Clone RE04676 Report

Search the DGRC for RE04676

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:46
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG31265-RA
Protein status:RE04676.pep: gold
Preliminary Size:1542
Sequenced Size:919

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5233 2002-01-01 Sim4 clustering to Release 2
CG31265 2002-06-11 Blastp of sequenced clone
CG31265 2003-01-01 Sim4 clustering to Release 3
CG31265 2008-04-29 Release 5.5 accounting
CG31265 2008-08-15 Release 5.9 accounting
CG31265 2008-12-18 5.12 accounting

Clone Sequence Records

RE04676.complete Sequence

919 bp (919 high quality bases) assembled on 2002-06-11

GenBank Submission: AY070950

> RE04676.complete
AGTACTTGGTCAAACCTTCGAGATGAAGCTGCTCCGTCTAAGCCTTTTAA
TTCTCCTAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTT
GGCCCCTTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGC
TGAGATCGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCT
CCCATAATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCT
GGACACTGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGG
CACCAATAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCC
ACAAACACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTG
GTGAAGCTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGC
TTTGCCAACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCT
GGGGCTCCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTG
ACCGTGGGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAAC
CAGCAGCATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGG
GCGCCTGTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTG
GTGGGTGTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGT
GCAGGCCAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTG
GCAACAACAAATGCTACTACTAATTTACTTACCAAATTGAATTAGTAAAT
TGTTAGAAAGATTTCAGAGGAAAATAAAGAAAAATTAAGACTATTATAAA
AAAAGAAAAAAAAAAAAAA

RE04676.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-RA 897 CG31265-RA 1..897 1..897 4485 100 Plus
CG31269-RB 952 CG31269-RB 614..732 613..731 235 79.8 Plus
CG4053-RA 732 CG4053-RA 595..716 617..738 205 77.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12952648..12953548 1..901 4415 99.3 Plus
chr3R 27901430 chr3R 12952149..12952267 613..731 235 79.8 Plus
chr3R 27901430 chr3R 12955868..12955989 738..617 205 77.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17128224..17129124 1..901 4505 100 Plus
3R 32079331 3R 17127724..17127842 613..731 235 79.8 Plus
3R 32079331 3R 17131444..17131565 738..617 205 77.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16869055..16869955 1..901 4505 100 Plus
3R 31820162 3R 16868555..16868673 613..731 235 79.8 Plus
3R 31820162 3R 16872275..16872396 738..617 205 77.8 Minus
Blast to na_te.dros performed 2019-03-15 15:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 4666..4711 893..844 123 78 Minus

RE04676.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:14:08 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12952648..12953549 1..905 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:38 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 23..823 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:16 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 23..823 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:07:50 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 23..823 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:03 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 23..823 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:53 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..801 23..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:53 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..897 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:16 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..897 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:50 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 13..909 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:03 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 1..901 1..901 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:53 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG31265-RA 13..909 1..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:08 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17128224..17129125 1..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:08 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17128224..17129125 1..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:08 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17128224..17129125 1..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:50 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12953946..12954847 1..905 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:49 Download gff for RE04676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16869055..16869956 1..905 99   Plus

RE04676.hyp Sequence

Translation from 0 to 822

> RE04676.hyp
VLGQTFEMKLLRLSLLILLAVKPPNPCESKRIVGPFPAGQSGRIKGGEEA
EIGFAPYQVSLQPIVGSHNCGGAILNENWIITAGHCVENFIPALVNVITG
TNKWAEPGAIYYTAEIHKHCMYDQPYMHNDIALVKLTENITFNELTQPIA
LPTRPVQLGEEIVLTGWGSDVAYGSSMEDLHKLTVGLVPLDECYETFNRT
SSMGVGHICTFSREGEGACHGDSGGPLVSNGQLVGVVNWGRPCGVGLPDV
QANVYYYLDWIRSKLSGNNKCYY*

RE04676.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-PA 266 CG31265-PA 1..266 8..273 1444 100 Plus
CG31269-PB 273 CG31269-PB 6..265 15..271 763 57.9 Plus
CG17475-PB 288 CG17475-PB 49..281 43..272 630 49.8 Plus
CG17475-PA 288 CG17475-PA 49..281 43..272 630 49.8 Plus
CG17477-PA 267 CG17477-PA 27..257 44..271 598 49.4 Plus

RE04676.pep Sequence

Translation from 22 to 822

> RE04676.pep
MKLLRLSLLILLAVKPPNPCESKRIVGPFPAGQSGRIKGGEEAEIGFAPY
QVSLQPIVGSHNCGGAILNENWIITAGHCVENFIPALVNVITGTNKWAEP
GAIYYTAEIHKHCMYDQPYMHNDIALVKLTENITFNELTQPIALPTRPVQ
LGEEIVLTGWGSDVAYGSSMEDLHKLTVGLVPLDECYETFNRTSSMGVGH
ICTFSREGEGACHGDSGGPLVSNGQLVGVVNWGRPCGVGLPDVQANVYYY
LDWIRSKLSGNNKCYY*

