Clone RE04933 Report

Search the DGRC for RE04933

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:49
Well:33
Vector:pFlc-1
Associated Gene/TranscriptParp-RB
Protein status:RE04933.pep: gold
Sequenced Size:3126

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17696 2002-01-01 Sim4 clustering to Release 2
CG40411 2003-01-01 Sim4 clustering to Release 3
CG40411 2004-07-15 Blastp of sequenced clone
Parp 2008-04-29 Release 5.5 accounting
Parp 2008-08-15 Release 5.9 accounting
Parp 2008-12-18 5.12 accounting

Clone Sequence Records

RE04933.complete Sequence

3126 bp (3126 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015238

> RE04933.complete
ATTTAGGAAAATATCGCCAACATAATTCGATAAATAATAAATGTCTTGAA
ATTGACTTCCTTTAAAGTGTAATATGGATATTGAATTACCTTATCTTGCT
GAGTATGCAAGAACTGGACGAGCCACTTGCAAAGGATGTAAAAGTACTAT
ATCTAAAGATACTCTTCGGATTGCTGTCATGGTTCAATCTGCATTTCATG
ATGCCAAAGTTCCGAATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAG
CGTCCCAGCTCAGTAGGAGACATACAAAACATTGGAAATCTCCGATTTGC
CGATCAAAAGGAATTAACGGATCTTGTGGAAAATATACAAGAAGTTATAA
GCGCACAATTAGGAAAAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAA
GACTTTGGGATTGAATATGCAAAATCTAGTCGATCGACGTGTCGTGGATG
TGAACAAAAAATAAACAAGGATCTAGTTCGCTTACGTAAAACTGTTTATG
ATACTGAAGTTGGTATGAAGTACGGAGGCCAACCTTTGTGGCATCATTTG
GAATGCTTCGCCCAATTGCGCTCTGAGCTTGGCTGGTTTGCGTCAGGTGA
AGATATGCCAGGATTTCAGAGCTTAGCAGATGATGATCAAGCGAAAGTTA
AAAACGCCATACCACCAATAAAATCTGAAGAACTACCAGATACAAAAAGA
GCTAAGATGGAATTATCAGATACAAATGAAGAAGGAGAAAAGAAACAACG
CTTAAAAGATCAAAATGATGCCTACTTCAGGTTTCGCGATGACATTAAAA
ATAAAATGAAGAAGAAAGACATTGATATACTTCTAAAGTTTAATAATCAA
CAACCTGTAACTGGTGACACAGAAAAGTTATTTGATCAAACTGCCGATTT
ACTGACATTCGGAGCTATTGAATCATGTTCTGAATGCAACAGCTGTCAGT
TTATTGTTAATAAATCTGGATATATATGTAATGGAAATCATTCTGAGTGG
ACCAAATGTAACAAGCTGCTAAAAGAGCCAACAAGATCGGCATGCATAGT
GCCAAAAGAACTTAAAGCATTATATAATTTTTTGAATACCGTGAAAGAAA
TTCCATCTACACGGATCTTTAATAACTTTCCTCCCAATAAAAGTACCTTT
TCTAGAAGTCTTTTGAAAACGAATAAAAACAATGATGTTTTGGTTAGGCC
AACAATACCTCGTATAAGTCCGCCATTATACAATTTAAAGTTTTCAATTA
TAGGCTTAAAGAACCAGCATAAAGAGCTAAGAAAGCGAATAGAAAATTTG
GGCGGTAAATTTGAAGTTAAAATATCGGAAAACACGATAGCAATAATATC
AACAGAATTAGAAATACAAAAAAAATCCACCCGTATGAAGTTTGCAGAAG
AGCTCGGAATTCATATTGTGCCCATTGAATTTTTAGATTTTGTTGAAGCC
GATACAGAAGGAGCTATTAAATATATAAATAGCACATGTATTTGTAGTTG
GGGAACAGATCCAAAATCCAGAATTCCAAAGGAAACAACAAAAAGTTTAA
ATTCGAACAGTATATATACAAAATCCATGCCAGTATCACGGACATTTAAA
GTAAAAGATGGCCTAGCTGTTGATCCGGACAGTGGGCTCGAGGACATCGC
CCATGTTTACGTGGACAGTAACAATAAATACAGTGTTGTTCTTGGCTTAA
CTGACATTCAGAGAAATAAGAACTCCTACTACAAAGTTCAGCTTTTAAAA
GCGGATAAAAAGGAGAAATATTGGATTTTTCGTTCATGGGGTCGAATTGG
AACAAATATTGGAAACTCAAAACTTGAAGAGTTCGACACGAGCGAGTCTG
CAAAAAGAAATTTTAAAGAAATATATGCAGATAAAACTGGAAATGAATAC
GAGCAACGAGATAACTTTGTTAAAAGAACAGGTCGAATGTACCCAATCGA
AATTCAATATGATGATGACCAAAAGTTGGTAAAACACGAAAGCCATTTCT
TTACTTCCAAATTAGAGATTTCTGTGCAAAATTTAATAAAGCTGATTTTT
GATATTGACTCAATGAATAAAACATTGATGGAATTCCATATCGACATGGA
TAAAATGCCGCTGGGCAAGCTCAGTGCTCATCAAATCCAATCTGCTTACA
GAGTAGTGAAGGAAATTTATAATGTACTAGAATGTGGTTCCAATACTGCA
AAACTTATTGATGCAACAAATAGGTTTTATACGTTAATTCCTCATAATTT
TGGAGTTCAATTACCAACATTAATTGAAACACATCAACAAATTGAAGATT
TGCGACAAATGCTTGATTCATTAGCTGAGATAGAGGTTGCGTACAGTATA
ATCAAAAGCGAAGATGTATCTGATGCTTGTAATCCTTTAGATAATCATTA
CGCACAGATTAAAACTCAGTTGGTGGCATTAGACAAAAATAGTGAAGAAT
TTTCGATTCTTAGCCAGTACGTAAAAAACACTCATGCATCTACCCACAAA
TCTTATGATTTAAAAATTGTTGATGTATTTAAAGTATCTCGCCAAGGAGA
AGCAAGGCGCTTTAAACCATTTAAGAAGCTACATAACAGAAAATTATTAT
GGCACGGATCACGTTTAACTAATTTTGTTGGTATATTATCGCATGGTTTA
AGAATTGCTCCCCCAGAAGCGCCACCAACAGGTTATATGTTCGGAAAAGG
CATTTATTTTGCGGATATGGTTTCAAAATCCGCAAATTATTGTTGCACAA
GTCAACAAAACTCTACTGGATTAATGCTTCTATCTGAAGTTGCTTTGGGC
GATATGATGGAATGCACTTCAGCGAAATACATTAATAAACTATCAAATAA
TAAACATAGTTGTTTCGGTCGTGGTCGCACCATGCCAGATCCTACTAAGA
GCTATATAAGAAGTGATGGGGTTGAAATTCCTTACGGAGAAACCATTACT
GACGAACATTTAAAGTCATCGTTATTATATAACGAGTATATAGTATATGA
TGTTGCGCAGGTCAATATTCAATATTTGTTTCGTATGGAATTCAAGTATT
CTTATTAAATGCCTTAAATTATATTGAGTGATATTGATATTAATAAATTG
GAATTATTCTAAAAAAAAAAAAAAAA

