Clone RE05288 Report

Search the DGRC for RE05288

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:52
Well:88
Vector:pFlc-1
Associated Gene/TranscriptCG14621-RA
Protein status:RE05288.pep: gold
Preliminary Size:1151
Sequenced Size:1558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14621 2002-01-01 Sim4 clustering to Release 2
CG14621 2003-01-01 Sim4 clustering to Release 3
CG14621 2003-02-10 Blastp of sequenced clone
CG14621 2008-04-29 Release 5.5 accounting
CG14621 2008-08-15 Release 5.9 accounting
CG14621 2008-12-18 5.12 accounting

Clone Sequence Records

RE05288.complete Sequence

1558 bp (1558 high quality bases) assembled on 2003-02-10

GenBank Submission: BT003539

> RE05288.complete
CTGGTAACACTGACAGAAAACAAAAAACAGACGACGTTTTAATAGACGAT
TTAAATTTTAAAAGAACAACAGGCGCAATGCAATAAGCCCCGCGTGTCGG
ATTGTCAGCACCATCAGCAGCTCCAGGACCAGGTCTTGCCACTTGCCCCT
CGCCCGTCGCCAACGATTCGCGGTAGAATCGGCACCGCACCTAAGCCACG
AGAGCACGGGCCAATCCCAGACGAAAAATGCTAGGCAAGCGGACTGGGTC
GCGGCACATAGCGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCT
CCTCCAGCAACAACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTT
CCGATGACCGTGACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGG
ACCCTTCTTCAACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTC
CCTACTATTACCGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCC
TCCGTCACCTCGCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCA
CACGGTCAAAGCCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTT
TTTTTGGTGAGAAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATT
ATCACCGGCGTGGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGAT
GGGCCTTATCAGCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACA
TTTTCTCAAAAAAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTG
CTGCATTTGCTTGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCT
TTACATGGACAGCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAG
ACTATCGAGTTATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTG
CAGAACATCATCGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTA
TGCGGTGGCCAGCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCC
TAATCCTGGGCAACCCAGTGACGTGGGTCAATTGCGTAGGCATGACGCTG
GCCATTGTGGGTGTGCTCTGCTACAATCGCGCCAAACAGCTTACGCGGGG
TCGCGAGCAACCGACACTGCCGCTGTCGCAGACTAGCTATGTCAAGTACT
CGCCGCTGGAGCAACAGGCAGATCCGTACTACCGGGGATCGGTCAACGGG
AAGCTATCCAATGGCTTGCACAGAACGCCCGGAAACAGTCTGCTGGCGAA
TGGCAGCGGAATGCCGAGCGGGACGGCAACGCGGCTACTATTTGTTTAGT
GTGTAGTTAGTGAATGTATCCAATAAGCGGGTTAGCTAAATAGTATTAAC
CTGTGACGACCACCATCCAAATTCCGACTCTCCCCTCTTTTATATATATA
AATATATATATGTATTTATATTATTATATTATATTTATATTTATATATTT
ATATATATATATATATAGTGTATATATTAAATATGTTTGACCAAAAAAAA
AAAAAAAA

RE05288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-RA 1786 CG14621-RA 108..1652 1..1545 7710 99.9 Plus
CG14621.a 1545 CG14621.a 1..1545 1..1541 7640 99.7 Plus
CG14621.c 1591 CG14621.c 96..1577 64..1545 7395 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21842497..21843147 891..1541 3255 100 Plus
chrX 22417052 chrX 21840720..21841274 1..555 2775 100 Plus
chrX 22417052 chrX 21841740..21841951 555..766 1060 100 Plus
chrX 22417052 chrX 21842013..21842140 763..890 640 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22446531..22447185 891..1545 3260 99.8 Plus
X 23542271 X 22444754..22445308 1..555 2775 100 Plus
X 23542271 X 22445774..22445985 555..766 1060 100 Plus
X 23542271 X 22446047..22446174 763..890 640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22431623..22432277 891..1545 3260 99.8 Plus
X 23527363 X 22429846..22430400 1..555 2775 100 Plus
X 23527363 X 22430866..22431077 555..766 1060 100 Plus
X 23527363 X 22431139..22431266 763..890 640 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:03:46 has no hits.

