Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE04933.complete Sequence
3126 bp (3126 high quality bases) assembled on 2004-07-15
GenBank Submission: BT015238
> RE04933.complete
ATTTAGGAAAATATCGCCAACATAATTCGATAAATAATAAATGTCTTGAA
ATTGACTTCCTTTAAAGTGTAATATGGATATTGAATTACCTTATCTTGCT
GAGTATGCAAGAACTGGACGAGCCACTTGCAAAGGATGTAAAAGTACTAT
ATCTAAAGATACTCTTCGGATTGCTGTCATGGTTCAATCTGCATTTCATG
ATGCCAAAGTTCCGAATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAG
CGTCCCAGCTCAGTAGGAGACATACAAAACATTGGAAATCTCCGATTTGC
CGATCAAAAGGAATTAACGGATCTTGTGGAAAATATACAAGAAGTTATAA
GCGCACAATTAGGAAAAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAA
GACTTTGGGATTGAATATGCAAAATCTAGTCGATCGACGTGTCGTGGATG
TGAACAAAAAATAAACAAGGATCTAGTTCGCTTACGTAAAACTGTTTATG
ATACTGAAGTTGGTATGAAGTACGGAGGCCAACCTTTGTGGCATCATTTG
GAATGCTTCGCCCAATTGCGCTCTGAGCTTGGCTGGTTTGCGTCAGGTGA
AGATATGCCAGGATTTCAGAGCTTAGCAGATGATGATCAAGCGAAAGTTA
AAAACGCCATACCACCAATAAAATCTGAAGAACTACCAGATACAAAAAGA
GCTAAGATGGAATTATCAGATACAAATGAAGAAGGAGAAAAGAAACAACG
CTTAAAAGATCAAAATGATGCCTACTTCAGGTTTCGCGATGACATTAAAA
ATAAAATGAAGAAGAAAGACATTGATATACTTCTAAAGTTTAATAATCAA
CAACCTGTAACTGGTGACACAGAAAAGTTATTTGATCAAACTGCCGATTT
ACTGACATTCGGAGCTATTGAATCATGTTCTGAATGCAACAGCTGTCAGT
TTATTGTTAATAAATCTGGATATATATGTAATGGAAATCATTCTGAGTGG
ACCAAATGTAACAAGCTGCTAAAAGAGCCAACAAGATCGGCATGCATAGT
GCCAAAAGAACTTAAAGCATTATATAATTTTTTGAATACCGTGAAAGAAA
TTCCATCTACACGGATCTTTAATAACTTTCCTCCCAATAAAAGTACCTTT
TCTAGAAGTCTTTTGAAAACGAATAAAAACAATGATGTTTTGGTTAGGCC
AACAATACCTCGTATAAGTCCGCCATTATACAATTTAAAGTTTTCAATTA
TAGGCTTAAAGAACCAGCATAAAGAGCTAAGAAAGCGAATAGAAAATTTG
GGCGGTAAATTTGAAGTTAAAATATCGGAAAACACGATAGCAATAATATC
AACAGAATTAGAAATACAAAAAAAATCCACCCGTATGAAGTTTGCAGAAG
AGCTCGGAATTCATATTGTGCCCATTGAATTTTTAGATTTTGTTGAAGCC
GATACAGAAGGAGCTATTAAATATATAAATAGCACATGTATTTGTAGTTG
GGGAACAGATCCAAAATCCAGAATTCCAAAGGAAACAACAAAAAGTTTAA
ATTCGAACAGTATATATACAAAATCCATGCCAGTATCACGGACATTTAAA
GTAAAAGATGGCCTAGCTGTTGATCCGGACAGTGGGCTCGAGGACATCGC
CCATGTTTACGTGGACAGTAACAATAAATACAGTGTTGTTCTTGGCTTAA
CTGACATTCAGAGAAATAAGAACTCCTACTACAAAGTTCAGCTTTTAAAA
GCGGATAAAAAGGAGAAATATTGGATTTTTCGTTCATGGGGTCGAATTGG
AACAAATATTGGAAACTCAAAACTTGAAGAGTTCGACACGAGCGAGTCTG
CAAAAAGAAATTTTAAAGAAATATATGCAGATAAAACTGGAAATGAATAC
GAGCAACGAGATAACTTTGTTAAAAGAACAGGTCGAATGTACCCAATCGA
AATTCAATATGATGATGACCAAAAGTTGGTAAAACACGAAAGCCATTTCT
TTACTTCCAAATTAGAGATTTCTGTGCAAAATTTAATAAAGCTGATTTTT
GATATTGACTCAATGAATAAAACATTGATGGAATTCCATATCGACATGGA
TAAAATGCCGCTGGGCAAGCTCAGTGCTCATCAAATCCAATCTGCTTACA
GAGTAGTGAAGGAAATTTATAATGTACTAGAATGTGGTTCCAATACTGCA
AAACTTATTGATGCAACAAATAGGTTTTATACGTTAATTCCTCATAATTT
TGGAGTTCAATTACCAACATTAATTGAAACACATCAACAAATTGAAGATT
TGCGACAAATGCTTGATTCATTAGCTGAGATAGAGGTTGCGTACAGTATA
ATCAAAAGCGAAGATGTATCTGATGCTTGTAATCCTTTAGATAATCATTA
CGCACAGATTAAAACTCAGTTGGTGGCATTAGACAAAAATAGTGAAGAAT
TTTCGATTCTTAGCCAGTACGTAAAAAACACTCATGCATCTACCCACAAA
TCTTATGATTTAAAAATTGTTGATGTATTTAAAGTATCTCGCCAAGGAGA
AGCAAGGCGCTTTAAACCATTTAAGAAGCTACATAACAGAAAATTATTAT
GGCACGGATCACGTTTAACTAATTTTGTTGGTATATTATCGCATGGTTTA
AGAATTGCTCCCCCAGAAGCGCCACCAACAGGTTATATGTTCGGAAAAGG
CATTTATTTTGCGGATATGGTTTCAAAATCCGCAAATTATTGTTGCACAA
GTCAACAAAACTCTACTGGATTAATGCTTCTATCTGAAGTTGCTTTGGGC
GATATGATGGAATGCACTTCAGCGAAATACATTAATAAACTATCAAATAA
TAAACATAGTTGTTTCGGTCGTGGTCGCACCATGCCAGATCCTACTAAGA
GCTATATAAGAAGTGATGGGGTTGAAATTCCTTACGGAGAAACCATTACT
GACGAACATTTAAAGTCATCGTTATTATATAACGAGTATATAGTATATGA
TGTTGCGCAGGTCAATATTCAATATTTGTTTCGTATGGAATTCAAGTATT
CTTATTAAATGCCTTAAATTATATTGAGTGATATTGATATTAATAAATTG
GAATTATTCTAAAAAAAAAAAAAAAA
RE04933.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Parp-RB | 3224 | Parp-RB | 11..3126 | 1..3116 | 15565 | 99.9 | Plus |
Parp.c | 3109 | Parp.c | 4..3107 | 1..3108 | 15455 | 99.8 | Plus |
Parp.a | 3430 | Parp.a | 508..3428 | 188..3108 | 14605 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3RHet | 2517486 | chr3RHet | 2025468..2026808 | 1768..3108 | 6705 | 100 | Plus |
chr3RHet | 2517486 | chr3RHet | 2018682..2019253 | 1196..1767 | 2860 | 100 | Plus |
chr3RHet | 2517486 | chr3RHet | 1964211..1964745 | 664..1198 | 2675 | 100 | Plus |
chr3RHet | 2517486 | chr3RHet | 1936941..1937275 | 329..663 | 1675 | 100 | Plus |
chr3RHet | 2517486 | chr3RHet | 1935203..1935389 | 1..187 | 935 | 100 | Plus |