RE04933.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Parp-RB 3224 Parp-RB 11..3126 1..3116 15565 99.9 Plus
Parp.c 3109 Parp.c 4..3107 1..3108 15455 99.8 Plus
Parp.a 3430 Parp.a 508..3428 188..3108 14605 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3RHet 2517486 chr3RHet 2025468..2026808 1768..3108 6705 100 Plus
chr3RHet 2517486 chr3RHet 2018682..2019253 1196..1767 2860 100 Plus
chr3RHet 2517486 chr3RHet 1964211..1964745 664..1198 2675 100 Plus
chr3RHet 2517486 chr3RHet 1936941..1937275 329..663 1675 100 Plus
chr3RHet 2517486 chr3RHet 1935203..1935389 1..187 935 100 Plus
chr3RHet 2517486 chr3RHet 1936745..1936886 188..329 710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 3461345..3462693 3116..1768 6730 99.9 Minus
3R 32079331 3R 3468909..3469480 1767..1196 2860 100 Minus
3R 32079331 3R 3523413..3523947 1198..664 2675 100 Minus
3R 32079331 3R 3584980..3585314 663..329 1675 100 Minus
3R 32079331 3R 3586866..3587052 187..1 935 100 Minus
3R 32079331 3R 3585369..3585510 329..188 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3122783..3124131 3116..1768 6730 99.9 Minus
3R 31820162 3R 3130347..3130918 1767..1196 2860 100 Minus
3R 31820162 3R 3184851..3185385 1198..664 2675 100 Minus
3R 31820162 3R 3246418..3246752 663..329 1675 100 Minus
3R 31820162 3R 3248304..3248490 187..1 935 100 Minus
3R 31820162 3R 3246807..3246948 329..188 710 100 Minus
Blast to na_te.dros performed 2019-03-15 11:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6486..6623 635..770 126 58.6 Plus