RE05288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:04:25 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21840720..21841274 1..555 100 -> Plus
chrX 21841741..21841949 556..764 100 -> Plus
chrX 21842015..21842140 765..890 100 -> Plus
chrX 21842497..21843044 891..1438 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:03 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 228..1349 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:17 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 228..1349 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:39:36 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 228..1349 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:24 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 228..1349 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:00 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 228..1349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:38 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:17 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:39:36 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 6..1546 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:24 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:00 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 6..1546 1..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:25 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
X 22446049..22446174 765..890 100 -> Plus
X 22445775..22445983 556..764 100 -> Plus
X 22444754..22445308 1..555 100 -> Plus
X 22446531..22447181 891..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:25 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
X 22446049..22446174 765..890 100 -> Plus
X 22445775..22445983 556..764 100 -> Plus
X 22444754..22445308 1..555 100 -> Plus
X 22446531..22447181 891..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:25 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
X 22446049..22446174 765..890 100 -> Plus
X 22445775..22445983 556..764 100 -> Plus
X 22444754..22445308 1..555 100 -> Plus
X 22446531..22447181 891..1542 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:39:36 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21846590..21847144 1..555 100 -> Plus
arm_X 21847611..21847819 556..764 100 -> Plus
arm_X 21847885..21848010 765..890 100 -> Plus
arm_X 21848367..21849017 891..1542 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:16 Download gff for RE05288.complete
Subject Subject Range Query Range Percent Splice Strand
X 22429846..22430400 1..555 100 -> Plus
X 22430867..22431075 556..764 100 -> Plus
X 22431141..22431266 765..890 100 -> Plus
X 22431623..22432273 891..1542 99   Plus

RE05288.pep Sequence

Translation from 227 to 1348

> RE05288.pep
MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL
CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW
KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV
TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL
FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL
SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN
RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT
PGNSLLANGSGMPSGTATRLLFV*

RE05288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20934-PA 377 GF20934-PA 4..377 3..373 1731 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19741-PA 373 GG19741-PA 1..373 1..373 1918 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17706-PA 386 GH17706-PA 4..386 3..373 1561 82.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-PB 373 CG14621-PB 1..373 1..373 1907 100 Plus
CG14621-PD 373 CG14621-PD 1..373 1..373 1907 100 Plus
CG14621-PA 373 CG14621-PA 1..373 1..373 1907 100 Plus
CG14621-PC 260 CG14621-PC 1..260 114..373 1314 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15448-PA 369 GI15448-PA 4..369 3..373 1593 86.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13292-PA 378 GL13292-PA 4..378 3..373 1711 90.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13121-PA 378 GA13121-PA 4..378 3..373 1711 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11727-PA 373 GM11727-PA 1..373 1..373 1916 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17541-PA 140 GD17541-PA 1..113 1..113 581 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19164-PA 387 GJ19164-PA 4..387 3..373 1577 83 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16322-PA 389 GK16322-PA 5..389 3..373 1603 85.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17936-PA 373 GE17936-PA 1..373 1..373 1918 98.1 Plus

RE05288.hyp Sequence

Translation from 227 to 1348

> RE05288.hyp
MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL
CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW
KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV
TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL
FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL
SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN
RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT
PGNSLLANGSGMPSGTATRLLFV*

RE05288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-PB 373 CG14621-PB 1..373 1..373 1907 100 Plus
CG14621-PD 373 CG14621-PD 1..373 1..373 1907 100 Plus
CG14621-PA 373 CG14621-PA 1..373 1..373 1907 100 Plus
CG14621-PC 260 CG14621-PC 1..260 114..373 1314 100 Plus