Clone RE04530 Report

Search the DGRC for RE04530

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:45
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG9018-RB
Protein status:RE04530.pep: gold
Preliminary Size:1369
Sequenced Size:1303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9018 2002-01-01 Sim4 clustering to Release 2
CG9018 2002-03-28 Blastp of sequenced clone
CG9018 2003-01-01 Sim4 clustering to Release 3
CG9018 2008-04-29 Release 5.5 accounting
CG9018 2008-08-15 Release 5.9 accounting
CG9018 2008-12-18 5.12 accounting

Clone Sequence Records

RE04530.complete Sequence

1303 bp (1303 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094845

> RE04530.complete
ATTTTTGGTCAAAAATAGATACGCATTCCAAGCTGTTTATTTTTCAGAAA
CTTGCAAATATTGCAATCGTTCGACTGATTTGATAATAAGTACGGAAAAG
CGGCGGAAAAGCAGCAGCAGCCATGTCGGCCTTCACGGATTCGGCGCTAC
TCAAGAAGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTC
TCCCTGTGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGAC
CTGGCAGCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCA
TGTACCTGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAG
TACGGCAAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGG
CGAGAAGTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAA
ACATCTGGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGG
AGGTCGCGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGG
CAAGACCAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCG
GCAGCGGCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAG
GATCGCCACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAG
CGCGAACTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGA
ACGGCCACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAG
GAGCTCATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGC
TGTGGTGCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTA
GCTGCATCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATA
CAGGTGAACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGC
GGCGGAGATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTC
AAGCGGAGCAGAAGGAACTTCTCTCCCAGGCTGAGCAACGCCTCGATGTA
CGTTCTTCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGATAAAG
ATCGTTATCCAAAAACTATGGGATGTTGTTCGTCACTGCCTCTATTTTAT
GTTACCTAGTCTAGTCGTTTGTCGGCTATCCACATTTTGTATTAATATTT
TATTTGCATATTAAAAAAGAAACCGAAGCTAATCTAAGCAAAAAAAAAAA
AAA

RE04530.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-RB 1318 CG9018-RB 14..1298 3..1287 6425 100 Plus
CG9018-RA 1426 CG9018-RA 35..1130 3..1098 5480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2235447..2236130 956..273 3420 100 Minus
chr3L 24539361 chr3L 2235041..2235374 1287..952 1615 99.4 Minus
chr3L 24539361 chr3L 2236201..2236471 273..3 1355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2236047..2236730 956..273 3420 100 Minus
3L 28110227 3L 2235639..2235974 1287..952 1680 100 Minus
3L 28110227 3L 2236801..2237071 273..3 1355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2236047..2236730 956..273 3420 100 Minus
3L 28103327 3L 2235639..2235974 1287..952 1680 100 Minus
3L 28103327 3L 2236801..2237071 273..3 1355 100 Minus
Blast to na_te.dros performed 2019-03-15 23:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 397..530 531..678 127 63.8 Plus

RE04530.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:17:08 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2235038..2235372 954..1289 99 <- Minus
chr3L 2235450..2236129 274..953 100 <- Minus
chr3L 2236201..2236472 1..273 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:35 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:52 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:41 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:00 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:46 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 1..1026 123..1148 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:42 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 2..1289 3..1289 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:52 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 2..1289 3..1289 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:41 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 5..1283 1..1280 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:00 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 2..1289 3..1289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:46 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
CG9018-RB 5..1283 1..1280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:08 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2235636..2235972 954..1289 99 <- Minus
3L 2236050..2236729 274..953 100 <- Minus
3L 2236801..2237072 1..273 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:08 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2235636..2235972 954..1289 99 <- Minus
3L 2236050..2236729 274..953 100 <- Minus
3L 2236801..2237072 1..273 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:08 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2235636..2235972 954..1289 99 <- Minus
3L 2236050..2236729 274..953 100 <- Minus
3L 2236801..2237072 1..273 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:41 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2235636..2235972 954..1289 99 <- Minus
arm_3L 2236050..2236729 274..953 100 <- Minus
arm_3L 2236801..2237072 1..273 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:57 Download gff for RE04530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2235636..2235972 954..1289 99 <- Minus
3L 2236050..2236729 274..953 100 <- Minus
3L 2236801..2237072 1..273 99   Minus

RE04530.hyp Sequence

Translation from 122 to 1147

> RE04530.hyp
MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN
VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK
LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE
KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT
EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA
KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS
KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*

RE04530.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-PB 341 CG9018-PB 1..341 1..341 1746 100 Plus
CG9018-PA 375 CG9018-PA 1..325 1..325 1663 100 Plus
CG15160-PB 818 CG15160-PB 5..135 4..138 172 29.6 Plus
CG15160-PA 822 CG15160-PA 5..135 4..138 172 29.6 Plus
CG15160-PC 834 CG15160-PC 5..135 4..138 172 29.6 Plus

RE04530.pep Sequence

Translation from 122 to 1147

> RE04530.pep
MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN
VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK
LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE
KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT
EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA
KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS
KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVR*

RE04530.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24928-PA 379 GF24928-PA 1..329 1..325 1312 85 Plus
Dana\GF15060-PA 803 GF15060-PA 4..135 3..138 169 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14526-PA 379 GG14526-PA 1..329 1..325 1492 92.4 Plus
Dere\GG21119-PA 818 GG21119-PA 4..135 3..138 171 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16483-PA 386 GH16483-PA 1..336 1..325 1199 72.1 Plus
Dgri\GH11215-PA 839 GH11215-PA 8..151 4..147 167 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9018-PB 341 CG9018-PB 1..341 1..341 1746 100 Plus
CG9018-PA 375 CG9018-PA 1..325 1..325 1663 100 Plus
CG15160-PB 818 CG15160-PB 5..135 4..138 172 29.6 Plus
CG15160-PA 822 CG15160-PA 5..135 4..138 172 29.6 Plus
CG15160-PC 834 CG15160-PC 5..135 4..138 172 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12155-PA 384 GI12155-PA 1..334 1..325 1138 73.5 Plus
Dmoj\GI14141-PA 875 GI14141-PA 20..163 3..146 175 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24624-PA 377 GL24624-PA 1..327 1..325 1214 79.9 Plus
Dper\GL19378-PA 855 GL19378-PA 10..140 4..138 176 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21481-PA 381 GA21481-PA 1..331 1..325 1235 79.2 Plus
Dpse\GA13540-PA 855 GA13540-PA 4..140 1..138 176 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14131-PA 375 GM14131-PA 1..325 1..325 1665 97.8 Plus
Dsec\GM17280-PA 775 GM17280-PA 4..135 3..138 171 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13399-PA 375 GD13399-PA 1..325 1..325 1665 97.8 Plus
Dsim\GD24142-PA 806 GD24142-PA 4..135 3..138 171 29.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13434-PA 374 GJ13434-PA 1..324 1..325 1141 74.5 Plus
Dvir\GJ17766-PA 844 GJ17766-PA 8..151 4..147 175 29.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12596-PA 381 GK12596-PA 1..331 1..325 1220 77.7 Plus
Dwil\GK24388-PA 829 GK24388-PA 10..138 3..135 170 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20876-PA 382 GE20876-PA 1..332 1..325 1454 91 Plus
Dyak\GE13193-PA 822 GE13193-PA 4..135 3..138 170 29.4 Plus