RE04933.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:51:10 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
chr3RHet 1935203..1935389 1..187 100 -> Plus
chr3RHet 1936745..1936886 188..329 100 -> Plus
chr3RHet 1936942..1937275 330..663 100 -> Plus
chr3RHet 1964211..1964744 664..1197 100 -> Plus
chr3RHet 2018684..2019253 1198..1767 100 -> Plus
chr3RHet 2025468..2026809 1768..3110 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:39:45 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RA 1..2985 74..3058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:20 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 1..2985 74..3058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:22 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 1..2985 74..3058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:15 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RA 1..2985 74..3058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:43:12 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 1..2985 74..3058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:39:45 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RA 426..3536 1..3110 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:20 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 4..3112 1..3110 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:22 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 4..3112 1..3110 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:15 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RA 426..3536 1..3110 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:12 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
Parp-RB 3..3111 1..3110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3461351..3462693 1768..3110 99 <- Minus
3R 3468909..3469478 1198..1767 100 <- Minus
3R 3523414..3523947 664..1197 100 <- Minus
3R 3584980..3585313 330..663 100 <- Minus
3R 3585369..3585510 188..329 100 <- Minus
3R 3586866..3587052 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3461351..3462693 1768..3110 99 <- Minus
3R 3468909..3469478 1198..1767 100 <- Minus
3R 3523414..3523947 664..1197 100 <- Minus
3R 3584980..3585313 330..663 100 <- Minus
3R 3585369..3585510 188..329 100 <- Minus
3R 3586866..3587052 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:51:10 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3461351..3462693 1768..3110 99 <- Minus
3R 3468909..3469478 1198..1767 100 <- Minus
3R 3523414..3523947 664..1197 100 <- Minus
3R 3584980..3585313 330..663 100 <- Minus
3R 3585369..3585510 188..329 100 <- Minus
3R 3586866..3587052 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:22 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
3RHet 1935208..1935394 1..187 100 -> Plus
3RHet 1936750..1936891 188..329 100 -> Plus
3RHet 1936947..1937280 330..663 100 -> Plus
3RHet 1964215..1964748 664..1197 100 -> Plus
3RHet 2018688..2019257 1198..1767 100 -> Plus
3RHet 2025473..2026814 1768..3110 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:22 Download gff for RE04933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3122789..3124131 1768..3110 99 <- Minus
3R 3130347..3130916 1198..1767 100 <- Minus
3R 3184852..3185385 664..1197 100 <- Minus
3R 3246418..3246751 330..663 100 <- Minus
3R 3246807..3246948 188..329 100 <- Minus
3R 3248304..3248490 1..187 100   Minus

RE04933.pep Sequence

Translation from 73 to 3057

> RE04933.pep
MDIELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWF
HKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGKKR
SKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKY
GGQPLWHHLECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIK
SEELPDTKRAKMELSDTNEEGEKKQRLKDQNDAYFRFRDDIKNKMKKKDI
DILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKSGY
ICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFN
NFPPNKSTFSRSLLKTNKNNDVLVRPTIPRISPPLYNLKFSIIGLKNQHK
ELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAEELGIHIVP
IEFLDFVEADTEGAIKYINSTCICSWGTDPKSRIPKETTKSLNSNSIYTK
SMPVSRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTDIQRNKN
SYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEI
YADKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEIS
VQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYN
VLECGSNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSL
AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYV
KNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTN
FVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGL
MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGV
EIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYSY*

RE04933.pep Blast Records

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22365-PA 992 GH22365-PA 1..992 1..994 3642 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Parp-PB 994 CG40411-PB 1..994 1..994 5199 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23619-PA 992 GI23619-PA 1..992 1..994 3551 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12354-PA 992 GL12354-PA 1..992 1..994 3759 70.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25584-PC 995 GA25584-PC 1..995 1..994 3496 66.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11149-PA 989 GJ11149-PA 1..989 1..994 3594 65.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14355-PA 994 GK14355-PA 1..994 1..994 3672 66.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20224-PA 993 GE20224-PA 1..993 1..994 4713 87.4 Plus

RE04933.hyp Sequence

Translation from 73 to 3057

> RE04933.hyp
MDIELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWF
HKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGKKR
SKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKY
GGQPLWHHLECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIK
SEELPDTKRAKMELSDTNEEGEKKQRLKDQNDAYFRFRDDIKNKMKKKDI
DILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKSGY
ICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFN
NFPPNKSTFSRSLLKTNKNNDVLVRPTIPRISPPLYNLKFSIIGLKNQHK
ELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAEELGIHIVP
IEFLDFVEADTEGAIKYINSTCICSWGTDPKSRIPKETTKSLNSNSIYTK
SMPVSRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTDIQRNKN
SYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEI
YADKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEIS
VQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYN
VLECGSNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSL
AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYV
KNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTN
FVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGL
MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGV
EIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYSY*

RE04933.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Parp-PB 994 CG40411-PB 1..994 1..994 5199 100 Plus