAATATCAAACACTTT GTACATGCCACCTGAAAACTGTCCAAAATCCTGCCGTTAAAGCCAAGTAC ATTCAACGACGGCCAACAGCGATTAACAACAATATACGATTTACGTTAAC GAGTTCTGAACTTTGCTGCGTCCAAGAGATCACTACAGAGCATCCGCCGA GGACATGCGGGCAGCTGCTCAGCAAACCTTCGGAGGAAACACACCTGCCC AAACCAACGATCGAGCGGGGATTGTGAACAACGCCCAGCCCTTCTCCTTC ACCGGTGCCGTGGGCACGGACAGCAATGTGTGATTCAGAAGCTAGCTGAT CGGGATTTCGAGGAATCGAAGAGCTGGGTGTGCCGTGAGAAAACAAGACT CAAAACGCAACATTTGAAGGGCAAACCTAACCAAGAGAACATCGGCAGGC AATCATAAACATAATCATGTGCAATTTCTGATTGTTCAATAACCAACGCA AATGGATAACAAAAGTTTTTAAATCCGATTAGCTCTGATCTCTTTCTAGA GCAATCCAAATTACTCGATCAGAAAGAAGCCACCCAAAACAAGATCATTA AATTTTAAACCATTTTTGTATTAAATGTATGTAAATGTATATTGGTTTTA AAAGCGTTTTGCGTTTTCTGTATCCTATTAATTAATTGTGTTGCCTGTGT CCCATCATTCCAAAACATTTGGTTTCAACTAAGTAGAAATTGCAAATAAA TTATTGAACGACATCACTAGCGAGGTGAAAAAAAAAGATCATGTAAAATT TATGTTTAGTCATAGTTTAAATATACCTTAAATATATTTAAATGCATAAT ACTAAAATGTTTAAATTAATGCAAATAACACTATAAATATTGTATGTAAA CCATATTAAAATTGAATTAAAGATACTTTAAATTATGTTAAATAAAATTA ATTATACAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15801044..15802721 | 2238..562 | 8340 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 15799904..15800676 | 3008..2235 | 3805 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 15803243..15803450 | 453..246 | 1040 | 100 | Minus |
chr3L | 24539361 | chr3L | 15806098..15806221 | 124..1 | 620 | 100 | Minus |
chr3L | 24539361 | chr3L | 15805760..15805881 | 245..124 | 610 | 100 | Minus |
chr3L | 24539361 | chr3L | 15803070..15803177 | 561..454 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15811220..15812897 | 2238..562 | 8340 | 99.9 | Minus |
3L | 28110227 | 3L | 15810080..15810852 | 3008..2235 | 3820 | 99.9 | Minus |
3L | 28110227 | 3L | 15813419..15813626 | 453..246 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 15816274..15816397 | 124..1 | 620 | 100 | Minus |
3L | 28110227 | 3L | 15815936..15816057 | 245..124 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15813246..15813353 | 561..454 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15804320..15805997 | 2238..562 | 8350 | 99.9 | Minus |
3L | 28103327 | 3L | 15803180..15803952 | 3008..2235 | 3830 | 99.8 | Minus |
3L | 28103327 | 3L | 15806519..15806726 | 453..246 | 1040 | 100 | Minus |
3L | 28103327 | 3L | 15809374..15809497 | 124..1 | 620 | 100 | Minus |
3L | 28103327 | 3L | 15809036..15809157 | 245..124 | 610 | 100 | Minus |
3L | 28103327 | 3L | 15806346..15806453 | 561..454 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 27..95 | 2933..3001 | 155 | 72.9 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5010..5151 | 1812..1673 | 140 | 57.9 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6186..6527 | 2675..2997 | 135 | 53.2 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 555..717 | 2741..2577 | 127 | 57.4 | Minus |
G3 | 4605 | G3 G3 4605bp | 2759..2824 | 959..1024 | 122 | 68.7 | Plus |
baggins | 5453 | baggins BAGGINS 5453bp | 2324..2367 | 1371..1328 | 120 | 80 | Minus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 531..672 | 2788..2652 | 120 | 58.7 | Minus |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1933..2033 | 1484..1584 | 116 | 63.5 | Plus |
invader4 | 3105 | invader4 INVADER4 3105bp | 1993..2095 | 1437..1538 | 116 | 59.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15806098..15806221 | 1..124 | 100 | Minus | |
chr3L | 15803243..15803450 | 246..453 | 100 | <- | Minus |
chr3L | 15805760..15805880 | 125..245 | 100 | <- | Minus |
chr3L | 15799960..15800672 | 2239..2952 | 99 | <- | Minus |
chr3L | 15801044..15802721 | 562..2238 | 98 | <- | Minus |
chr3L | 15803070..15803177 | 454..561 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RB | 1..579 | 122..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RB | 1..579 | 122..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RB | 1..579 | 122..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