chr3RHet | 2517486 | chr3RHet | 1936745..1936886 | 188..329 | 710 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 3461345..3462693 | 3116..1768 | 6730 | 99.9 | Minus |
3R | 32079331 | 3R | 3468909..3469480 | 1767..1196 | 2860 | 100 | Minus |
3R | 32079331 | 3R | 3523413..3523947 | 1198..664 | 2675 | 100 | Minus |
3R | 32079331 | 3R | 3584980..3585314 | 663..329 | 1675 | 100 | Minus |
3R | 32079331 | 3R | 3586866..3587052 | 187..1 | 935 | 100 | Minus |
3R | 32079331 | 3R | 3585369..3585510 | 329..188 | 710 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 3122783..3124131 | 3116..1768 | 6730 | 99.9 | Minus |
3R | 31820162 | 3R | 3130347..3130918 | 1767..1196 | 2860 | 100 | Minus |
3R | 31820162 | 3R | 3184851..3185385 | 1198..664 | 2675 | 100 | Minus |
3R | 31820162 | 3R | 3246418..3246752 | 663..329 | 1675 | 100 | Minus |
3R | 31820162 | 3R | 3248304..3248490 | 187..1 | 935 | 100 | Minus |
3R | 31820162 | 3R | 3246807..3246948 | 329..188 | 710 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 11:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 6486..6623 | 635..770 | 126 | 58.6 | Plus |
RE04933.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:51:10 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3RHet | 1935203..1935389 | 1..187 | 100 | -> | Plus |
chr3RHet | 1936745..1936886 | 188..329 | 100 | -> | Plus |
chr3RHet | 1936942..1937275 | 330..663 | 100 | -> | Plus |
chr3RHet | 1964211..1964744 | 664..1197 | 100 | -> | Plus |
chr3RHet | 2018684..2019253 | 1198..1767 | 100 | -> | Plus |
chr3RHet | 2025468..2026809 | 1768..3110 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:39:45 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RA | 1..2985 | 74..3058 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:20 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 1..2985 | 74..3058 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:22 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 1..2985 | 74..3058 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:15 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RA | 1..2985 | 74..3058 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:43:12 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 1..2985 | 74..3058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:39:45 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RA | 426..3536 | 1..3110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:20 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 4..3112 | 1..3110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:22 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 4..3112 | 1..3110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:15 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RA | 426..3536 | 1..3110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:12 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Parp-RB | 3..3111 | 1..3110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 3461351..3462693 | 1768..3110 | 99 | <- | Minus |
3R | 3468909..3469478 | 1198..1767 | 100 | <- | Minus |
3R | 3523414..3523947 | 664..1197 | 100 | <- | Minus |
3R | 3584980..3585313 | 330..663 | 100 | <- | Minus |
3R | 3585369..3585510 | 188..329 | 100 | <- | Minus |
3R | 3586866..3587052 | 1..187 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 3461351..3462693 | 1768..3110 | 99 | <- | Minus |
3R | 3468909..3469478 | 1198..1767 | 100 | <- | Minus |
3R | 3523414..3523947 | 664..1197 | 100 | <- | Minus |
3R | 3584980..3585313 | 330..663 | 100 | <- | Minus |
3R | 3585369..3585510 | 188..329 | 100 | <- | Minus |
3R | 3586866..3587052 | 1..187 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 3461351..3462693 | 1768..3110 | 99 | <- | Minus |
3R | 3468909..3469478 | 1198..1767 | 100 | <- | Minus |
3R | 3523414..3523947 | 664..1197 | 100 | <- | Minus |
3R | 3584980..3585313 | 330..663 | 100 | <- | Minus |
3R | 3585369..3585510 | 188..329 | 100 | <- | Minus |
3R | 3586866..3587052 | 1..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:22 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 1935208..1935394 | 1..187 | 100 | -> | Plus |
3RHet | 1936750..1936891 | 188..329 | 100 | -> | Plus |
3RHet | 1936947..1937280 | 330..663 | 100 | -> | Plus |