RE04676.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19903-PA 267 GF19903-PA 18..267 19..266 982 70.8 Plus
Dana\GF17129-PA 274 GF17129-PA 1..265 4..264 718 53.2 Plus
Dana\GF17863-PA 269 GF17863-PA 21..259 29..264 588 47.7 Plus
Dana\GF17862-PA 288 GF17862-PA 31..274 17..260 586 46.3 Plus
Dana\GF17861-PA 252 GF17861-PA 21..246 36..260 573 47.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22028-PA 266 GG22028-PA 1..266 1..266 1242 88.3 Plus
Dere\GG22017-PA 273 GG22017-PA 37..265 36..264 728 60.9 Plus
Dere\GG16790-PA 288 GG16790-PA 49..281 36..265 604 49.8 Plus
Dere\GG16789-PA 264 GG16789-PA 8..258 8..260 598 46.5 Plus
Dere\GG16791-PA 267 GG16791-PA 27..257 37..264 553 46.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14062-PA 266 GH14062-PA 1..264 1..264 903 64 Plus
Dgri\GH14252-PA 282 GH14252-PA 1..267 3..259 602 43.4 Plus
Dgri\GH14064-PA 269 GH14064-PA 23..265 23..260 551 45.3 Plus
Dgri\GH14066-PA 271 GH14066-PA 40..269 36..263 550 46.2 Plus
Dgri\GH14253-PA 260 GH14253-PA 22..252 37..264 540 43.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31265-PA 266 CG31265-PA 1..266 1..266 1444 100 Plus
CG31269-PB 273 CG31269-PB 6..265 8..264 763 57.9 Plus
CG17475-PB 288 CG17475-PB 49..281 36..265 630 49.8 Plus
CG17475-PA 288 CG17475-PA 49..281 36..265 630 49.8 Plus
CG17477-PA 267 CG17477-PA 27..257 37..264 598 49.4 Plus
CG4053-PB 265 CG4053-PB 34..259 36..260 597 50 Plus
CG5255-PA 273 CG5255-PA 2..254 8..259 547 44.9 Plus
CG5246-PA 272 CG5246-PA 41..266 36..259 535 44.5 Plus
CG31267-PA 275 CG31267-PA 42..271 34..260 494 43 Plus
CG31266-PB 282 CG31266-PB 10..278 3..260 493 39.8 Plus
CG31954-PA 277 CG31954-PA 9..272 3..255 357 35.7 Plus
CG11911-PA 277 CG11911-PA 1..277 1..265 354 33 Plus
gammaTry-PA 253 CG30028-PA 29..251 35..256 348 36.3 Plus
deltaTry-PA 253 CG12351-PA 29..251 35..256 348 36.3 Plus
CG30031-PA 253 CG30031-PA 29..251 35..256 348 36.3 Plus
alphaTry-PA 256 CG18444-PA 29..251 35..256 348 36 Plus
CG30025-PA 253 CG30025-PA 29..249 35..254 347 36.2 Plus
epsilonTry-PA 256 CG18681-PA 15..249 25..254 345 35 Plus
CG1304-PA 260 CG1304-PA 12..255 7..256 343 34.9 Plus
Ser8-PA 260 CG4812-PA 1..253 1..254 341 36.3 Plus
CG17571-PB 258 CG17571-PB 29..251 35..254 336 34.1 Plus
CG17571-PA 258 CG17571-PA 29..251 35..254 336 34.1 Plus
betaTry-PB 253 CG18211-PB 29..249 35..254 330 34.6 Plus
betaTry-PA 253 CG18211-PA 29..249 35..254 330 34.6 Plus
Ser6-PA 259 CG2071-PA 25..254 30..255 326 35.6 Plus
thetaTry-PA 262 CG12385-PA 28..255 30..254 318 34.1 Plus
iotaTry-PA 252 CG7754-PA 25..245 34..254 315 36.2 Plus
Try29F-PD 267 CG9564-PD 40..263 35..256 315 33.6 Plus
Try29F-PC 267 CG9564-PC 40..263 35..256 315 33.6 Plus
CG12951-PA 265 CG12951-PA 7..259 4..256 307 33 Plus
CG16749-PA 265 CG16749-PA 24..258 31..255 302 34.2 Plus
CG7829-PA 253 CG7829-PA 27..250 36..259 296 31.7 Plus
CG8299-PA 260 CG8299-PA 3..255 4..257 293 32 Plus
CG10472-PA 290 CG10472-PA 44..282 34..257 289 35.8 Plus
zetaTry-PA 280 CG12387-PA 37..279 35..260 288 35.1 Plus
etaTry-PA 262 CG12386-PA 22..254 31..254 287 32.5 Plus
CG4386-PA 372 CG4386-PA 107..356 14..256 287 33.1 Plus
Sb-PB 787 CG4316-PB 535..782 28..254 285 31.5 Plus
Sb-PA 787 CG4316-PA 535..782 28..254 285 31.5 Plus
CG13430-PB 267 CG13430-PB 28..259 33..254 284 33 Plus
CG13430-PA 267 CG13430-PA 28..259 33..254 284 33 Plus
