BDGP Sequence Production Resources |
Search the DGRC for RE04485
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 44 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RhoGAP54D-RB |
Protein status: | RE04485.pep: wuzgold |
Preliminary Size: | 3543 |
Sequenced Size: | 1974 |
Gene | Date | Evidence |
---|---|---|
CG6477 | 2002-09-30 | Blastp of sequenced clone |
CG6477 | 2003-01-01 | Sim4 clustering to Release 3 |
RhoGAP54D | 2008-04-29 | Release 5.5 accounting |
RhoGAP54D | 2008-08-15 | Release 5.9 accounting |
RhoGAP54D | 2008-12-18 | 5.12 accounting |
1974 bp (1974 high quality bases) assembled on 2002-09-30
GenBank Submission: BT001527
> RE04485.complete CTCTGATGTATTTTCCTTCTTTGAATGTAGAATCATCAGAACAGGTGTTC TCGGAGGACAACTTCTTTCTTACCACTGTTGAATTTAGAAATAGATATAT AAAGAATGGAACAATTTTGTCAAAAAAAGATAAAAACGTAGTACGTAATT GTGCTACCAGATCAGCGCGTACGATTTTCTCCCAAAGAGGTCTTAATTTG GCGCTCTAGCCGCGGTCACACTGGTTAGGTAGCGTCTCGTTCAATTTTCA ATTTTAGCTGTTAAAATTTGCGATAAATGTGATAAATGCGAAGTTATATG CTCGCGCATCAAACCTTCGACAATAATACACTCCTCAAAACGAACCCATT ACGGACAGAAGTGAAAGAAGTAGCCTTCGGGTTAACGAAACGAACTTGTC ATTGTCCTTCCAAGTTGTTGTTATTTTCCTTATCCGTTGGCAGTCGTTAT TATTGTTGTTGTTGTCGTTGTTCGTGGATATATACAGTGTTTACTCGATA GTCCCGACGGATAAACCACACAGATTGCATGGAAGCAACGATGGATACGG ACCATGCGAACCTAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATG CGCCGCTGCAATTACGAAAAATACAAATCCTTGGTGCGCATGCACCTATC GTTTGAATTGGAGCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGA TTGTCTACGAGGACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAA AAACATCGTTTGGGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTC CGCCAGTAAATCCGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGA TTGATCCGGGATTCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATG CTGGAGAAGAATCTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGT GTCCCGACAAAACGAACTTCGGATGCACATCCAGCACGACAAACCACTGA ATTTGGAACTTGCGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAA GGTTTTCTATCCGAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCC GGCGCATCTGCAGATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGA CTGCCACTGCTGAGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTA CTTCTCCTCCTGCCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGA GATGCTGCATGCTGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCG ATAACTTGGCCACTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTG CCACCCGAGGTCCTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGAC CTATATGATCGTCCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGT CTACCGACATCCGGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATG TCGCCGGAACAAACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAA CACGGTGTACACTTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATA CGAACAATACGGACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGC ATGCCGGAGTCCTCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCA AAATGGGCAGGGTAAATTACTTTATATATTTAATGCTTTAATGCCCTTTC ACTCTGGGTCTTATGATTTAAATACCTCTGCTAGTAATTTCAAAATTACT TGAATTAAGGTTCAAAATATCTTGAATCTAATTAATATAGTTAATATTAC GGAAGTAAGAAATCTATAGCCAATGTTTAAGTTTGCACATAATAACGAGG TAATTTTTGGGAAAAAGTTAAAATAATTAAAAAAAATATCATTATGATTT ATCAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13475877..13476919 | 1953..911 | 5215 | 100 | Minus |
chr2R | 21145070 | chr2R | 13477271..13477946 | 677..1 | 3320 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 13476973..13477205 | 910..678 | 1165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17588810..17589854 | 1955..911 | 5225 | 100 | Minus |
2R | 25286936 | 2R | 17590206..17590882 | 677..1 | 3385 | 100 | Minus |
