BDGP Sequence Production Resources |
Search the DGRC for RE05288
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 52 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14621-RA |
Protein status: | RE05288.pep: gold |
Preliminary Size: | 1151 |
Sequenced Size: | 1558 |
Gene | Date | Evidence |
---|---|---|
CG14621 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14621 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14621 | 2003-02-10 | Blastp of sequenced clone |
CG14621 | 2008-04-29 | Release 5.5 accounting |
CG14621 | 2008-08-15 | Release 5.9 accounting |
CG14621 | 2008-12-18 | 5.12 accounting |
1558 bp (1558 high quality bases) assembled on 2003-02-10
GenBank Submission: BT003539
> RE05288.complete CTGGTAACACTGACAGAAAACAAAAAACAGACGACGTTTTAATAGACGAT TTAAATTTTAAAAGAACAACAGGCGCAATGCAATAAGCCCCGCGTGTCGG ATTGTCAGCACCATCAGCAGCTCCAGGACCAGGTCTTGCCACTTGCCCCT CGCCCGTCGCCAACGATTCGCGGTAGAATCGGCACCGCACCTAAGCCACG AGAGCACGGGCCAATCCCAGACGAAAAATGCTAGGCAAGCGGACTGGGTC GCGGCACATAGCGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCT CCTCCAGCAACAACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTT CCGATGACCGTGACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGG ACCCTTCTTCAACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTC CCTACTATTACCGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCC TCCGTCACCTCGCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCA CACGGTCAAAGCCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTT TTTTTGGTGAGAAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATT ATCACCGGCGTGGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGAT GGGCCTTATCAGCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACA TTTTCTCAAAAAAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTG CTGCATTTGCTTGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCT TTACATGGACAGCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAG ACTATCGAGTTATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTG CAGAACATCATCGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTA TGCGGTGGCCAGCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCC TAATCCTGGGCAACCCAGTGACGTGGGTCAATTGCGTAGGCATGACGCTG GCCATTGTGGGTGTGCTCTGCTACAATCGCGCCAAACAGCTTACGCGGGG TCGCGAGCAACCGACACTGCCGCTGTCGCAGACTAGCTATGTCAAGTACT CGCCGCTGGAGCAACAGGCAGATCCGTACTACCGGGGATCGGTCAACGGG AAGCTATCCAATGGCTTGCACAGAACGCCCGGAAACAGTCTGCTGGCGAA TGGCAGCGGAATGCCGAGCGGGACGGCAACGCGGCTACTATTTGTTTAGT GTGTAGTTAGTGAATGTATCCAATAAGCGGGTTAGCTAAATAGTATTAAC CTGTGACGACCACCATCCAAATTCCGACTCTCCCCTCTTTTATATATATA AATATATATATGTATTTATATTATTATATTATATTTATATTTATATATTT ATATATATATATATATAGTGTATATATTAAATATGTTTGACCAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21842497..21843147 | 891..1541 | 3255 | 100 | Plus |
chrX | 22417052 | chrX | 21840720..21841274 | 1..555 | 2775 | 100 | Plus |
chrX | 22417052 | chrX | 21841740..21841951 | 555..766 | 1060 | 100 | Plus |
chrX | 22417052 | chrX | 21842013..21842140 | 763..890 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 22446531..22447185 | 891..1545 | 3260 | 99.8 | Plus |
X | 23542271 | X | 22444754..22445308 | 1..555 | 2775 | 100 | Plus |
X | 23542271 | X | 22445774..22445985 | 555..766 | 1060 | 100 | Plus |
X | 23542271 | X | 22446047..22446174 | 763..890 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 22431623..22432277 | 891..1545 | 3260 | 99.8 | Plus |
X | 23527363 | X | 22429846..22430400 | 1..555 | 2775 | 100 | Plus |
X | 23527363 | X | 22430866..22431077 | 555..766 | 1060 | 100 | Plus |
X | 23527363 | X | 22431139..22431266 | 763..890 | 640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21840720..21841274 | 1..555 | 100 | -> | Plus |
chrX | 21841741..21841949 | 556..764 | 100 | -> | Plus |
chrX | 21842015..21842140 | 765..890 | 100 | -> | Plus |
chrX | 21842497..21843044 | 891..1438 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1122 | 228..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1122 | 228..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1122 | 228..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1122 | 228..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1122 | 228..1349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1541 | 1..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1541 | 1..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 6..1546 | 1..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 1..1541 | 1..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14621-RA | 6..1546 | 1..1541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22446049..22446174 | 765..890 | 100 | -> | Plus |
X | 22445775..22445983 | 556..764 | 100 | -> | Plus |
X | 22444754..22445308 | 1..555 | 100 | -> | Plus |
X | 22446531..22447181 | 891..1542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22446049..22446174 | 765..890 | 100 | -> | Plus |
X | 22445775..22445983 | 556..764 | 100 | -> | Plus |
X | 22444754..22445308 | 1..555 | 100 | -> | Plus |
X | 22446531..22447181 | 891..1542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22446049..22446174 | 765..890 | 100 | -> | Plus |
X | 22445775..22445983 | 556..764 | 100 | -> | Plus |
X | 22444754..22445308 | 1..555 | 100 | -> | Plus |
X | 22446531..22447181 | 891..1542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21846590..21847144 | 1..555 | 100 | -> | Plus |
arm_X | 21847611..21847819 | 556..764 | 100 | -> | Plus |
arm_X | 21847885..21848010 | 765..890 | 100 | -> | Plus |
arm_X | 21848367..21849017 | 891..1542 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 22429846..22430400 | 1..555 | 100 | -> | Plus |
X | 22430867..22431075 | 556..764 | 100 | -> | Plus |
X | 22431141..22431266 | 765..890 | 100 | -> | Plus |
X | 22431623..22432273 | 891..1542 | 99 | Plus |
Translation from 227 to 1348
> RE05288.pep MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT PGNSLLANGSGMPSGTATRLLFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20934-PA | 377 | GF20934-PA | 4..377 | 3..373 | 1731 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19741-PA | 373 | GG19741-PA | 1..373 | 1..373 | 1918 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17706-PA | 386 | GH17706-PA | 4..386 | 3..373 | 1561 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14621-PB | 373 | CG14621-PB | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PD | 373 | CG14621-PD | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PA | 373 | CG14621-PA | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PC | 260 | CG14621-PC | 1..260 | 114..373 | 1314 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15448-PA | 369 | GI15448-PA | 4..369 | 3..373 | 1593 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13292-PA | 378 | GL13292-PA | 4..378 | 3..373 | 1711 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13121-PA | 378 | GA13121-PA | 4..378 | 3..373 | 1711 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11727-PA | 373 | GM11727-PA | 1..373 | 1..373 | 1916 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17541-PA | 140 | GD17541-PA | 1..113 | 1..113 | 581 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19164-PA | 387 | GJ19164-PA | 4..387 | 3..373 | 1577 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16322-PA | 389 | GK16322-PA | 5..389 | 3..373 | 1603 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17936-PA | 373 | GE17936-PA | 1..373 | 1..373 | 1918 | 98.1 | Plus |
Translation from 227 to 1348
> RE05288.hyp MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT PGNSLLANGSGMPSGTATRLLFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14621-PB | 373 | CG14621-PB | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PD | 373 | CG14621-PD | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PA | 373 | CG14621-PA | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PC | 260 | CG14621-PC | 1..260 | 114..373 | 1314 | 100 | Plus |