Clone RE04882 Report

Search the DGRC for RE04882

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:48
Well:82
Vector:pFlc-1
Associated Gene/TranscriptCcp84Ae-RA
Protein status:RE04882.pep: gold
Preliminary Size:627
Sequenced Size:775

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1330 2001-12-17 Blastp of sequenced clone
CG1330 2002-01-01 Sim4 clustering to Release 2
CG1330 2003-01-01 Sim4 clustering to Release 3
Ccp84Ae 2008-04-29 Release 5.5 accounting
Ccp84Ae 2008-08-15 Release 5.9 accounting
Ccp84Ae 2008-12-18 5.12 accounting

Clone Sequence Records

RE04882.complete Sequence

775 bp (775 high quality bases) assembled on 2001-12-17

GenBank Submission: AY070951

> RE04882.complete
TGATTCAGTGTTTGGCTTCGGCTCAAGACAGCAGTTAATCAAATTCATCC
AACTACAATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGTTCGCCGTGG
CCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTGGCTTCTGCT
CCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGTTGATCCGCA
TCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTTCCGGCGACA
ACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGCGGCGAGTAC
TCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTATACCGCCGA
TTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCCTTGCCGCTG
TTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTGGTCAAGGCC
GCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACCAGCTCCCAT
TGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCAAGTCCGCTC
CCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTGGCGGTGGCT
GCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCCTCTGCGGTA
CACCGCCCCTGCGTACACCGTCGCCCAATTGTAAACACCCATGCGACCGC
TGTTATTTTGAACCCTTGTTTTGTTTCTATGATAATAAAATGTGATTTGA
TATGTTAAAAAAAAAAAAAAAAAAA

RE04882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 792 Ccp84Ae-RA 39..792 3..756 3770 100 Plus
Ccp84Ad-RA 862 Ccp84Ad-RA 357..556 193..392 490 83 Plus
Ccp84Ab-RA 853 Ccp84Ab-RA 266..426 232..392 400 83.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2516681..2517369 756..68 3415 99.7 Minus
chr3R 27901430 chr3R 2518821..2519020 193..392 490 83 Plus
chr3R 27901430 chr3R 2528167..2528327 392..232 400 83.2 Minus
chr3R 27901430 chr3R 2530200..2530360 232..392 385 82.6 Plus
chrX 22417052 chrX 5697376..5697561 193..378 375 80.1 Plus
chr3R 27901430 chr3R 2517486..2517552 69..3 335 100 Minus
chr3R 27901430 chr3R 2512909..2513108 193..392 325 77.5 Plus
chr3R 27901430 chr3R 2515569..2515754 378..193 315 78 Minus
chr2L 23010047 chr2L 10054287..10054374 313..400 185 80.7 Plus
chr2L 23010047 chr2L 11943862..11943964 219..321 185 78.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:27:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690885..6691575 758..68 3455 100 Minus
3R 32079331 3R 6693027..6693226 193..392 490 83 Plus
3R 32079331 3R 6702376..6702536 392..232 400 83.2 Minus
3R 32079331 3R 6704409..6704569 232..392 385 82.6 Plus
X 23542271 X 5804968..5805153 193..378 375 80.1 Plus
3R 32079331 3R 6691692..6691758 69..3 335 100 Minus
3R 32079331 3R 6687097..6687296 193..392 325 77.5 Plus
3R 32079331 3R 6689775..6689960 378..193 315 78 Minus
2L 23513712 2L 10055357..10055444 313..400 185 80.7 Plus
2L 23513712 2L 11945216..11945318 219..321 185 78.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6431716..6432406 758..68 3455 100 Minus
3R 31820162 3R 6433858..6434057 193..392 490 83 Plus
3R 31820162 3R 6443207..6443367 392..232 400 83.2 Minus
3R 31820162 3R 6445240..6445400 232..392 385 82.6 Plus
X 23527363 X 5813066..5813251 193..378 375 80.1 Plus
3R 31820162 3R 6432523..6432589 69..3 335 100 Minus
3R 31820162 3R 6430653..6430791 331..193 290 80.5 Minus
3R 31820162 3R 6428074..6428127 339..392 165 87 Plus
3R 31820162 3R 6428006..6428057 271..322 140 84.6 Plus
Blast to na_te.dros performed on 2019-03-15 17:35:39 has no hits.

