Clone RE04768 Report

Search the DGRC for RE04768

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:47
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG10440-RA
Protein status:RE04768.pep: gold
Preliminary Size:1416
Sequenced Size:2364

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10440 2002-01-01 Sim4 clustering to Release 2
CG10440 2002-05-31 Blastp of sequenced clone
CG10440 2003-01-01 Sim4 clustering to Release 3
CG10440 2008-04-29 Release 5.5 accounting
CG10440 2008-08-15 Release 5.9 accounting
CG10440 2008-12-18 5.12 accounting

Clone Sequence Records

RE04768.complete Sequence

2364 bp (2364 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118359

> RE04768.complete
AGTATTCGAGCAACTCTCGACGCGAATGCAAGTGAGGTAAATTGCCAGCG
CTCAAAAGTAGGCAACACTTAGGTCTAACGGTGAACGGTGAACAGCGAAC
GGTTAACGTTTAACGGTGTGCGTTGTGTACGGCAAGCGGAAACGGAAGTA
AACACTCGTTGGCGCGCGCTCATTTGATTGAATTTGAAAGGGTTCAACCG
AAAGCGACTAGCGATCAGCAGATCGAAGCACACTGAGAATATCGAAGGTC
ACTGAAGATCGGACAAGACGAATATCGTTTATCTACGCGCGCGTTGTATT
AAAAAAGAGTTAAAGTGCATTTCCTAAATATACCAACCTTTTTAACTCCG
TTTGTTGCATTGGATCAACGATCACCGTTGACGGTGGATTCCTCCTGCCC
CAAACGGAAAAAATGCGATATGGACCGAGAGCGCGAAAGAGATGTCAAGG
CCCTGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGC
GATATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTC
CTCTTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGG
GCTTGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCA
TCGGCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGG
GATTCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCG
ACGTGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTAC
CCGGAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCT
GGACTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCC
GCCACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGAT
TTTCCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGA
GCCGATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATG
GCAACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACG
AGCCCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCT
GCACATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGG
CTCTGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGT
CGCAGCGGAGTGTCCTGGAACCAGGGCGACTGGGGGCAAATCATTCGCTT
CCCCCTCAACGGCTACTGCAAGCTGAACTCGGTGCAGGTGCTCACCCGAC
TCCTCAACGCCGGCTTCACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTC
TCCGAGTATCTGCTGGCGCGACGCGTTCCAATGTGATAGGCTCTGGGTAG
GGATTCCCCAGCTCCCCAAGAAGCTGCAGATGTGGCCCTGATTCCGTCGG
CTTCTGTGGCTTCTGTTTCCGGCTCCGGTTCGGACTCGGGTTCGGGTTCG
GCATCGGGCTCTTTGCGACGCGGGCGTCTGATCCATGTGCGTTGCAGGCG
CTAATTGATCTGGGTTAGGTGACCCAGAATCGCAGGTGGGGAGAGTGGTC
TATGAACAATTCCAAGTGATACAATGTACTGAGAAGGGCAAATGAAAAAT
CAAGTGTAACGCCGAATTGTTTATATATCTAACACACTAAAACTCGATCC
AACACCGTTTTGGGGACTGCGCATTGCTGCTCTGAGCAGTAAAATACATA
ATTTAGAAATACTTGGACACCGTTCGGTGAGGATGCAAGTTCTGAATCTG
AATCCAAATGTTATTTAATGTTTATCAATTAAGTTTGCTGGCACGGACAC
TGAACGCAAACACGCTCGTGTGTATTATTAAGCATTTACAGAGCCAAGAG
CCCAGCACTGATTTTGTTTTTTAGCCTTGATTTTAAGTCGATATTGTTTT
CTCTAAGTGTACCACCTAATGCTAAAGACCCTAAGTTGTTTCATTAAATC
AAGTTGGCCAGGGATATTAGCTGGCTTAAATTATTGTAACACACACGGAA
AACTATGGTAGTATCAACTCACAGCGAAAATAGTTTTGTAGTACTTAATT
GATGTAATTGAACCTTTATGAATGTAAACTATGGGATAACTTTTTCAATA
TATACGATCCGACGTCTAAATAGTCTACACCAATTCAAATACAATTACAT
GCAAATATAGATATATTTAACGAAATACAGTTTGCGACCACGCCCTCTAT
AGAACAACCACTCAATTGAATATTTAAATAAAGAAAAAACATACGTGCAA
AAAAAAAAAAAAAA

RE04768.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440.c 2672 CG10440.c 322..2672 1..2351 11740 99.9 Plus
CG10440-RA 2422 CG10440-RA 72..2422 1..2351 11740 99.9 Plus
CG10440.a 2108 CG10440.a 104..2107 344..2347 10020 100 Plus
CG10440.a 2108 CG10440.a 68..103 1..36 180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17446670..17448014 2347..1003 6695 99.9 Minus
chr2R 21145070 chr2R 17448211..17448701 1002..512 2425 99.6 Minus
chr2R 21145070 chr2R 17457522..17457864 343..1 1655 98.8 Minus
chr2R 21145070 chr2R 17448961..17449069 514..406 545 100 Minus
chr2R 21145070 chr2R 17457175..17457238 407..344 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21560243..21561591 2351..1003 6730 99.9 Minus
2R 25286936 2R 21561794..21562284 1002..512 2455 100 Minus
2R 25286936 2R 21571110..21571452 343..1 1715 100 Minus
2R 25286936 2R 21562544..21562652 514..406 545 100 Minus
2R 25286936 2R 21570761..21570824 407..344 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21561442..21562790 2351..1003 6730 99.9 Minus
2R 25260384 2R 21562993..21563483 1002..512 2455 100 Minus
2R 25260384 2R 21572309..21572651 343..1 1715 100 Minus
2R 25260384 2R 21563743..21563851 514..406 545 100 Minus
2R 25260384 2R 21571960..21572023 407..344 320 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:46:01 has no hits.

