Clone RE04485 Report

Search the DGRC for RE04485

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:44
Well:85
Vector:pFlc-1
Associated Gene/TranscriptRhoGAP54D-RB
Protein status:RE04485.pep: wuzgold
Preliminary Size:3543
Sequenced Size:1974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6477 2002-09-30 Blastp of sequenced clone
CG6477 2003-01-01 Sim4 clustering to Release 3
RhoGAP54D 2008-04-29 Release 5.5 accounting
RhoGAP54D 2008-08-15 Release 5.9 accounting
RhoGAP54D 2008-12-18 5.12 accounting

Clone Sequence Records

RE04485.complete Sequence

1974 bp (1974 high quality bases) assembled on 2002-09-30

GenBank Submission: BT001527

> RE04485.complete
CTCTGATGTATTTTCCTTCTTTGAATGTAGAATCATCAGAACAGGTGTTC
TCGGAGGACAACTTCTTTCTTACCACTGTTGAATTTAGAAATAGATATAT
AAAGAATGGAACAATTTTGTCAAAAAAAGATAAAAACGTAGTACGTAATT
GTGCTACCAGATCAGCGCGTACGATTTTCTCCCAAAGAGGTCTTAATTTG
GCGCTCTAGCCGCGGTCACACTGGTTAGGTAGCGTCTCGTTCAATTTTCA
ATTTTAGCTGTTAAAATTTGCGATAAATGTGATAAATGCGAAGTTATATG
CTCGCGCATCAAACCTTCGACAATAATACACTCCTCAAAACGAACCCATT
ACGGACAGAAGTGAAAGAAGTAGCCTTCGGGTTAACGAAACGAACTTGTC
ATTGTCCTTCCAAGTTGTTGTTATTTTCCTTATCCGTTGGCAGTCGTTAT
TATTGTTGTTGTTGTCGTTGTTCGTGGATATATACAGTGTTTACTCGATA
GTCCCGACGGATAAACCACACAGATTGCATGGAAGCAACGATGGATACGG
ACCATGCGAACCTAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATG
CGCCGCTGCAATTACGAAAAATACAAATCCTTGGTGCGCATGCACCTATC
GTTTGAATTGGAGCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGA
TTGTCTACGAGGACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAA
AAACATCGTTTGGGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTC
CGCCAGTAAATCCGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGA
TTGATCCGGGATTCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATG
CTGGAGAAGAATCTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGT
GTCCCGACAAAACGAACTTCGGATGCACATCCAGCACGACAAACCACTGA
ATTTGGAACTTGCGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAA
GGTTTTCTATCCGAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCC
GGCGCATCTGCAGATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGA
CTGCCACTGCTGAGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTA
CTTCTCCTCCTGCCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGA
GATGCTGCATGCTGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCG
ATAACTTGGCCACTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTG
CCACCCGAGGTCCTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGAC
CTATATGATCGTCCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGT
CTACCGACATCCGGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATG
TCGCCGGAACAAACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAA
CACGGTGTACACTTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATA
CGAACAATACGGACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGC
ATGCCGGAGTCCTCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCA
AAATGGGCAGGGTAAATTACTTTATATATTTAATGCTTTAATGCCCTTTC
ACTCTGGGTCTTATGATTTAAATACCTCTGCTAGTAATTTCAAAATTACT
TGAATTAAGGTTCAAAATATCTTGAATCTAATTAATATAGTTAATATTAC
GGAAGTAAGAAATCTATAGCCAATGTTTAAGTTTGCACATAATAACGAGG
TAATTTTTGGGAAAAAGTTAAAATAATTAAAAAAAATATCATTATGATTT
ATCAAAAAAAAAAAAAAAAAAAAA

RE04485.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-RB 1953 RhoGAP54D-RB 1..1953 1..1953 9765 100 Plus
RhoGAP54D-RA 3793 RhoGAP54D-RA 1..1712 1..1712 8560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13475877..13476919 1953..911 5215 100 Minus
chr2R 21145070 chr2R 13477271..13477946 677..1 3320 99.7 Minus
chr2R 21145070 chr2R 13476973..13477205 910..678 1165 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17588810..17589854 1955..911 5225 100 Minus
2R 25286936 2R 17590206..17590882 677..1 3385 100 Minus
2R 25286936 2R 17589908..17590140 910..678 1165 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17590009..17591053 1955..911 5225 100 Minus
2R 25260384 2R 17591405..17592081 677..1 3385 100 Minus
2R 25260384 2R 17591107..17591339 910..678 1165 100 Minus
Blast to na_te.dros performed 2019-03-15 15:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1218..1273 83..136 113 71.9 Plus

RE04485.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:14:06 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13476973..13477205 678..910 100 <- Minus
chr2R 13475877..13476919 911..1953 97 <- Minus
chr2R 13477271..13477946 1..677 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:33 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1275 529..1803 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:15:57 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1275 529..1803 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:07:47 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 1..1184 529..1712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:06:53 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1275 529..1803 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:51 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 1..1184 529..1712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:39:43 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1953 1..1953 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:15:56 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1953 1..1953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:47 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 3..1714 1..1712 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:06:53 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1953 1..1953 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:51 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 3..1714 1..1712 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:06 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17588812..17589854 911..1953 100 <- Minus
2R 17589908..17590140 678..910 100 <- Minus
2R 17590206..17590882 1..677 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:06 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17588812..17589854 911..1953 100 <- Minus
2R 17589908..17590140 678..910 100 <- Minus
2R 17590206..17590882 1..677 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:06 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17588812..17589854 911..1953 100 <- Minus
2R 17589908..17590140 678..910 100 <- Minus
2R 17590206..17590882 1..677 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:47 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13476317..13477359 911..1953 100 <- Minus
arm_2R 13477413..13477645 678..910 100 <- Minus
arm_2R 13477711..13478387 1..677 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:38:55 Download gff for RE04485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17590011..17591053 911..1953 100 <- Minus
2R 17591107..17591339 678..910 100 <- Minus
2R 17591405..17592081 1..677 100   Minus