3RHet | 1964215..1964748 | 664..1197 | 100 | -> | Plus |
3RHet | 2018688..2019257 | 1198..1767 | 100 | -> | Plus |
3RHet | 2025473..2026814 | 1768..3110 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:22 Download gff for
RE04933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 3122789..3124131 | 1768..3110 | 99 | <- | Minus |
3R | 3130347..3130916 | 1198..1767 | 100 | <- | Minus |
3R | 3184852..3185385 | 664..1197 | 100 | <- | Minus |
3R | 3246418..3246751 | 330..663 | 100 | <- | Minus |
3R | 3246807..3246948 | 188..329 | 100 | <- | Minus |
3R | 3248304..3248490 | 1..187 | 100 | | Minus |
RE04933.pep Sequence
Translation from 73 to 3057
> RE04933.pep
MDIELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWF
HKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGKKR
SKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKY
GGQPLWHHLECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIK
SEELPDTKRAKMELSDTNEEGEKKQRLKDQNDAYFRFRDDIKNKMKKKDI
DILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKSGY
ICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFN
NFPPNKSTFSRSLLKTNKNNDVLVRPTIPRISPPLYNLKFSIIGLKNQHK
ELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAEELGIHIVP
IEFLDFVEADTEGAIKYINSTCICSWGTDPKSRIPKETTKSLNSNSIYTK
SMPVSRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTDIQRNKN
SYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEI
YADKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEIS
VQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYN
VLECGSNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSL
AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYV
KNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTN
FVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGL
MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGV
EIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYSY*
RE04933.pep Blast Records
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH22365-PA | 992 | GH22365-PA | 1..992 | 1..994 | 3642 | 66.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Parp-PB | 994 | CG40411-PB | 1..994 | 1..994 | 5199 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23619-PA | 992 | GI23619-PA | 1..992 | 1..994 | 3551 | 64.5 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12354-PA | 992 | GL12354-PA | 1..992 | 1..994 | 3759 | 70.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA25584-PC | 995 | GA25584-PC | 1..995 | 1..994 | 3496 | 66.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ11149-PA | 989 | GJ11149-PA | 1..989 | 1..994 | 3594 | 65.9 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK14355-PA | 994 | GK14355-PA | 1..994 | 1..994 | 3672 | 66.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE20224-PA | 993 | GE20224-PA | 1..993 | 1..994 | 4713 | 87.4 | Plus |
RE04933.hyp Sequence
Translation from 73 to 3057
> RE04933.hyp
MDIELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWF
HKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGKKR
SKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKY
GGQPLWHHLECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIK
SEELPDTKRAKMELSDTNEEGEKKQRLKDQNDAYFRFRDDIKNKMKKKDI
DILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKSGY
ICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFN
NFPPNKSTFSRSLLKTNKNNDVLVRPTIPRISPPLYNLKFSIIGLKNQHK
ELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAEELGIHIVP
IEFLDFVEADTEGAIKYINSTCICSWGTDPKSRIPKETTKSLNSNSIYTK
SMPVSRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTDIQRNKN
SYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEI
YADKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEIS
VQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYN
VLECGSNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSL
AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYV
KNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTN
FVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGL
MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGV
EIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYSY*
RE04933.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Parp-PB | 994 | CG40411-PB | 1..994 | 1..994 | 5199 | 100 | Plus |