2R | 25286936 | 2R | 17589908..17590140 | 910..678 | 1165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17590009..17591053 | 1955..911 | 5225 | 100 | Minus |
2R | 25260384 | 2R | 17591405..17592081 | 677..1 | 3385 | 100 | Minus |
2R | 25260384 | 2R | 17591107..17591339 | 910..678 | 1165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1218..1273 | 83..136 | 113 | 71.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13476973..13477205 | 678..910 | 100 | <- | Minus |
chr2R | 13475877..13476919 | 911..1953 | 97 | <- | Minus |
chr2R | 13477271..13477946 | 1..677 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1275 | 529..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1275 | 529..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RA | 1..1184 | 529..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1275 | 529..1803 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RA | 1..1184 | 529..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1953 | 1..1953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1953 | 1..1953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RA | 3..1714 | 1..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RB | 1..1953 | 1..1953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP54D-RA | 3..1714 | 1..1712 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17588812..17589854 | 911..1953 | 100 | <- | Minus |
2R | 17589908..17590140 | 678..910 | 100 | <- | Minus |
2R | 17590206..17590882 | 1..677 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17588812..17589854 | 911..1953 | 100 | <- | Minus |
2R | 17589908..17590140 | 678..910 | 100 | <- | Minus |
2R | 17590206..17590882 | 1..677 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17588812..17589854 | 911..1953 | 100 | <- | Minus |
2R | 17589908..17590140 | 678..910 | 100 | <- | Minus |
2R | 17590206..17590882 | 1..677 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13476317..13477359 | 911..1953 | 100 | <- | Minus |
arm_2R | 13477413..13477645 | 678..910 | 100 | <- | Minus |
arm_2R | 13477711..13478387 | 1..677 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17590011..17591053 | 911..1953 | 100 | <- | Minus |
2R | 17591107..17591339 | 678..910 | 100 | <- | Minus |
2R | 17591405..17592081 | 1..677 | 100 | Minus |
Translation from 528 to 1802
> RE04485.pep MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI FNALMPFHSGSYDLNTSASNFKIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11586-PA | 1006 | GF11586-PA | 5..401 | 7..401 | 1797 | 91.9 | Plus |
Dana\GF17627-PA | 752 | GF17627-PA | 269..523 | 113..367 | 166 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21038-PA | 999 | GG21038-PA | 1..397 | 5..401 | 2109 | 97.2 | Plus |
Dere\RhoGAP92B-PA | 744 | GG23592-PA | 264..508 | 113..360 | 171 | 27.7 | Plus |
Dere\GG16384-PA | 200 | GG16384-PA | 15..157 | 126..269 | 167 | 32.5 | Plus |
Dere\GG21381-PA | 629 | GG21381-PA | 390..583 | 124..319 | 159 | 24.6 | Plus |
Dere\GG15561-PA | 476 | GG15561-PA | 308..437 | 129..272 | 154 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21814-PA | 410 | GH21814-PA | 1..404 | 5..401 | 1626 | 81.4 | Plus |
Dgri\GH13675-PA | 1019 | GH13675-PA | 588..720 | 122..262 | 154 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RhoGAP54D-PC | 1004 | CG6477-PC | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP54D-PA | 1004 | CG6477-PA | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP92B-PC | 543 | CG4755-PC | 67..311 | 113..360 | 182 | 27.7 | Plus |
