Clone RE04270 Report

Search the DGRC for RE04270

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:42
Well:70
Vector:pFlc-1
Associated Gene/Transcriptfwe-RB
Protein status:RE04270.pep: gold
Sequenced Size:3025

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6151 2010-07-15 Manual selection by Sue Celniker

Clone Sequence Records

RE04270.complete Sequence

3025 bp assembled on 2011-02-17

GenBank Submission: BT126043.1

> RE04270.complete
GGTTCGCGTGCAGCAGAACGCAAAGTACAACAGGATTTTTTTCGTTCCGT
GTGACGTGAAAAGTGCAAATAGTAATTGTTCGAATTAGTTTAAGCCTAGC
TAACTAACTAAATAAATAGCCATGTCGTTTGCGGAAAAGATAACGGGTCT
GCTGGCACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGT
ATCTCAAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCC
ATTCTTTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATC
CTGCCTGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGC
TCTTGGAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATC
GCGGAAAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACAT
TGCCATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTAT
TCGGCAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCG
TTAGGCAAGAAAGCTTCTCGAGAGGACATGGCCGCCGCTGCCACATCGCC
CACACAGATGGCCGGCAGTCAGGCGGGCGGTCAGATGCAGATGGGCGGCG
ATCAGCATATCACACTCATGGAAGACCCCGATGTCTGGCGCCCCACATAA
ATTCCTAGCCGCGCCATTAGTAACTGCCAAAAAACCACACTCAGATACAG
ATAAAGACACAGATACTCAGATACACAGATTCACACACAAAATACTCCAC
TAGAAATGCGAACGATGCAAGAATTGATCGAGTAACAAATATTTTACGGC
GCCTAGTTTTTAGTGTTCGTTCCGAGGATAAATGCAACTAAGTGAAAAGG
AAAATCACTACAAAGCAGCATTGTAGGGCATCAGAGAACTAGTATACAGA
ACACCCCACCAAATACAAAAGAAAATTTAACGAAATTCTCATTACTGTTG
AAACCGAGAGTGTTAGTAATCAAAGTATATTTTGGGCAAATGCATTTCCG
TCATTCGACCCCCCGTTTTGCATGGCATTCGTACTATATTCGTATTCAAA
TTTTTTAATATCTTTCGTCGAGCGTTGGTGTTGTTAAGAACTACAGTTAA
ATATATATAATATGCATAGAACAACTACTGATAACAATAACGTAACTCAC
ATGTCAAACTCTGCAGCAAGCATATATTTTTAGTGAGAAACTATATTTGA
AAGCTAACCGAATGCAAGAGGAACCGGAACCTATAAGTTAACCACAGCTT
CCACACACTCACACACAGCTAATGCTAATGGAAAGCCACTGATGATATGG
ACAAGTGAATGTCGAGAACCTAGAGCAATATGTACAACTCAGAAATAATT
AACTTTATATGCTTTGCTTCGATGTAAACCATAAAATTAAATGTTAAACG
TTATTTGAGAATCGATTTGCTCGCGGGATAGTCACAATTTGAAATTGAAC
ATAATCAAGCATACAGATAGAATATATATATATATATATATATACAACAA
GTTGAGAATTTACCAGTTATATTTTTTAAATGTTGTAACCGAAAAGTGTC
CATTTCAATTTGATGCATTGTTAGACGGTTTTCTTTTTAGACAATTACTT
GGTTAATAGGATTTCGTTTTCGGGTTTCGTATGATTTCTTGTTTGCTAGA
AGTATATGCTTATTTTTTTTAGTATACCTAAGTTATTTATAAGAGTTTAT
TCCAATCGTTTAACTTTGAAAGTCTGAGAAAAACGTTTTAAATTATTTTT
GTTGTTGCCTATTGGCATTCTTACCACAGAAGCATTCCAAAATCTGTTTA
CTTTACGCATAAGTTATTGTATAGTTTAATTATTATAACTTTAAATATAC
ATTATTTACAAGAAACTCGCGATAATTTATTACAATTTAGCCTTCGCCAG
CAACTAAGAGTCTCACCTAAAGTAATCACGAATCATAATTAATTTGTTGA
ACTTTGTTAATCAATGAACGCAACACTAAAAATGAAAACATAAACATGTA
AAATATTTCGTTAGAATTTGAACGCGCATGATTCAAATATCAAACACTTT
GTACATGCCACCTGAAAACTGTCCAAAATCCTGCCGTTAAAGCCAAGTAC
ATTCAACGACGGCCAACAGCGATTAACAACAATATACGATTTACGTTAAC
GAGTTCTGAACTTTGCTGCGTCCAAGAGATCACTACAGAGCATCCGCCGA
GGACATGCGGGCAGCTGCTCAGCAAACCTTCGGAGGAAACACACCTGCCC
AAACCAACGATCGAGCGGGGATTGTGAACAACGCCCAGCCCTTCTCCTTC
ACCGGTGCCGTGGGCACGGACAGCAATGTGTGATTCAGAAGCTAGCTGAT
CGGGATTTCGAGGAATCGAAGAGCTGGGTGTGCCGTGAGAAAACAAGACT
CAAAACGCAACATTTGAAGGGCAAACCTAACCAAGAGAACATCGGCAGGC
AATCATAAACATAATCATGTGCAATTTCTGATTGTTCAATAACCAACGCA
AATGGATAACAAAAGTTTTTAAATCCGATTAGCTCTGATCTCTTTCTAGA
GCAATCCAAATTACTCGATCAGAAAGAAGCCACCCAAAACAAGATCATTA
AATTTTAAACCATTTTTGTATTAAATGTATGTAAATGTATATTGGTTTTA
AAAGCGTTTTGCGTTTTCTGTATCCTATTAATTAATTGTGTTGCCTGTGT
CCCATCATTCCAAAACATTTGGTTTCAACTAAGTAGAAATTGCAAATAAA
TTATTGAACGACATCACTAGCGAGGTGAAAAAAAAAGATCATGTAAAATT
TATGTTTAGTCATAGTTTAAATATACCTTAAATATATTTAAATGCATAAT
ACTAAAATGTTTAAATTAATGCAAATAACACTATAAATATTGTATGTAAA
CCATATTAAAATTGAATTAAAGATACTTTAAATTATGTTAAATAAAATTA
ATTATACAGAAAAAAAAAAAAAAAA