RE04768.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:46:39 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17446669..17448014 1003..2348 99 <- Minus
chr2R 17448211..17448698 515..1002 99 <- Minus
chr2R 17448961..17449068 407..514 100 <- Minus
chr2R 17457176..17457238 344..406 100 <- Minus
chr2R 17457522..17457864 1..343 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:28:40 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..1017 420..1436 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:17 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..1017 420..1436 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:18 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RB 12..1104 344..1436 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:17 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..1017 420..1436 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:12 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RB 12..1104 344..1436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:28:39 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..2347 1..2348 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:16 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..2347 1..2348 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:18 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 3..2349 1..2348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:18 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..2347 1..2348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:12 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 3..2349 1..2348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:39 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21560246..21561591 1003..2348 99 <- Minus
2R 21561794..21562281 515..1002 100 <- Minus
2R 21562544..21562651 407..514 100 <- Minus
2R 21570762..21570824 344..406 100 <- Minus
2R 21571110..21571452 1..343 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:39 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21560246..21561591 1003..2348 99 <- Minus
2R 21561794..21562281 515..1002 100 <- Minus
2R 21562544..21562651 407..514 100 <- Minus
2R 21570762..21570824 344..406 100 <- Minus
2R 21571110..21571452 1..343 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:46:39 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21560246..21561591 1003..2348 99 <- Minus
2R 21561794..21562281 515..1002 100 <- Minus
2R 21562544..21562651 407..514 100 <- Minus
2R 21570762..21570824 344..406 100 <- Minus
2R 21571110..21571452 1..343 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:18 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17450049..17450156 407..514 100 <- Minus
arm_2R 17458267..17458329 344..406 100 <- Minus
arm_2R 17447751..17449096 1003..2348 99 <- Minus
arm_2R 17449299..17449786 515..1002 100 <- Minus
arm_2R 17458615..17458957 1..343 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:07 Download gff for RE04768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21572309..21572651 1..343 100   Minus
2R 21561445..21562790 1003..2348 99 <- Minus
2R 21562993..21563480 515..1002 100 <- Minus
2R 21563743..21563850 407..514 100 <- Minus
2R 21571961..21572023 344..406 100 <- Minus

RE04768.hyp Sequence

Translation from 419 to 1435

> RE04768.hyp
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPM*

RE04768.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 338 CG10440-PA 1..338 1..338 1727 100 Plus
CG10440-PB 367 CG10440-PB 30..367 1..338 1727 100 Plus
CG10830-PA 228 CG10830-PA 5..104 108..207 172 38.6 Plus

RE04768.pep Sequence

Translation from 419 to 1435

> RE04768.pep
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPM*

RE04768.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12090-PA 343 GF12090-PA 1..343 1..338 1763 97.4 Plus
Dana\GF17008-PA 227 GF17008-PA 5..100 108..207 181 41 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20766-PA 338 GG20766-PA 1..338 1..338 1788 100 Plus
Dere\GG15048-PA 228 GG15048-PA 5..104 108..207 177 39.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20052-PA 350 GH20052-PA 1..350 1..338 1580 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
twz-PB 367 CG10440-PB 30..367 1..338 1727 100 Plus
twz-PA 338 CG10440-PA 1..338 1..338 1727 100 Plus
Ktl-PB 228 CG10830-PB 5..104 108..207 172 38.6 Plus
Ktl-PA 228 CG10830-PA 5..104 108..207 172 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20461-PA 350 GI20461-PA 1..350 1..338 1584 90.6 Plus
Dmoj\GI21987-PA 230 GI21987-PA 5..103 108..207 176 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17486-PA 342 GL17486-PA 1..342 1..338 1751 96.5 Plus
Dper\GL23251-PA 228 GL23251-PA 5..104 108..207 155 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10319-PA 342 GA10319-PA 1..342 1..338 1751 96.5 Plus
Dpse\GA10583-PA 228 GA10583-PA 5..104 108..207 155 35.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15711-PA 338 GM15711-PA 1..338 1..338 1788 100 Plus
Dsec\GM23149-PA 228 GM23149-PA 5..101 108..207 169 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25187-PA 338 GD25187-PA 1..338 1..338 1788 100 Plus
Dsim\GD20024-PA 228 GD20024-PA 5..101 108..207 169 39.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22311-PA 352 GJ22311-PA 1..352 1..338 1582 89.8 Plus
Dvir\GJ14346-PA 230 GJ14346-PA 5..103 108..207 164 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22258-PA 338 GK22258-PA 1..338 1..338 1706 95.6 Plus
Dwil\GK22689-PA 230 GK22689-PA 5..106 108..207 163 35.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13699-PA 338 GE13699-PA 1..338 1..338 1788 100 Plus
Dyak\GE25029-PA 228 GE25029-PA 5..104 108..207 176 38.6 Plus