RE04882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:36:56 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2516681..2517367 70..756 99 <- Minus
chr3R 2517486..2517552 1..69 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:44 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 58..684 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:45 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 58..684 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:40:44 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 58..684 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:27 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 58..684 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:53 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 58..684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:27 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..751 3..753 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:45 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..754 3..756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:40:44 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..754 3..756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:27 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..751 3..753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:53 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..754 3..756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:36:56 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6690887..6691573 70..756 100 <- Minus
3R 6691692..6691758 1..69 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:36:56 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6690887..6691573 70..756 100 <- Minus
3R 6691692..6691758 1..69 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:36:56 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6690887..6691573 70..756 100 <- Minus
3R 6691692..6691758 1..69 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:40:44 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516609..2517295 70..756 100 <- Minus
arm_3R 2517414..2517480 1..69 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:43 Download gff for RE04882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6431718..6432404 70..756 100 <- Minus
3R 6432523..6432589 1..69 97   Minus

RE04882.hyp Sequence

Translation from 3 to 683

> RE04882.hyp
FSVWLRLKTAVNQIHPTTMAAKIVIALALFAVAHGAVLRTAAPVAVASAP
VPVLAKTVELEEVDPHPQYTYSYDVQDTLSGDNKGHVEERDGDVVRGEYS
LIDADGFKRTVTYTADSINGFNAVVRREPLAAVVAAEPLLKVAAPLVKAA
PVAPIAPVALAAPAPIVRSAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAA
PAPVLRTAAYATPLRYTAPAYTVAQL*

RE04882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-PA 208 CG1330-PA 1..208 19..226 1020 100 Plus
Ccp84Ab-PA 221 CG1252-PA 1..216 19..220 436 53.3 Plus
Ccp84Ad-PA 199 CG2341-PA 1..194 19..220 427 52.1 Plus
Ccp84Ag-PA 191 CG2342-PA 1..181 19..225 426 51.7 Plus
Ccp84Aa-PA 205 CG2360-PA 1..200 19..220 423 52.1 Plus

RE04882.pep Sequence

Translation from 57 to 683

> RE04882.pep
MAAKIVIALALFAVAHGAVLRTAAPVAVASAPVPVLAKTVELEEVDPHPQ
YTYSYDVQDTLSGDNKGHVEERDGDVVRGEYSLIDADGFKRTVTYTADSI
NGFNAVVRREPLAAVVAAEPLLKVAAPLVKAAPVAPIAPVALAAPAPIVR
SAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAAPAPVLRTAAYATPLRYTA
PAYTVAQL*