RE04270.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15801044..15802721 2238..562 8340 99.9 Minus
chr3L 24539361 chr3L 15799904..15800676 3008..2235 3805 99.7 Minus
chr3L 24539361 chr3L 15803243..15803450 453..246 1040 100 Minus
chr3L 24539361 chr3L 15806098..15806221 124..1 620 100 Minus
chr3L 24539361 chr3L 15805760..15805881 245..124 610 100 Minus
chr3L 24539361 chr3L 15803070..15803177 561..454 540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15811220..15812897 2238..562 8340 99.9 Minus
3L 28110227 3L 15810080..15810852 3008..2235 3820 99.9 Minus
3L 28110227 3L 15813419..15813626 453..246 1040 100 Minus
3L 28110227 3L 15816274..15816397 124..1 620 100 Minus
3L 28110227 3L 15815936..15816057 245..124 610 100 Minus
3L 28110227 3L 15813246..15813353 561..454 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15804320..15805997 2238..562 8350 99.9 Minus
3L 28103327 3L 15803180..15803952 3008..2235 3830 99.8 Minus
3L 28103327 3L 15806519..15806726 453..246 1040 100 Minus
3L 28103327 3L 15809374..15809497 124..1 620 100 Minus
3L 28103327 3L 15809036..15809157 245..124 610 100 Minus
3L 28103327 3L 15806346..15806453 561..454 540 100 Minus
Blast to na_te.dros performed 2019-03-17 01:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 27..95 2933..3001 155 72.9 Plus
invader3 5484 invader3 INVADER3 5484bp 5010..5151 1812..1673 140 57.9 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6186..6527 2675..2997 135 53.2 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 555..717 2741..2577 127 57.4 Minus
G3 4605 G3 G3 4605bp 2759..2824 959..1024 122 68.7 Plus
baggins 5453 baggins BAGGINS 5453bp 2324..2367 1371..1328 120 80 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 531..672 2788..2652 120 58.7 Minus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1933..2033 1484..1584 116 63.5 Plus
invader4 3105 invader4 INVADER4 3105bp 1993..2095 1437..1538 116 59.6 Plus