RE04485.pep Sequence

Translation from 528 to 1802

> RE04485.pep
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI
FNALMPFHSGSYDLNTSASNFKIT*

RE04485.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11586-PA 1006 GF11586-PA 5..401 7..401 1797 91.9 Plus
Dana\GF17627-PA 752 GF17627-PA 269..523 113..367 166 27 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21038-PA 999 GG21038-PA 1..397 5..401 2109 97.2 Plus
Dere\RhoGAP92B-PA 744 GG23592-PA 264..508 113..360 171 27.7 Plus
Dere\GG16384-PA 200 GG16384-PA 15..157 126..269 167 32.5 Plus
Dere\GG21381-PA 629 GG21381-PA 390..583 124..319 159 24.6 Plus
Dere\GG15561-PA 476 GG15561-PA 308..437 129..272 154 30.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21814-PA 410 GH21814-PA 1..404 5..401 1626 81.4 Plus
Dgri\GH13675-PA 1019 GH13675-PA 588..720 122..262 154 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-PC 1004 CG6477-PC 1..400 1..400 2042 99 Plus
RhoGAP54D-PA 1004 CG6477-PA 1..400 1..400 2042 99 Plus
RhoGAP92B-PC 543 CG4755-PC 67..311 113..360 182 27.7 Plus
RhoGAP92B-PD 648 CG4755-PD 172..416 113..360 182 27.7 Plus
RhoGAP92B-PE 740 CG4755-PE 264..508 113..360 182 27.7 Plus
RhoGAP92B-PA 740 CG4755-PA 264..508 113..360 182 27.7 Plus
conu-PI 629 CG17082-PI 390..583 124..319 160 24.2 Plus
conu-PG 629 CG17082-PG 390..583 124..319 160 24.2 Plus
conu-PA 629 CG17082-PA 390..583 124..319 160 24.2 Plus
conu-PD 629 CG17082-PD 390..583 124..319 160 24.2 Plus
conu-PB 629 CG17082-PB 390..583 124..319 160 24.2 Plus
RhoGAP5A-PA 494 CG3208-PA 332..486 127..292 157 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20786-PA 1031 GI20786-PA 1..403 5..401 1709 82.4 Plus
Dmoj\GI14109-PA 182 GI14109-PA 16..169 126..282 162 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17687-PA 999 GL17687-PA 1..394 5..401 1649 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24875-PA 999 GA24875-PA 1..394 5..401 1655 85.7 Plus
Dpse\GA24875-PB 452 GA24875-PB 1..391 5..398 1639 86.3 Plus
Dpse\GA23702-PA 435 GA23702-PA 270..399 129..272 151 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19966-PA 1001 GM19966-PA 1..397 5..401 2111 97.5 Plus
Dsec\GM26873-PA 740 GM26873-PA 264..508 113..360 172 27.7 Plus
Dsec\GM26791-PA 198 GM26791-PA 15..157 126..269 159 30.8 Plus
Dsec\GM25330-PA 476 GM25330-PA 308..437 129..272 154 30.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25460-PA 798 GD25460-PA 2..194 209..401 1000 97.4 Plus
Dsim\GD25459-PA 195 GD25459-PA 1..176 1..176 927 97.2 Plus
Dsim\GD19322-PA 731 GD19322-PA 255..499 113..360 172 27.3 Plus
Dsim\GD11944-PA 629 GD11944-PA 390..571 124..307 155 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20520-PA 1013 GJ20520-PA 1..403 5..401 1644 85.4 Plus
Dvir\GJ10998-PA 766 GJ10998-PA 267..488 113..337 158 27.8 Plus
Dvir\GJ17092-PA 183 GJ17092-PA 5..170 110..282 155 30.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10667-PA 1046 GK10667-PA 4..396 6..401 1589 83.9 Plus
Dwil\GK17548-PA 482 GK17548-PA 312..441 129..272 160 29.9 Plus
Dwil\GK11942-PA 816 GK11942-PA 79..200 132..269 159 31.9 Plus
Dwil\GK13678-PA 206 GK13678-PA 28..182 110..269 148 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13981-PA 997 GE13981-PA 1..397 5..401 2101 97.2 Plus
Dyak\GE14545-PA 196 GE14545-PA 15..157 126..269 177 33.1 Plus
Dyak\GE25634-PA 740 GE25634-PA 264..508 113..360 173 27.7 Plus
Dyak\GE20111-PA 629 GE20111-PA 390..583 124..319 154 24.6 Plus
Dyak\GE21888-PA 474 GE21888-PA 306..435 129..272 151 29.9 Plus

RE04485.hyp Sequence

Translation from 528 to 1802

> RE04485.hyp
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI
FNALMPFHSGSYDLNTSASNFKIT*

RE04485.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-PC 1004 CG6477-PC 1..400 1..400 2042 99 Plus
RhoGAP54D-PA 1004 CG6477-PA 1..400 1..400 2042 99 Plus
RhoGAP92B-PC 543 CG4755-PC 67..311 113..360 182 27.7 Plus
RhoGAP92B-PD 648 CG4755-PD 172..416 113..360 182 27.7 Plus
conu-PI 629 CG17082-PI 390..583 124..319 160 24.2 Plus