CG32808-PA 284 CG32808-PA 24..255 31..254 280 33.1 Plus
lambdaTry-PA 272 CG12350-PA 34..256 35..254 279 33.8 Plus
CG11192-PB 279 CG11192-PB 18..263 27..258 275 31.9 Plus
CG11912-PA 271 CG11912-PA 21..264 28..254 274 33.5 Plus
CG11836-PI 281 CG11836-PI 44..280 36..264 274 31.7 Plus
CG11836-PJ 333 CG11836-PJ 96..332 36..264 274 31.7 Plus
CG3916-PA 267 CG3916-PA 30..257 36..254 272 34.5 Plus
CG11836-PF 223 CG11836-PF 8..222 59..264 267 32.7 Plus
CG11836-PE 223 CG11836-PE 8..222 59..264 267 32.7 Plus
CG11836-PG 223 CG11836-PG 8..222 59..264 267 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24438-PA 269 GI24438-PA 1..267 1..264 917 63.3 Plus
Dmoj\GI23144-PA 284 GI23144-PA 4..278 2..265 575 42.4 Plus
Dmoj\GI24441-PA 272 GI24441-PA 42..262 36..255 563 48.6 Plus
Dmoj\GI23142-PA 269 GI23142-PA 24..262 22..259 554 44.8 Plus
Dmoj\GI23145-PA 265 GI23145-PA 26..256 37..264 552 44.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27272-PA 264 GL27272-PA 1..262 1..264 1120 77.7 Plus
Dper\GL27271-PA 271 GL27271-PA 1..263 3..264 709 51.7 Plus
Dper\GL27214-PA 286 GL27214-PA 2..279 3..265 627 47.3 Plus
Dper\GL27213-PA 266 GL27213-PA 35..260 36..260 555 46.5 Plus
Dper\GL27215-PA 268 GL27215-PA 18..259 27..264 541 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16134-PA 290 GA16134-PA 1..237 1..239 977 75.7 Plus
Dpse\GA16138-PA 271 GA16138-PA 1..263 3..264 705 51.7 Plus
Dpse\GA14522-PA 286 GA14522-PA 2..279 3..265 626 47.3 Plus
Dpse\GA17920-PA 266 GA17920-PA 35..260 36..260 557 46 Plus
Dpse\GA14523-PA 268 GA14523-PA 18..259 27..264 551 46.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15210-PA 266 GM15210-PA 1..266 1..266 1288 93.2 Plus
Dsec\GM15383-PA 289 GM15383-PA 50..282 36..265 614 50.2 Plus
Dsec\GM15209-PA 239 GM15209-PA 37..231 36..264 587 53.9 Plus
Dsec\GM15382-PA 264 GM15382-PA 33..258 36..260 583 49.6 Plus
Dsec\GM15384-PA 267 GM15384-PA 27..257 37..264 571 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19141-PA 266 GD19141-PA 1..266 1..266 1321 95.5 Plus
Dsim\GD19140-PA 274 GD19140-PA 23..266 24..264 741 59.2 Plus
Dsim\GD20249-PA 288 GD20249-PA 10..279 8..265 610 46.3 Plus
Dsim\GD20248-PA 264 GD20248-PA 33..258 36..260 584 50 Plus
Dsim\GD20250-PA 267 GD20250-PA 27..257 37..264 571 48.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10713-PA 268 GJ10713-PA 30..266 31..264 913 71.3 Plus
Dvir\GJ10446-PA 290 GJ10446-PA 47..270 32..255 563 46.9 Plus
Dvir\GJ10717-PA 272 GJ10717-PA 42..270 36..263 555 46.5 Plus
Dvir\GJ10718-PA 280 GJ10718-PA 24..257 29..259 547 46.2 Plus
Dvir\GJ10447-PA 268 GJ10447-PA 29..259 37..264 544 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12196-PA 282 GK12196-PA 1..260 1..263 1022 71.7 Plus
Dwil\GK12195-PA 272 GK12195-PA 28..264 26..264 735 58.2 Plus
Dwil\GK10883-PA 268 GK10883-PA 37..261 36..259 592 49.8 Plus
Dwil\GK10884-PA 290 GK10884-PA 32..274 18..260 586 46.7 Plus
Dwil\GK10885-PA 274 GK10885-PA 35..265 37..264 547 44.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24614-PA 266 GE24614-PA 1..266 1..266 1270 91.4 Plus
Dyak\GE24613-PA 274 GE24613-PA 7..266 3..264 742 56.3 Plus
Dyak\GE26105-PA 296 GE26105-PA 49..281 36..265 613 50.6 Plus
Dyak\GE26104-PA 264 GE26104-PA 33..258 36..260 583 49.1 Plus
Dyak\GE26106-PA 267 GE26106-PA 27..257 37..264 550 45.5 Plus