RE04270.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:42:00 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15806098..15806221 1..124 100   Minus
chr3L 15803243..15803450 246..453 100 <- Minus
chr3L 15805760..15805880 125..245 100 <- Minus
chr3L 15799960..15800672 2239..2952 99 <- Minus
chr3L 15801044..15802721 562..2238 98 <- Minus
chr3L 15803070..15803177 454..561 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 11:50:38 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
flower-RB 1..579 122..700 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:48:26 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 1..579 122..700 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:06:52 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 1..579 122..700 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 11:50:37 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
flower-RB 19..2988 1..2970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:48:26 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 14..2983 1..2970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:06:52 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 14..3020 1..3007 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:00 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810079..15810848 2239..3009 99 <- Minus
3L 15811220..15812897 562..2238 99 <- Minus
3L 15813246..15813353 454..561 100 <- Minus
3L 15813419..15813626 246..453 100 <- Minus
3L 15815936..15816056 125..245 100 <- Minus
3L 15816274..15816397 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:00 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810079..15810848 2239..3009 99 <- Minus
3L 15811220..15812897 562..2238 99 <- Minus
3L 15813246..15813353 454..561 100 <- Minus
3L 15813419..15813626 246..453 100 <- Minus
3L 15815936..15816056 125..245 100 <- Minus
3L 15816274..15816397 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:00 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810079..15810848 2239..3009 99 <- Minus
3L 15811220..15812897 562..2238 99 <- Minus
3L 15813246..15813353 454..561 100 <- Minus
3L 15813419..15813626 246..453 100 <- Minus
3L 15815936..15816056 125..245 100 <- Minus
3L 15816274..15816397 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:48:26 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15803179..15803948 2239..3009 99 <- Minus
arm_3L 15804320..15805997 562..2238 99 <- Minus
arm_3L 15806346..15806453 454..561 100 <- Minus
arm_3L 15806519..15806726 246..453 100 <- Minus
arm_3L 15809036..15809156 125..245 100 <- Minus
arm_3L 15809374..15809497 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:34 Download gff for RE04270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15803179..15803948 2239..3009 99 <- Minus
3L 15804320..15805997 562..2238 99 <- Minus
3L 15806346..15806453 454..561 100 <- Minus
3L 15806519..15806726 246..453 100 <- Minus
3L 15809036..15809156 125..245 100 <- Minus
3L 15809374..15809497 1..124 100   Minus

RE04270.pep Sequence

Translation from 121 to 699

> RE04270.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR
EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPT*

RE04270.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20158-PA 194 GF20158-PA 3..194 1..192 925 89.1 Plus
Dana\GF10375-PA 194 GF10375-PA 1..156 2..157 722 86.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13520-PA 194 GG13520-PA 1..157 1..157 758 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14474-PA 206 GH14474-PA 12..167 2..157 661 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-PB 192 CG6151-PB 1..192 1..192 995 100 Plus
fwe-PA 194 CG6151-PA 1..157 1..157 793 98.7 Plus
fwe-PC 157 CG6151-PC 1..146 1..146 754 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13620-PA 194 GI13620-PA 1..146 2..147 583 76 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24930-PA 226 GL24930-PA 30..186 2..157 700 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19394-PA 221 GA19394-PA 30..221 2..192 896 87.5 Plus
Dpse\GA23559-PA 51 GA23559-PA 1..51 142..192 257 96.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24464-PA 194 GM24464-PA 1..157 1..157 764 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12536-PA 194 GD12536-PA 1..157 1..157 766 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13956-PA 195 GJ13956-PA 1..147 2..147 630 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20652-PA 200 GK20652-PA 1..148 2..147 642 83.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19812-PA 194 GE19812-PA 1..157 1..157 769 94.9 Plus
Dyak\GE19810-PA 91 GE19810-PA 1..41 1..41 224 100 Plus

RE04270.hyp Sequence

Translation from 121 to 699

> RE04270.hyp
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR
EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPT*

RE04270.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-PB 192 CG6151-PB 1..192 1..192 995 100 Plus
fwe-PA 194 CG6151-PA 1..157 1..157 793 98.7 Plus
fwe-PC 157 CG6151-PC 1..146 1..146 754 100 Plus