RE04882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17801-PA 217 GF17801-PA 1..217 1..208 728 81.7 Plus
Dana\GF17186-PA 221 GF17186-PA 57..193 34..161 353 61.9 Plus
Dana\GF17799-PA 210 GF17799-PA 1..175 1..155 344 53.1 Plus
Dana\GF17187-PA 217 GF17187-PA 1..174 1..154 340 52.9 Plus
Dana\GF21210-PA 141 GF21210-PA 36..133 20..120 335 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10302-PA 211 GG10302-PA 1..211 1..208 672 91.9 Plus
Dere\GG13631-PA 199 GG13631-PA 47..123 34..112 349 81 Plus
Dere\GG10280-PA 230 GG10280-PA 1..123 1..112 341 59.3 Plus
Dere\GG13642-PA 220 GG13642-PA 1..123 1..112 339 59.3 Plus
Dere\GG18788-PA 145 GG18788-PA 49..139 34..140 338 66.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19488-PA 195 GH19488-PA 1..195 1..208 606 73.1 Plus
Dgri\GH19485-PA 227 GH19485-PA 1..199 1..204 354 52.1 Plus
Dgri\GH18129-PA 227 GH18129-PA 1..186 1..152 354 52.7 Plus
Dgri\GH18128-PA 166 GH18128-PA 1..131 1..115 347 59.4 Plus
Dgri\GH19487-PA 201 GH19487-PA 67..136 43..112 335 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-PA 208 CG1330-PA 1..208 1..208 1020 100 Plus
Ccp84Ab-PA 221 CG1252-PA 1..216 1..202 436 53.3 Plus
Ccp84Ad-PA 199 CG2341-PA 1..194 1..202 427 52.1 Plus
Ccp84Ag-PA 191 CG2342-PA 1..181 1..207 426 51.7 Plus
Ccp84Aa-PA 205 CG2360-PA 1..200 1..202 423 52.1 Plus
Cpr5C-PA 145 CG4052-PA 1..142 1..143 366 55.8 Plus
Ccp84Af-PA 151 CG1331-PA 1..146 1..138 338 52.6 Plus
Cpr64Ad-PB 247 CG1259-PB 90..246 2..161 318 46.7 Plus
Ccp84Ac-PA 217 CG1327-PA 60..165 46..147 315 62.3 Plus
Cpr31A-PA 340 CG33302-PA 95..231 1..148 300 50 Plus
Cpr92A-PA 245 CG6240-PA 48..202 32..196 294 45.8 Plus
Cpr64Aa-PA 192 CG15006-PA 1..157 1..147 292 47.5 Plus
Edg84A-PA 188 CG2345-PA 19..176 34..192 290 42.3 Plus
Cpr64Ab-PA 120 CG15007-PA 8..119 6..129 287 53.6 Plus
CG34461-PB 138 CG34461-PB 2..134 4..134 248 44.1 Plus
CG34461-PA 138 CG34461-PA 2..134 4..134 248 44.1 Plus
Cpr30F-PA 146 CG31876-PA 5..132 9..145 248 41.3 Plus
Cpr64Ac-PA 188 CG15008-PA 52..167 9..126 240 49.2 Plus
Cpr23B-PA 302 CG2973-PA 150..233 44..127 237 57.1 Plus
Cpr62Bb-PC 194 CG13935-PC 32..155 48..160 233 47.6 Plus
Cpr62Bb-PB 194 CG13935-PB 32..155 48..160 233 47.6 Plus
Cpr62Bb-PA 194 CG13935-PA 32..155 48..160 233 47.6 Plus
Cpr62Bc-PB 180 CG1919-PB 5..152 4..146 231 44.6 Plus
Cpr62Bc-PA 180 CG1919-PA 5..152 4..146 231 44.6 Plus
Crys-PB 477 CG16963-PB 69..138 43..112 222 54.3 Plus
Crys-PA 477 CG16963-PA 69..138 43..112 222 54.3 Plus
Cpr76Bd-PD 1228 CG9299-PD 1113..1209 20..107 197 50.5 Plus
Cpr76Bd-PB 1228 CG9299-PB 1113..1209 20..107 197 50.5 Plus
Cpr76Bd-PC 1231 CG9299-PC 1116..1212 20..107 197 50.5 Plus
Cpr30B-PA 153 CG3818-PA 13..133 36..150 186 40.2 Plus
CG42367-PC 103 CG42367-PC 3..101 14..113 182 40 Plus
Cpr66Cb-PA 162 CG7076-PA 79..147 43..109 179 53.6 Plus
Cpr76Bb-PA 198 CG9290-PA 79..144 46..109 178 53 Plus
Cpr35B-PA 218 CG3474-PA 1..133 1..112 176 39.1 Plus
Cpr76Bc-PD 424 CG9295-PD 33..113 31..108 176 46.9 Plus
