BDGP Sequence Production Resources |
Search the DGRC for RE04530
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 45 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9018-RB |
Protein status: | RE04530.pep: gold |
Preliminary Size: | 1369 |
Sequenced Size: | 1303 |
Gene | Date | Evidence |
---|---|---|
CG9018 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9018 | 2002-03-28 | Blastp of sequenced clone |
CG9018 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9018 | 2008-04-29 | Release 5.5 accounting |
CG9018 | 2008-08-15 | Release 5.9 accounting |
CG9018 | 2008-12-18 | 5.12 accounting |
1303 bp (1303 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094845
> RE04530.complete ATTTTTGGTCAAAAATAGATACGCATTCCAAGCTGTTTATTTTTCAGAAA CTTGCAAATATTGCAATCGTTCGACTGATTTGATAATAAGTACGGAAAAG CGGCGGAAAAGCAGCAGCAGCCATGTCGGCCTTCACGGATTCGGCGCTAC TCAAGAAGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTC TCCCTGTGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGAC CTGGCAGCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCA TGTACCTGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAG TACGGCAAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGG CGAGAAGTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAA ACATCTGGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGG AGGTCGCGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGG CAAGACCAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCG GCAGCGGCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAG GATCGCCACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAG CGCGAACTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGA ACGGCCACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAG GAGCTCATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGC TGTGGTGCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTA GCTGCATCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATA CAGGTGAACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGC GGCGGAGATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTC AAGCGGAGCAGAAGGAACTTCTCTCCCAGGCTGAGCAACGCCTCGATGTA CGTTCTTCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGATAAAG ATCGTTATCCAAAAACTATGGGATGTTGTTCGTCACTGCCTCTATTTTAT GTTACCTAGTCTAGTCGTTTGTCGGCTATCCACATTTTGTATTAATATTT TATTTGCATATTAAAAAAGAAACCGAAGCTAATCTAAGCAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 2235447..2236130 | 956..273 | 3420 | 100 | Minus |
chr3L | 24539361 | chr3L | 2235041..2235374 | 1287..952 | 1615 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 2236201..2236471 | 273..3 | 1355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 2236047..2236730 | 956..273 | 3420 | 100 | Minus |
3L | 28110227 | 3L | 2235639..2235974 | 1287..952 | 1680 | 100 | Minus |
3L | 28110227 | 3L | 2236801..2237071 | 273..3 | 1355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 2236047..2236730 | 956..273 | 3420 | 100 | Minus |
3L | 28103327 | 3L | 2235639..2235974 | 1287..952 | 1680 | 100 | Minus |
3L | 28103327 | 3L | 2236801..2237071 | 273..3 | 1355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G6 | 2042 | G6 G6_DM 2042bp | 397..530 | 531..678 | 127 | 63.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 2235038..2235372 | 954..1289 | 99 | <- | Minus |
chr3L | 2235450..2236129 | 274..953 | 100 | <- | Minus |
chr3L | 2236201..2236472 | 1..273 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 1..1026 | 123..1148 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 1..1026 | 123..1148 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 1..1026 | 123..1148 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 1..1026 | 123..1148 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 1..1026 | 123..1148 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 2..1289 | 3..1289 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 2..1289 | 3..1289 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 5..1283 | 1..1280 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 2..1289 | 3..1289 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9018-RB | 5..1283 | 1..1280 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2235636..2235972 | 954..1289 | 99 | <- | Minus |
3L | 2236050..2236729 | 274..953 | 100 | <- | Minus |
3L | 2236801..2237072 | 1..273 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2235636..2235972 | 954..1289 | 99 | <- | Minus |
3L | 2236050..2236729 | 274..953 | 100 | <- | Minus |
3L | 2236801..2237072 | 1..273 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2235636..2235972 | 954..1289 | 99 | <- | Minus |
3L | 2236050..2236729 | 274..953 | 100 | <- | Minus |
3L | 2236801..2237072 | 1..273 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 2235636..2235972 | 954..1289 | 99 | <- | Minus |
arm_3L | 2236050..2236729 | 274..953 | 100 | <- | Minus |
arm_3L | 2236801..2237072 | 1..273 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2235636..2235972 | 954..1289 | 99 | <- | Minus |
3L | 2236050..2236729 | 274..953 | 100 | <- | Minus |
3L | 2236801..2237072 | 1..273 | 99 | Minus |
Translation from 122 to 1147
> RE04530.hyp MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9018-PB | 341 | CG9018-PB | 1..341 | 1..341 | 1746 | 100 | Plus |
CG9018-PA | 375 | CG9018-PA | 1..325 | 1..325 | 1663 | 100 | Plus |
CG15160-PB | 818 | CG15160-PB | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PA | 822 | CG15160-PA | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PC | 834 | CG15160-PC | 5..135 | 4..138 | 172 | 29.6 | Plus |
Translation from 122 to 1147
> RE04530.pep MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24928-PA | 379 | GF24928-PA | 1..329 | 1..325 | 1312 | 85 | Plus |
Dana\GF15060-PA | 803 | GF15060-PA | 4..135 | 3..138 | 169 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14526-PA | 379 | GG14526-PA | 1..329 | 1..325 | 1492 | 92.4 | Plus |
Dere\GG21119-PA | 818 | GG21119-PA | 4..135 | 3..138 | 171 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16483-PA | 386 | GH16483-PA | 1..336 | 1..325 | 1199 | 72.1 | Plus |
Dgri\GH11215-PA | 839 | GH11215-PA | 8..151 | 4..147 | 167 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9018-PB | 341 | CG9018-PB | 1..341 | 1..341 | 1746 | 100 | Plus |
CG9018-PA | 375 | CG9018-PA | 1..325 | 1..325 | 1663 | 100 | Plus |
CG15160-PB | 818 | CG15160-PB | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PA | 822 | CG15160-PA | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PC | 834 | CG15160-PC | 5..135 | 4..138 | 172 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12155-PA | 384 | GI12155-PA | 1..334 | 1..325 | 1138 | 73.5 | Plus |
Dmoj\GI14141-PA | 875 | GI14141-PA | 20..163 | 3..146 | 175 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24624-PA | 377 | GL24624-PA | 1..327 | 1..325 | 1214 | 79.9 | Plus |
Dper\GL19378-PA | 855 | GL19378-PA | 10..140 | 4..138 | 176 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21481-PA | 381 | GA21481-PA | 1..331 | 1..325 | 1235 | 79.2 | Plus |
Dpse\GA13540-PA | 855 | GA13540-PA | 4..140 | 1..138 | 176 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14131-PA | 375 | GM14131-PA | 1..325 | 1..325 | 1665 | 97.8 | Plus |
Dsec\GM17280-PA | 775 | GM17280-PA | 4..135 | 3..138 | 171 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13399-PA | 375 | GD13399-PA | 1..325 | 1..325 | 1665 | 97.8 | Plus |
Dsim\GD24142-PA | 806 | GD24142-PA | 4..135 | 3..138 | 171 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13434-PA | 374 | GJ13434-PA | 1..324 | 1..325 | 1141 | 74.5 | Plus |
Dvir\GJ17766-PA | 844 | GJ17766-PA | 8..151 | 4..147 | 175 | 29.1 | Plus |