Clone RE04975 Report

Search the DGRC for RE04975

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:49
Well:75
Vector:pFlc-1
Associated Gene/TranscriptCnot4-RA
Protein status:RE04975.pep: gold
Preliminary Size:2190
Sequenced Size:3635

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5251 2002-01-01 Sim4 clustering to Release 2
CG31716 2002-03-28 Blastp of sequenced clone
CG31716 2008-04-29 Release 5.5 accounting
CG31716 2008-08-15 Release 5.9 accounting
CG31716 2008-12-18 5.12 accounting

Clone Sequence Records

RE04975.complete Sequence

3635 bp (3635 high quality bases) assembled on 2005-08-25

GenBank Submission: BT003543

> RE04975.complete
ATTAACGATAGTTTGAGCTGTGGAAAAAAATCGAATGTTTCTTGTGGAAA
AAATTGGAGTCTTTAATTTGGCGAATCCATTCGTTTACTTTGCGTTTATT
TTTAGCCTTAGTACTTTCGTTTGATACGTTTGCTACCAAGTATTTATAAA
AATTAAAAAGCGTTCAAAAACACAATTAACCATTGCAACGTCGTTTCATC
AGCTATTCAGAGTGAATAAAGAAAACCTACATCACACCTACAATCATACG
TGTTACGTGTACATACATATGTCTTGGTTCTCATCATTATCAACAATTTT
ATAAAAATTACAACTGCGAGTACTTCATCACTAATCAACAAATCACCTGA
AAATGAACGGCCTGAGCAGCAATGATGATGCAGTCGAGTGCCCTTTGTGT
ATGGAGCCGCTTGAGGTGGACGATCTGACCTTCTTTCCGTGTACCTGCGG
ATATCAGATTTGCCGATTCTGTTGGCATAGGATCCGCACGGATGAGAACA
AGCTGTGTCCGGCATGCCGAAAGGAGTATCCCGAGAATCCAGCTGACTTC
AAGCCGCTGTCGCAGGAGGAAATGATTGCCTTCAAGTCCCAGAAACGCCA
AAGGGACCAACAACGAAAACAAAAGATCACCGAGAACCGCAAACACTTGG
CCAACGTTCGCGTTGTCCAAAAGAACTTGGTGTTCGTTGTGGGGCTACCG
CCACGACTTGCTGATGCAGACATATTAAAGAAACACGAGTATTTCGGTAA
ATATGGGAAAATTCATAAAGTCGTTATAAATCCAAGTACCACGTATGCCG
GGGTCCAGGGTCCATCTGCTTCTGCGTATGTCACATATGTTAATAACTCG
GATGCCTTGCGGGCCATTCAAAGCGTCAATAATATTATGATAGACGGTCG
GCTTATAAAGACCAGCTTGGGGACAACCAAATACTGTAGCCACTTCATGA
AGAACCAGCAGTGTCCCAAGGGCGACTGCATGTACTTACATGAATTGGGC
GATCCCGAGGCCAGTTTCACAAAGGAGGAAATGCATCAGGGAAAGCACCT
GGAGTACGAGAAGCGCCTGCACGATACTCTAATTGCGTCATTGGGACCGA
ATGCAACAGGTATTGTAAATGTCGCGATTCCATCGTCATCGTCAGCGTCA
TCCTCGTCCTCTGGATCGGGTACAAATGGTTCAAGTGCATCAGGTAATGC
CCAGCAAAAGGAGGCCTGGCCAAGCTTATCGGTCTCGCCCATCAATGGCA
AAGAGGCGGCTGCCACTGCGACCAGTTCCAGTGGGAAAAGTAAACGGGAA
AAGCTGCGCAACGAGAAGAGGCACGAGAAGAACAAGGCGAAGAATAAGAA
CGGCAGCAATACAAACGCCAATGCCTCGAACAAGGAGAACTATGTTCCCG
AAACGAGAAGCAGCACAAGTACTGAGACATTCGCAGAGGCTACGGCGGAT
GCACCGGCTTCCACCAAGGCAGAACCGCCGCAAGCCTCTAGCAATAGAAC
GAGGGCGGATCGTGGAAAAGATCGGACCACGGCTAGTGCAAAGGAGCAGA
AGAAGAGCAAGGAAGCTGCTCCAGCACCTGCAGCAAGTAAACCGGCGGAG
CGGGTTGAAACAAGCGAGAGTACAATAAGACAAAAGAAGGCGGAAGTAAC
AGAAAGCTGTGAAGATAACTTACCACAAAAGAGATTAGCGGGAACAAACG
TTCAAAGATCTGTGAGCTCTTGTAGCGAAAATAGCGAAGGACACGTCTCT
GAGAGTAGCTTAAGTGAGAAGAGTTTAACTGGTGATTATGTGGAGGAAAA
GTGCAATAGTGTGAATTCGGAAAGCCAGCAAGAAAGTGTAAAGTTTCAGG
AGGAGCTCGAAAAGAGCAACGAGGCAATTGTCGAGGCCGAAACGATTCTG
CCAACAGCTGAGTCCTCTGAGGACATCAGTCCCGCTGCAGTTGCGCCAGG
CAATGGAGAAGTCGAAGGATGCTTACCCGTTGTTGATCCAGTCGAACCAC
CGAGTCTGGCGGATAATGGAAGCAGAGTAACAGATGCGCTATCTAAGCTG
AACATTTTCGATGACACGCCTAGCTTTTTCACATCGCCATCATTCCAGCA
AGCACCCATATTAAAGAATAAGCTAGATTTGGAAATGCGACAGTCTCATT
TACCTGACTTGGTCAACGACATTGATGGAATCCAAAAGGCATCCAATACA
AACGAGTGGGAGGAAGCCTTCAAAAATGTGATGATGGGCAACACGCAGCA
CATGGAGGAGCAACTGTTGCAGCAGCAACATTTGCAGCAGCATCAGAATT
TGCGCCACCAGCTGGTGTTGCAACAGGAGGAGTTCCTTCGCATGCAAGAA
TTACAGAAACGCAACAACTTTGCGACGCAAATCAACGGTCCTGCGAATGA
TTTCCTTAGAGCTTATGAGCTCAGAGCTCAAGCCAATGCAATCATTCAGC
AACAATTATTACAACAGCACGCAGGCGAAAATCTATTTGGCGGCAACATG
TCGAAGTTCTTCGATTTCCATAAAAGTCAGCCGCAGTCACACCATCAGTA
TCTAAATGGACATCCGCCTCAAATCAATGGGAACGGTGCTGTGCCGGAGC
CGCAAAGAGTGGCGGCCTCTTTGGAAAGCAATCGACTGAATTCGCCTTTT
GTCGAAAATGGACTTATTAACTCGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAACAAAAGCAGAGAATGATGGGAATGTATGAATTTATGCCTCCAAACA
CGCAATCTCAGCAGAATCGGTTTACACAGAACTCGATAGTCGACGATGAC
TTAGGATTCGACCCGTTCGTTGAGACCCAAAAGGGACTTGCTGAACTTAT
GGAAAATGAGGTGGTCCAAAAACAGAGTATTAATAATGAGAACCCCTTGC
CGAAGTTGCCGCCACAGCCTCAAGTTCCACCCCATCCGCAATTGGTGGAC
AACCTGCAGCGAGCTCGCATGCCGCCGCCAGGCTTCAATCACGTCAACAC
ATTGGGCTTGGGCGGTGCATCCAGACTGCAGCTCACCAGCAAAATAATAC
CCTTCATGAACATGCCCGTCAATGGGGTGGGCAACAGCGGTGCCCAGGGA
CAGCACCAAATGCCAATGGGTGTCAACTGGAATGCGCCGATGGGCATGCA
CCAGAACCCGGGACAGCCCGTGGGTGATTCGCAATTGCAGCATCCAATGG
CTCACAACAAGGTTTACAACAACAGTGATTGGACTTCAATGGATCCGGCT
ATACTTTCGTTTAGACAGTATTCTTCTTTTCCACAAAACCAAATTCCCCC
ACATCCTCAGCAGCAACAGGATTTATTTTTGCAGCATTTGGCTCAACAGC
AAAATTCCCAGAGTGGTGGTTTCAACAACCAGGCACAGCAAATGCTTCCT
ATGGGGATGCCCAATAGTTTGCTGAACGGACAACAAACGCAGCCGCCACA
GGTCAATGCCAATGTTCAGGGCATGCTTGAGTTTTTAAAAAGCCGTCAAT
TCGTTTAGCTACAATACATATAAATAATACATTTGTTTACCTGTACTCTT
TATTAAATATTTCTTAAAGTAAATATAGGCAAAATAAAATTCGAATATAA
TGAAACTACATGATACAAACAAAAAAAAAAAAAAA

RE04975.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31716-RA 3791 CG31716-RA 25..3647 1..3623 18100 99.9 Plus
CG31716-RC 3560 CG31716-RC 140..3560 203..3623 17105 100 Plus
CG31716.b 3836 CG31716.b 1192..3698 1117..3623 12535 100 Plus
CG31716.b 3836 CG31716.b 1..571 1..571 2840 99.8 Plus
CG31716.b 3836 CG31716.b 623..1172 572..1121 2750 100 Plus
CG31716-RC 3560 CG31716-RC 1..144 1..144 690 98.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10398623..10399535 1121..2033 4550 99.9 Plus
chr2L 23010047 chr2L 10400780..10401189 2803..3212 2035 99.8 Plus
chr2L 23010047 chr2L 10395569..10395840 1..272 1345 99.6 Plus
chr2L 23010047 chr2L 10400189..10400451 2399..2661 1300 99.6 Plus
chr2L 23010047 chr2L 10401486..10401738 3368..3620 1265 100 Plus
chr2L 23010047 chr2L 10398171..10398392 807..1028 1110 100 Plus
chr2L 23010047 chr2L 10399932..10400127 2204..2399 980 100 Plus
chr2L 23010047 chr2L 10396891..10397075 273..457 925 100 Plus
chr2L 23010047 chr2L 10401262..10401420 3212..3370 795 100 Plus
chr2L 23010047 chr2L 10397300..10397453 572..725 755 99.4 Plus
chr2L 23010047 chr2L 10399588..10399725 2031..2168 690 100 Plus
chr2L 23010047 chr2L 10397132..10397248 455..571 585 100 Plus
chr2L 23010047 chr2L 10398449..10398544 1026..1121 480 100 Plus
chr2L 23010047 chr2L 10397510..10397597 722..809 440 100 Plus
chr2L 23010047 chr2L 10400517..10400597 2660..2740 405 100 Plus
chr2L 23010047 chr2L 10400659..10400724 2740..2805 330 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10399767..10400679 1121..2033 4565 100 Plus
2L 23513712 2L 10401924..10402333 2803..3212 2050 100 Plus
2L 23513712 2L 10396711..10396982 1..272 1345 99.6 Plus
2L 23513712 2L 10401333..10401595 2399..2661 1315 100 Plus
2L 23513712 2L 10402630..10402885 3368..3623 1280 100 Plus
2L 23513712 2L 10399315..10399536 807..1028 1110 100 Plus
2L 23513712 2L 10401076..10401271 2204..2399 980 100 Plus
2L 23513712 2L 10398035..10398219 273..457 925 100 Plus
2L 23513712 2L 10402406..10402564 3212..3370 795 100 Plus
2L 23513712 2L 10398444..10398597 572..725 755 99.4 Plus
2L 23513712 2L 10400732..10400869 2031..2168 690 100 Plus
2L 23513712 2L 10398276..10398392 455..571 585 100 Plus
2L 23513712 2L 10399593..10399688 1026..1121 480 100 Plus
2L 23513712 2L 10398654..10398741 722..809 440 100 Plus
2L 23513712 2L 10401661..10401741 2660..2740 405 100 Plus
2L 23513712 2L 10401803..10401868 2740..2805 330 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10399767..10400679 1121..2033 4565 100 Plus
2L 23513712 2L 10401924..10402333 2803..3212 2050 100 Plus
2L 23513712 2L 10396711..10396982 1..272 1345 99.6 Plus
2L 23513712 2L 10401333..10401595 2399..2661 1315 100 Plus
2L 23513712 2L 10402630..10402885 3368..3623 1280 100 Plus
2L 23513712 2L 10399315..10399536 807..1028 1110 100 Plus
2L 23513712 2L 10401076..10401271 2204..2399 980 100 Plus
2L 23513712 2L 10398035..10398219 273..457 925 100 Plus
2L 23513712 2L 10402406..10402564 3212..3370 795 100 Plus
2L 23513712 2L 10398444..10398597 572..725 755 99.3 Plus
2L 23513712 2L 10400732..10400869 2031..2168 690 100 Plus
2L 23513712 2L 10398276..10398392 455..571 585 100 Plus
2L 23513712 2L 10399593..10399688 1026..1121 480 100 Plus
2L 23513712 2L 10398654..10398741 722..809 440 100 Plus
2L 23513712 2L 10401661..10401741 2660..2740 405 100 Plus
2L 23513712 2L 10401803..10401868 2740..2805 330 100 Plus
2L 23513712 2L 10400962..10400998 2168..2204 185 100 Plus
Blast to na_te.dros performed 2019-03-16 22:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6891 2238..2328 157 67 Plus
transib1 2167 transib1 TRANSIB1 2167bp 1893..1991 3608..3506 153 68.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6819 2238..2331 152 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6903 2238..2369 145 59.6 Plus
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 6747..6813 195..261 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6784 2261..2332 135 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6835 2238..2332 134 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6829 2256..2367 133 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2796..3010 1240..1455 128 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2419 2238..2331 125 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6931 2238..2379 123 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6913 2238..2332 123 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2626..2669 2259..2302 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2424 2256..2368 118 58.6 Plus

RE04975.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:12:41 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10397300..10397449 572..721 100 -> Plus
chr2L 10397510..10397596 722..808 100 -> Plus
chr2L 10398173..10398391 809..1027 100 -> Plus
chr2L 10398451..10398544 1028..1121 100 -> Plus
chr2L 10396891..10397075 273..457 100 -> Plus
chr2L 10397135..10397248 458..571 100 -> Plus
chr2L 10395569..10395840 1..272 99 -> Plus
chr2L 10398624..10399535 1122..2033 99 -> Plus
chr2L 10399591..10399725 2034..2168 100 -> Plus
chr2L 10399819..10399854 2169..2204 100 -> Plus
chr2L 10399933..10400127 2205..2399 100 -> Plus
chr2L 10400190..10400450 2400..2660 99 -> Plus
chr2L 10400518..10400597 2661..2740 50 -> Plus
chr2L 10400660..10400723 2741..2804 100 -> Plus
chr2L 10400782..10401189 2805..3212 99 -> Plus
chr2L 10401263..10401418 3213..3368 100 -> Plus
chr2L 10401487..10401738 3369..3620 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:48:49 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RE 1..3156 353..3508 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:19 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RD 1..3156 353..3508 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:16 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
Cnot4-RE 1..3156 353..3508 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:03 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RE 1..3156 353..3508 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:24 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
Cnot4-RE 1..3156 353..3508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:16 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RA 1..3620 1..3620 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:19 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RA 1..3620 1..3620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:16 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
Cnot4-RA 1..3615 6..3620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:03 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
CG31716-RA 1..3620 1..3620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:24 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
Cnot4-RA 1..3615 6..3620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:41 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10399317..10399535 809..1027 100 -> Plus
2L 10399595..10399688 1028..1121 100 -> Plus
2L 10396711..10396982 1..272 99 -> Plus
2L 10398035..10398219 273..457 100 -> Plus
2L 10398279..10398392 458..571 100 -> Plus
2L 10398444..10398593 572..721 100 -> Plus
2L 10398654..10398740 722..808 100 -> Plus
2L 10399768..10400679 1122..2033 100 -> Plus
2L 10400735..10400869 2034..2168 100 -> Plus
2L 10400963..10400998 2169..2204 100 -> Plus
2L 10401077..10401271 2205..2399 100 -> Plus
2L 10401334..10401594 2400..2660 100 -> Plus
2L 10401662..10401741 2661..2740 100 -> Plus
2L 10401804..10401867 2741..2804 100 -> Plus
2L 10401926..10402333 2805..3212 100 -> Plus
2L 10402407..10402562 3213..3368 100 -> Plus
2L 10402631..10402882 3369..3620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:41 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10399317..10399535 809..1027 100 -> Plus
2L 10399595..10399688 1028..1121 100 -> Plus
2L 10396711..10396982 1..272 99 -> Plus
2L 10398035..10398219 273..457 100 -> Plus
2L 10398279..10398392 458..571 100 -> Plus
2L 10398444..10398593 572..721 100 -> Plus
2L 10398654..10398740 722..808 100 -> Plus
2L 10399768..10400679 1122..2033 100 -> Plus
2L 10400735..10400869 2034..2168 100 -> Plus
2L 10400963..10400998 2169..2204 100 -> Plus
2L 10401077..10401271 2205..2399 100 -> Plus
2L 10401334..10401594 2400..2660 100 -> Plus
2L 10401662..10401741 2661..2740 100 -> Plus
2L 10401804..10401867 2741..2804 100 -> Plus
2L 10401926..10402333 2805..3212 100 -> Plus
2L 10402407..10402562 3213..3368 100 -> Plus
2L 10402631..10402882 3369..3620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:41 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10399317..10399535 809..1027 100 -> Plus
2L 10399595..10399688 1028..1121 100 -> Plus
2L 10396711..10396982 1..272 99 -> Plus
2L 10398035..10398219 273..457 100 -> Plus
2L 10398279..10398392 458..571 100 -> Plus
2L 10398444..10398593 572..721 100 -> Plus
2L 10398654..10398740 722..808 100 -> Plus
2L 10399768..10400679 1122..2033 100 -> Plus
2L 10400735..10400869 2034..2168 100 -> Plus
2L 10400963..10400998 2169..2204 100 -> Plus
2L 10401077..10401271 2205..2399 100 -> Plus
2L 10401334..10401594 2400..2660 100 -> Plus
2L 10401662..10401741 2661..2740 100 -> Plus
2L 10401804..10401867 2741..2804 100 -> Plus
2L 10401926..10402333 2805..3212 100 -> Plus
2L 10402407..10402562 3213..3368 100 -> Plus
2L 10402631..10402882 3369..3620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:16 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10398444..10398593 572..721 100 -> Plus
arm_2L 10398654..10398740 722..808 100 -> Plus
arm_2L 10398279..10398392 458..571 100 -> Plus
arm_2L 10396711..10396982 1..272 99 -> Plus
arm_2L 10398035..10398219 273..457 100 -> Plus
arm_2L 10399317..10399535 809..1027 100 -> Plus
arm_2L 10399595..10399688 1028..1121 100 -> Plus
arm_2L 10399768..10400679 1122..2033 100 -> Plus
arm_2L 10400735..10400869 2034..2168 100 -> Plus
arm_2L 10400963..10400998 2169..2204 100 -> Plus
arm_2L 10401077..10401271 2205..2399 100 -> Plus
arm_2L 10401334..10401594 2400..2660 100 -> Plus
arm_2L 10401662..10401741 2661..2740 100 -> Plus
arm_2L 10401804..10401867 2741..2804 100 -> Plus
arm_2L 10401926..10402333 2805..3212 100 -> Plus
arm_2L 10402407..10402562 3213..3368 100 -> Plus
arm_2L 10402631..10402882 3369..3620 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:37 Download gff for RE04975.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10396711..10396982 1..272 99 -> Plus
2L 10398035..10398219 273..457 100 -> Plus
2L 10398279..10398392 458..571 100 -> Plus
2L 10398444..10398593 572..721 100 -> Plus
2L 10398654..10398740 722..808 100 -> Plus
2L 10399317..10399535 809..1027 100 -> Plus
2L 10399595..10399688 1028..1121 100 -> Plus
2L 10399768..10400679 1122..2033 100 -> Plus
2L 10400735..10400869 2034..2168 100 -> Plus
2L 10400963..10400998 2169..2204 100 -> Plus
2L 10401077..10401271 2205..2399 100 -> Plus
2L 10401334..10401594 2400..2660 100 -> Plus
2L 10401662..10401741 2661..2740 100 -> Plus
2L 10401804..10401867 2741..2804 100 -> Plus
2L 10401926..10402333 2805..3212 100 -> Plus
2L 10402407..10402562 3213..3368 100 -> Plus
2L 10402631..10402882 3369..3620 100   Plus

RE04975.pep Sequence

Translation from 352 to 3507

> RE04975.pep
MNGLSSNDDAVECPLCMEPLEVDDLTFFPCTCGYQICRFCWHRIRTDENK
LCPACRKEYPENPADFKPLSQEEMIAFKSQKRQRDQQRKQKITENRKHLA
NVRVVQKNLVFVVGLPPRLADADILKKHEYFGKYGKIHKVVINPSTTYAG
VQGPSASAYVTYVNNSDALRAIQSVNNIMIDGRLIKTSLGTTKYCSHFMK
NQQCPKGDCMYLHELGDPEASFTKEEMHQGKHLEYEKRLHDTLIASLGPN
ATGIVNVAIPSSSSASSSSSGSGTNGSSASGNAQQKEAWPSLSVSPINGK
EAAATATSSSGKSKREKLRNEKRHEKNKAKNKNGSNTNANASNKENYVPE
TRSSTSTETFAEATADAPASTKAEPPQASSNRTRADRGKDRTTASAKEQK
KSKEAAPAPAASKPAERVETSESTIRQKKAEVTESCEDNLPQKRLAGTNV
QRSVSSCSENSEGHVSESSLSEKSLTGDYVEEKCNSVNSESQQESVKFQE
ELEKSNEAIVEAETILPTAESSEDISPAAVAPGNGEVEGCLPVVDPVEPP
SLADNGSRVTDALSKLNIFDDTPSFFTSPSFQQAPILKNKLDLEMRQSHL
PDLVNDIDGIQKASNTNEWEEAFKNVMMGNTQHMEEQLLQQQHLQQHQNL
RHQLVLQQEEFLRMQELQKRNNFATQINGPANDFLRAYELRAQANAIIQQ
QLLQQHAGENLFGGNMSKFFDFHKSQPQSHHQYLNGHPPQINGNGAVPEP
QRVAASLESNRLNSPFVENGLINSQQQQQQQQQQQKQRMMGMYEFMPPNT
QSQQNRFTQNSIVDDDLGFDPFVETQKGLAELMENEVVQKQSINNENPLP
KLPPQPQVPPHPQLVDNLQRARMPPPGFNHVNTLGLGGASRLQLTSKIIP
FMNMPVNGVGNSGAQGQHQMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMA
HNKVYNNSDWTSMDPAILSFRQYSSFPQNQIPPHPQQQQDLFLQHLAQQQ
NSQSGGFNNQAQQMLPMGMPNSLLNGQQTQPPQVNANVQGMLEFLKSRQF
V*

RE04975.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15780-PA 1060 GF15780-PA 1..1060 1..1051 3874 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10123-PA 1051 GG10123-PA 1..1051 1..1051 4521 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13370-PA 1068 GH13370-PA 1..1068 1..1051 2639 57.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cnot4-PA 1051 CG31716-PA 1..1051 1..1051 5497 100 Plus
Cnot4-PB 1051 CG31716-PB 1..1051 1..1051 5497 100 Plus
Cnot4-PE 1051 CG31716-PE 1..1051 1..1051 5497 100 Plus
Cnot4-PD 1051 CG31716-PD 1..1051 1..1051 5497 100 Plus
Cnot4-PC 1051 CG31716-PC 1..1051 1..1051 5497 100 Plus
Cnot4-PJ 1054 CG31716-PJ 1..1054 1..1051 5483 99.7 Plus
Cnot4-PH 1059 CG31716-PH 1..1059 1..1051 5478 99.2 Plus
Cnot4-PK 1062 CG31716-PK 1..1062 1..1051 5464 99 Plus
Cnot4-PI 1047 CG31716-PI 1..1047 1..1051 5462 99.6 Plus
Cnot4-PG 1047 CG31716-PG 1..1047 1..1051 5462 99.6 Plus
Cnot4-PL 1050 CG31716-PL 1..1050 1..1051 5448 99.3 Plus
Ptip-PA 2294 CG32133-PA 453..1159 392..1051 187 19.2 Plus
Muc68D-PB 1514 CG6004-PB 482..797 248..557 162 21 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18285-PA 1056 GI18285-PA 1..1056 1..1051 2646 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19177-PA 900 GL19177-PA 1..894 1..1007 2349 54.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28160-PA 607 GA28160-PA 170..607 618..1051 1081 61.5 Plus
Dpse\GA28160-PA 607 GA28160-PA 1..152 1..152 855 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23693-PA 1053 GD23693-PA 1..1053 1..1051 4708 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21812-PA 1077 GJ21812-PA 1..1077 1..1051 2747 56.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18552-PA 580 GK18552-PA 1..273 1..275 1354 88.8 Plus
Dwil\GK18552-PA 580 GK18552-PA 345..580 818..1051 648 59 Plus
Dwil\GK18552-PA 580 GK18552-PA 263..374 607..715 168 47.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18937-PA 1053 GE18937-PA 1..1053 1..1051 4482 88.8 Plus
Dyak\GE19481-PA 266 GE19481-PA 1..182 74..332 789 67.2 Plus
Dyak\GE15130-PA 190 GE15130-PA 1..106 199..332 446 73.9 Plus