Cpr76Bc-PC 424 CG9295-PC 33..113 31..108 176 46.9 Plus
Cpr76Ba-PA 204 CG9283-PA 92..157 43..108 175 53 Plus
Cpr66D-PA 270 CG32029-PA 148..223 41..116 164 46.1 Plus
CG13044-PA 155 CG13044-PA 26..140 106..202 143 37.4 Plus
CG13044-PA 155 CG13044-PA 56..155 107..203 141 41.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23758-PA 189 GI23758-PA 1..189 1..208 615 70.2 Plus
Dmoj\GI23843-PA 227 GI23843-PA 1..113 1..112 362 65.8 Plus
Dmoj\GI23757-PA 176 GI23757-PA 46..170 31..153 349 59.7 Plus
Dmoj\GI23842-PA 176 GI23842-PA 46..170 31..153 349 59.7 Plus
Dmoj\GI23755-PA 191 GI23755-PA 1..162 1..161 349 58.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22051-PA 217 GL22051-PA 1..217 1..208 616 78 Plus
Dper\GL21772-PA 223 GL21772-PA 33..190 43..202 348 55.5 Plus
Dper\GL21770-PA 213 GL21770-PA 47..126 34..115 342 76.8 Plus
Dper\GL21769-PA 198 GL21769-PA 1..103 14..112 315 62.1 Plus
Dper\GL22049-PA 231 GL22049-PA 66..135 46..115 307 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12183-PB 217 GA12183-PB 1..217 1..208 616 78 Plus
Dpse\GA26397-PA 242 GA26397-PA 52..227 43..202 366 54 Plus
Dpse\GA26395-PA 213 GA26395-PA 47..126 34..115 341 76.8 Plus
Dpse\GA27359-PA 211 GA27359-PA 1..124 1..115 327 58.1 Plus
Dpse\GA15354-PA 198 GA15354-PA 1..103 14..112 315 62.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10534-PA 208 GM10534-PA 1..208 1..208 969 96.6 Plus
Dsec\GM10911-PA 199 GM10911-PA 47..123 34..112 348 81 Plus
Dsec\GM10912-PA 211 GM10912-PA 1..123 1..112 346 60.2 Plus
Dsec\GM12439-PA 145 GM12439-PA 49..139 34..140 344 65.4 Plus
Dsec\GM10535-PA 151 GM10535-PA 1..126 1..115 316 56.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19530-PA 205 GD19530-PA 1..205 1..208 953 96.2 Plus
Dsim\GD19526-PA 236 GD19526-PA 1..219 1..206 345 47.8 Plus
Dsim\GD16755-PA 145 GD16755-PA 49..139 34..140 340 67.3 Plus
Dsim\GD19531-PA 151 GD19531-PA 1..126 1..115 316 56.6 Plus
Dsim\GD19528-PA 217 GD19528-PA 60..129 46..115 311 77.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23942-PA 183 GJ23942-PA 1..183 1..208 642 72.1 Plus
Dvir\GJ23302-PA 256 GJ23302-PA 1..118 1..112 355 64.4 Plus
Dvir\GJ23301-PA 175 GJ23301-PA 46..146 31..135 354 67.6 Plus
Dvir\GJ23938-PA 233 GJ23938-PA 1..118 1..112 348 63.6 Plus
Dvir\GJ23940-PA 200 GJ23940-PA 46..127 31..112 339 75.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10834-PA 219 GK10834-PA 56..132 34..112 346 82.3 Plus
Dwil\GK12248-PA 219 GK12248-PA 56..132 34..112 346 82.3 Plus
Dwil\GK10832-PA 179 GK10832-PA 1..165 1..155 342 54.3 Plus
Dwil\GK12249-PA 228 GK12249-PA 1..192 1..189 342 52.2 Plus
Dwil\GK12247-PA 194 GK12247-PA 1..103 14..112 312 60.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25837-PA 202 GE25837-PA 1..202 1..208 696 92.3 Plus
Dyak\GE25835-PA 212 GE25835-PA 1..115 1..112 370 67.8 Plus
Dyak\GE16433-PA 154 GE16433-PA 46..135 17..116 350 71 Plus
Dyak\GE24880-PA 181 GE24880-PA 47..123 34..112 346 81 Plus
Dyak\GE24881-PA 228 GE24881-PA 1..123 1..112 344 60.2 Plus