RhoGAP92B-PD | 648 | CG4755-PD | 172..416 | 113..360 | 182 | 27.7 | Plus |
RhoGAP92B-PE | 740 | CG4755-PE | 264..508 | 113..360 | 182 | 27.7 | Plus |
RhoGAP92B-PA | 740 | CG4755-PA | 264..508 | 113..360 | 182 | 27.7 | Plus |
conu-PI | 629 | CG17082-PI | 390..583 | 124..319 | 160 | 24.2 | Plus |
conu-PG | 629 | CG17082-PG | 390..583 | 124..319 | 160 | 24.2 | Plus |
conu-PA | 629 | CG17082-PA | 390..583 | 124..319 | 160 | 24.2 | Plus |
conu-PD | 629 | CG17082-PD | 390..583 | 124..319 | 160 | 24.2 | Plus |
conu-PB | 629 | CG17082-PB | 390..583 | 124..319 | 160 | 24.2 | Plus |
RhoGAP5A-PA | 494 | CG3208-PA | 332..486 | 127..292 | 157 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20786-PA | 1031 | GI20786-PA | 1..403 | 5..401 | 1709 | 82.4 | Plus |
Dmoj\GI14109-PA | 182 | GI14109-PA | 16..169 | 126..282 | 162 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17687-PA | 999 | GL17687-PA | 1..394 | 5..401 | 1649 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24875-PA | 999 | GA24875-PA | 1..394 | 5..401 | 1655 | 85.7 | Plus |
Dpse\GA24875-PB | 452 | GA24875-PB | 1..391 | 5..398 | 1639 | 86.3 | Plus |
Dpse\GA23702-PA | 435 | GA23702-PA | 270..399 | 129..272 | 151 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19966-PA | 1001 | GM19966-PA | 1..397 | 5..401 | 2111 | 97.5 | Plus |
Dsec\GM26873-PA | 740 | GM26873-PA | 264..508 | 113..360 | 172 | 27.7 | Plus |
Dsec\GM26791-PA | 198 | GM26791-PA | 15..157 | 126..269 | 159 | 30.8 | Plus |
Dsec\GM25330-PA | 476 | GM25330-PA | 308..437 | 129..272 | 154 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25460-PA | 798 | GD25460-PA | 2..194 | 209..401 | 1000 | 97.4 | Plus |
Dsim\GD25459-PA | 195 | GD25459-PA | 1..176 | 1..176 | 927 | 97.2 | Plus |
Dsim\GD19322-PA | 731 | GD19322-PA | 255..499 | 113..360 | 172 | 27.3 | Plus |
Dsim\GD11944-PA | 629 | GD11944-PA | 390..571 | 124..307 | 155 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20520-PA | 1013 | GJ20520-PA | 1..403 | 5..401 | 1644 | 85.4 | Plus |
Dvir\GJ10998-PA | 766 | GJ10998-PA | 267..488 | 113..337 | 158 | 27.8 | Plus |
Dvir\GJ17092-PA | 183 | GJ17092-PA | 5..170 | 110..282 | 155 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10667-PA | 1046 | GK10667-PA | 4..396 | 6..401 | 1589 | 83.9 | Plus |
Dwil\GK17548-PA | 482 | GK17548-PA | 312..441 | 129..272 | 160 | 29.9 | Plus |
Dwil\GK11942-PA | 816 | GK11942-PA | 79..200 | 132..269 | 159 | 31.9 | Plus |
Dwil\GK13678-PA | 206 | GK13678-PA | 28..182 | 110..269 | 148 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13981-PA | 997 | GE13981-PA | 1..397 | 5..401 | 2101 | 97.2 | Plus |
Dyak\GE14545-PA | 196 | GE14545-PA | 15..157 | 126..269 | 177 | 33.1 | Plus |
Dyak\GE25634-PA | 740 | GE25634-PA | 264..508 | 113..360 | 173 | 27.7 | Plus |
Dyak\GE20111-PA | 629 | GE20111-PA | 390..583 | 124..319 | 154 | 24.6 | Plus |
Dyak\GE21888-PA | 474 | GE21888-PA | 306..435 | 129..272 | 151 | 29.9 | Plus |
Translation from 528 to 1802
> RE04485.hyp MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI FNALMPFHSGSYDLNTSASNFKIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RhoGAP54D-PC | 1004 | CG6477-PC | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP54D-PA | 1004 | CG6477-PA | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP92B-PC | 543 | CG4755-PC | 67..311 | 113..360 | 182 | 27.7 | Plus |
RhoGAP92B-PD | 648 | CG4755-PD | 172..416 | 113..360 | 182 | 27.7 | Plus |
conu-PI | 629 | CG17082-PI | 390..583 | 124..319 | 160 | 24.2 | Plus |