flower-RB | 19..2988 | 1..2970 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RB | 14..2983 | 1..2970 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fwe-RB | 14..3020 | 1..3007 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810079..15810848 | 2239..3009 | 99 | <- | Minus |
3L | 15811220..15812897 | 562..2238 | 99 | <- | Minus |
3L | 15813246..15813353 | 454..561 | 100 | <- | Minus |
3L | 15813419..15813626 | 246..453 | 100 | <- | Minus |
3L | 15815936..15816056 | 125..245 | 100 | <- | Minus |
3L | 15816274..15816397 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810079..15810848 | 2239..3009 | 99 | <- | Minus |
3L | 15811220..15812897 | 562..2238 | 99 | <- | Minus |
3L | 15813246..15813353 | 454..561 | 100 | <- | Minus |
3L | 15813419..15813626 | 246..453 | 100 | <- | Minus |
3L | 15815936..15816056 | 125..245 | 100 | <- | Minus |
3L | 15816274..15816397 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15810079..15810848 | 2239..3009 | 99 | <- | Minus |
3L | 15811220..15812897 | 562..2238 | 99 | <- | Minus |
3L | 15813246..15813353 | 454..561 | 100 | <- | Minus |
3L | 15813419..15813626 | 246..453 | 100 | <- | Minus |
3L | 15815936..15816056 | 125..245 | 100 | <- | Minus |
3L | 15816274..15816397 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15803179..15803948 | 2239..3009 | 99 | <- | Minus |
arm_3L | 15804320..15805997 | 562..2238 | 99 | <- | Minus |
arm_3L | 15806346..15806453 | 454..561 | 100 | <- | Minus |
arm_3L | 15806519..15806726 | 246..453 | 100 | <- | Minus |
arm_3L | 15809036..15809156 | 125..245 | 100 | <- | Minus |
arm_3L | 15809374..15809497 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15803179..15803948 | 2239..3009 | 99 | <- | Minus |
3L | 15804320..15805997 | 562..2238 | 99 | <- | Minus |
3L | 15806346..15806453 | 454..561 | 100 | <- | Minus |
3L | 15806519..15806726 | 246..453 | 100 | <- | Minus |
3L | 15809036..15809156 | 125..245 | 100 | <- | Minus |
3L | 15809374..15809497 | 1..124 | 100 | Minus |
Translation from 121 to 699
> RE04270.pep MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20158-PA | 194 | GF20158-PA | 3..194 | 1..192 | 925 | 89.1 | Plus |
Dana\GF10375-PA | 194 | GF10375-PA | 1..156 | 2..157 | 722 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13520-PA | 194 | GG13520-PA | 1..157 | 1..157 | 758 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14474-PA | 206 | GH14474-PA | 12..167 | 2..157 | 661 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fwe-PB | 192 | CG6151-PB | 1..192 | 1..192 | 995 | 100 | Plus |
fwe-PA | 194 | CG6151-PA | 1..157 | 1..157 | 793 | 98.7 | Plus |
fwe-PC | 157 | CG6151-PC | 1..146 | 1..146 | 754 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13620-PA | 194 | GI13620-PA | 1..146 | 2..147 | 583 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24930-PA | 226 | GL24930-PA | 30..186 | 2..157 | 700 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19394-PA | 221 | GA19394-PA | 30..221 | 2..192 | 896 | 87.5 | Plus |
Dpse\GA23559-PA | 51 | GA23559-PA | 1..51 | 142..192 | 257 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24464-PA | 194 | GM24464-PA | 1..157 | 1..157 | 764 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12536-PA | 194 | GD12536-PA | 1..157 | 1..157 | 766 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13956-PA | 195 | GJ13956-PA | 1..147 | 2..147 | 630 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20652-PA | 200 | GK20652-PA | 1..148 | 2..147 | 642 | 83.8 | Plus |
Translation from 121 to 699
> RE04270.hyp MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPT*