BDGP Sequence Production Resources |
Search the DGRC for RE05274
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 52 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | sosie-RA |
Protein status: | RE05274.pep: gold |
Preliminary Size: | 954 |
Sequenced Size: | 1753 |
Gene | Date | Evidence |
---|---|---|
CG13636 | 2002-11-22 | Blastp of sequenced clone |
CG13636 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13636 | 2008-04-29 | Release 5.5 accounting |
CG13636 | 2008-08-15 | Release 5.9 accounting |
CG13636 | 2008-12-18 | 5.12 accounting |
1753 bp (1753 high quality bases) assembled on 2002-11-22
GenBank Submission: BT003219
> RE05274.complete CTTGCATTTCGAGCGCGCAGGCGACTGGTTGGAGCTACCCGTCCGAAGAC CCCAAGTGGAAGTTGCGACTATAGCGAGTGCCCCAAAGTATTGGAGATTT TTTGGAGTGACGCCTCTCGTGCGGTTTTGTTTTGCTTCGGACTTTCTGGC GGAGCGGAAACGATTTCGGTGTGAAAATTTGCATAAAATTGTGCCCGCGA AACCGACATAGAAACGAAAAAAGCGTTAAGTAAACCAATTTAAAGCCTTT GGGCCGTTTTTCAAGCTCGCAAAGTGCGTGTGCAACCCGTTGCGGTCCTG TGGAATTTATATAAGACCCGAAAAAGGACTTCTTTCCGACTTCTTCAAGT CCTGGTCTCGACTCAAAACTCGATTAGTTACCGATTCCAAAATGCAGCCC CTGAAGCGCTTCACACAATGCGGCAGTCTGACCATGCTCTTCGGCATCTT CATCATCCTCTTCGGGGTCAGCTCCACGGCTCTGACCACTTTTGGCAAGA CCAACAATCAGCCGCCTCCCACGCACGTCCCAATTGTTAAAGGACGAGAG TGCAGTGCCCACGATGATTGCACGGCGATAGATCGCACCAGCTGCGTCAA GGATCCCAATGACTACAAGCTGCGTTGCCTATGCGGCGACGACTCGCCTC CTTCGGCTGGCAGCTGTCCAGATGTCCTGAAAGGCCTGCGTCACAAGTGC AACAGCAACAACGACTGCGAGGATGGAATGGTGTGCCAGTACGAGAACAG CAACCGCACCATCGGAGTGGCCAAGTTCATGTCCAGCAAGACCAAGCTGT GTCTCTGCGACAACGACAACGGATATGTGGAGGACATCCTGCACGACATC TGCAGTGGAGCTAATCTTCAGGGCCTGGTCAGCTTCTTGGTCTCGATCTG CTCACTTCTGGCGCCCTTTTTGGTATCCGCCCACATGCGAAAGCATTTCT AGAAGGCGATCGTCGAAAGCGGAACCGGAAGACGTAGTTTGGCGTTTATC TACCCCAGTGATCCATCAAATGTGCCTCAGTGAAACCAACAGAAACAAAA GATCATCCTACCCCTACCACTAACCCCTCACATATAAAAAAATACGAAAA GTAAATCTTGAAAAGCGAAAAAAATAAGAGAAAATACGTGGAAATGAAAT TAAGAAAGTTAGATACTCGTCGCCATTAGCCTAAAAGTCGTTCTATTGTA TAAGTTTCATATGTACCACCGTCAAGTTTATTCGCTTCTCACGAAAAGTT GCGTTATATACAATATACATAATTGTATTATCTGATAAACGTTTTCCATA GATCCCCAATCGAACTTAGTCCGTACTCCCTACACTAGACAGACCGAAGT AACTTTAGATCAAATGTTAGGCACCATTTTATTGTAATTTTATATGAGTG TACGTGTGTGTCCAGGAATAATCACTAAAAATCGAGAGAAATTATCTAGT GATAGGCAACTTTTCAGCAGCACTGTGAATTCAGATCGCTTACATCGCAA TTACAAATGTGAAACATTTTTAATTTTTGTATGTATTCAATATAAATAGC TTTACGAGCTCACAGCCCATAATCGAATGGAATAATAATAATAATAATAA TAATAAAATATGGGAGACGATAAAAGTTAATAATATTTTCATGTCCAAGT TGCAGGTCCAGATAAGAATTTCACCCATTAAAACCGTTTTCTTCGTAGCT GTTATCTATACTATTTAATAAAAACCTTTAAAAACCCAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20662849..20663728 | 859..1737 | 4290 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 20659924..20660463 | 1..540 | 2685 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 20662550..20662728 | 682..860 | 895 | 100 | Plus |
chr3R | 27901430 | chr3R | 20661289..20661437 | 536..684 | 745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24839610..24840491 | 859..1740 | 4395 | 99.9 | Plus |
3R | 32079331 | 3R | 24836682..24837221 | 1..540 | 2685 | 99.8 | Plus |
3R | 32079331 | 3R | 24839311..24839489 | 682..860 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24838050..24838198 | 536..684 | 745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24580441..24581322 | 859..1740 | 4395 | 99.8 | Plus |
3R | 31820162 | 3R | 24577513..24578052 | 1..540 | 2685 | 99.8 | Plus |
3R | 31820162 | 3R | 24580142..24580320 | 682..860 | 895 | 100 | Plus |
3R | 31820162 | 3R | 24578881..24579029 | 536..684 | 745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20661290..20661436 | 537..683 | 100 | -> | Plus |
chr3R | 20662552..20662728 | 684..860 | 100 | -> | Plus |
chr3R | 20659924..20660459 | 1..536 | 100 | -> | Plus |
chr3R | 20662851..20663728 | 861..1737 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 1..561 | 392..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 1..561 | 392..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sosie-RA | 1..561 | 392..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 1..561 | 392..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sosie-RA | 1..561 | 392..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 3..1739 | 1..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 3..1739 | 1..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sosie-RA | 2..1738 | 1..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13636-RA | 3..1739 | 1..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sosie-RA | 2..1738 | 1..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24836682..24837217 | 1..536 | 100 | -> | Plus |
3R | 24838051..24838197 | 537..683 | 100 | -> | Plus |
3R | 24839313..24839489 | 684..860 | 100 | -> | Plus |
3R | 24839612..24840488 | 861..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24836682..24837217 | 1..536 | 100 | -> | Plus |
3R | 24838051..24838197 | 537..683 | 100 | -> | Plus |
3R | 24839313..24839489 | 684..860 | 100 | -> | Plus |
3R | 24839612..24840488 | 861..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24836682..24837217 | 1..536 | 100 | -> | Plus |
3R | 24838051..24838197 | 537..683 | 100 | -> | Plus |
3R | 24839313..24839489 | 684..860 | 100 | -> | Plus |
3R | 24839612..24840488 | 861..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20665035..20665211 | 684..860 | 100 | -> | Plus |
arm_3R | 20662404..20662939 | 1..536 | 100 | -> | Plus |
arm_3R | 20663773..20663919 | 537..683 | 100 | -> | Plus |
arm_3R | 20665334..20666210 | 861..1737 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24580144..24580320 | 684..860 | 100 | -> | Plus |
3R | 24577513..24578048 | 1..536 | 100 | -> | Plus |
3R | 24578882..24579028 | 537..683 | 100 | -> | Plus |
3R | 24580443..24581319 | 861..1737 | 99 | Plus |
Translation from 391 to 951
> RE05274.pep MQPLKRFTQCGSLTMLFGIFIILFGVSSTALTTFGKTNNQPPPTHVPIVK GRECSAHDDCTAIDRTSCVKDPNDYKLRCLCGDDSPPSAGSCPDVLKGLR HKCNSNNDCEDGMVCQYENSNRTIGVAKFMSSKTKLCLCDNDNGYVEDIL HDICSGANLQGLVSFLVSICSLLAPFLVSAHMRKHF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16994-PA | 186 | GF16994-PA | 1..186 | 1..186 | 931 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11324-PA | 186 | GG11324-PA | 1..186 | 1..186 | 984 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19596-PA | 183 | GH19596-PA | 1..183 | 1..186 | 798 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sosie-PA | 186 | CG13636-PA | 1..186 | 1..186 | 1014 | 100 | Plus |
sosie-PC | 74 | CG13636-PC | 1..74 | 113..186 | 391 | 100 | Plus |
sosie-PB | 74 | CG13636-PB | 1..74 | 113..186 | 391 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23989-PA | 188 | GI23989-PA | 1..188 | 1..186 | 836 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13789-PA | 186 | GL13789-PA | 1..186 | 1..186 | 935 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26795-PA | 186 | GA26795-PA | 1..186 | 1..186 | 935 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17767-PA | 186 | GM17767-PA | 1..186 | 1..186 | 984 | 100 | Plus |
Dsec\GM26632-PA | 74 | GM26632-PA | 1..74 | 113..186 | 373 | 95.9 | Plus |
Dsec\GM26631-PA | 80 | GM26631-PA | 1..80 | 1..109 | 280 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21135-PA | 186 | GD21135-PA | 1..186 | 1..186 | 984 | 100 | Plus |
Dsim\GD15183-PA | 92 | GD15183-PA | 4..92 | 98..186 | 471 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23625-PA | 188 | GJ23625-PA | 1..188 | 1..186 | 855 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22487-PA | 187 | GK22487-PA | 1..187 | 1..186 | 917 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23520-PA | 186 | GE23520-PA | 1..186 | 1..186 | 980 | 99.5 | Plus |
Translation from 391 to 951
> RE05274.hyp MQPLKRFTQCGSLTMLFGIFIILFGVSSTALTTFGKTNNQPPPTHVPIVK GRECSAHDDCTAIDRTSCVKDPNDYKLRCLCGDDSPPSAGSCPDVLKGLR HKCNSNNDCEDGMVCQYENSNRTIGVAKFMSSKTKLCLCDNDNGYVEDIL HDICSGANLQGLVSFLVSICSLLAPFLVSAHMRKHF*