RE04975.hyp Sequence

Translation from 352 to 3507

> RE04975.hyp
MNGLSSNDDAVECPLCMEPLEVDDLTFFPCTCGYQICRFCWHRIRTDENK
LCPACRKEYPENPADFKPLSQEEMIAFKSQKRQRDQQRKQKITENRKHLA
NVRVVQKNLVFVVGLPPRLADADILKKHEYFGKYGKIHKVVINPSTTYAG
VQGPSASAYVTYVNNSDALRAIQSVNNIMIDGRLIKTSLGTTKYCSHFMK
NQQCPKGDCMYLHELGDPEASFTKEEMHQGKHLEYEKRLHDTLIASLGPN
ATGIVNVAIPSSSSASSSSSGSGTNGSSASGNAQQKEAWPSLSVSPINGK
EAAATATSSSGKSKREKLRNEKRHEKNKAKNKNGSNTNANASNKENYVPE
TRSSTSTETFAEATADAPASTKAEPPQASSNRTRADRGKDRTTASAKEQK
KSKEAAPAPAASKPAERVETSESTIRQKKAEVTESCEDNLPQKRLAGTNV
QRSVSSCSENSEGHVSESSLSEKSLTGDYVEEKCNSVNSESQQESVKFQE
ELEKSNEAIVEAETILPTAESSEDISPAAVAPGNGEVEGCLPVVDPVEPP
SLADNGSRVTDALSKLNIFDDTPSFFTSPSFQQAPILKNKLDLEMRQSHL
PDLVNDIDGIQKASNTNEWEEAFKNVMMGNTQHMEEQLLQQQHLQQHQNL
RHQLVLQQEEFLRMQELQKRNNFATQINGPANDFLRAYELRAQANAIIQQ
QLLQQHAGENLFGGNMSKFFDFHKSQPQSHHQYLNGHPPQINGNGAVPEP
QRVAASLESNRLNSPFVENGLINSQQQQQQQQQQQKQRMMGMYEFMPPNT
QSQQNRFTQNSIVDDDLGFDPFVETQKGLAELMENEVVQKQSINNENPLP
KLPPQPQVPPHPQLVDNLQRARMPPPGFNHVNTLGLGGASRLQLTSKIIP
FMNMPVNGVGNSGAQGQHQMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMA
HNKVYNNSDWTSMDPAILSFRQYSSFPQNQIPPHPQQQQDLFLQHLAQQQ
NSQSGGFNNQAQQMLPMGMPNSLLNGQQTQPPQVNANVQGMLEFLKSRQF
V*

RE04975.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cnot4-PA 1051 CG31716-PA 1..1051 1..1051 5497 100 Plus
Cnot4-PB 1051 CG31716-PB 1..1051 1..1051 5497 100 Plus
Cnot4-PE 1051 CG31716-PE 1..1051 1..1051 5497 100 Plus
Cnot4-PD 1051 CG31716-PD 1..1051 1..1051 5497 100 Plus
Cnot4-PC 1051 CG31716-PC 1..1051 1..1051 5497 100 Plus