Clone RE05302 Report

Search the DGRC for RE05302

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:53
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG4860-RA
Protein status:RE05302.pep: gold
Preliminary Size:1379
Sequenced Size:1408

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4860 2002-01-01 Sim4 clustering to Release 2
CG4860 2002-04-26 Blastp of sequenced clone
CG4860 2008-04-29 Release 5.5 accounting
CG4860 2008-08-15 Release 5.9 accounting
CG4860 2008-12-18 5.12 accounting

Clone Sequence Records

RE05302.complete Sequence

1408 bp (1408 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113386

> RE05302.complete
AGTTGGCGACGGAATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGGGTC
AACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAACCGG
GGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCAGAA
GACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGACACC
ACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGAGAA
CTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGGATT
GGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTGACG
CCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCAGTG
CAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTACAC
CCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACGGAT
CGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGCTAC
CAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAGCGG
GGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAATCA
CTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAGAAG
GAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCTGGA
GGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATGGCT
TCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCCGCC
CAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTATTC
GCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCATCC
AGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTGCTA
ACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAAGGA
GGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTGCCC
ACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTGCCT
GCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGGAAC
CTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAATTGG
GAAAGGAGTGAAAGCCATTGTTGGTTTTTCTTTATTACTGCTGCCAAACC
AATCAGAATTCTTGCTTTTACACTTGTTGTGTATGTAAATTAGTTTATCT
ATGCCAGACAAATGCATTTAATAAAGTATATTTAAACAAATGAAAAAAAA
AAAAAAAA

RE05302.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1559 CG4860-RA 159..1553 1..1395 6960 99.9 Plus
Arc42-RA 1506 Arc42-RA 1142..1327 1042..1227 315 77.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8045272..8046377 1392..287 5455 99.5 Minus
chr3R 27901430 chr3R 8046504..8046747 290..47 1205 99.6 Minus
chr3R 27901430 chr3R 15702719..15703146 800..1227 370 72.4 Plus
chr3R 27901430 chr3R 8046806..8046854 49..1 245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12219878..12220986 1395..287 5545 100 Minus
3R 32079331 3R 12221113..12221356 290..47 1205 99.6 Minus
3R 32079331 3R 19878792..19879219 800..1227 370 72.4 Plus
3R 32079331 3R 12221415..12221463 49..1 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11960709..11961817 1395..287 5545 100 Minus
3R 31820162 3R 11961944..11962187 290..47 1205 99.5 Minus
3R 31820162 3R 19619865..19620050 1042..1227 315 77.9 Plus
3R 31820162 3R 11962246..11962294 49..1 245 100 Minus
Blast to na_te.dros performed 2019-03-15 18:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 3347..3465 1389..1275 116 60 Minus

RE05302.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:00:09 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8045272..8046376 288..1392 99 <- Minus
chr3R 8046507..8046746 48..287 99 <- Minus
chr3R 8046808..8046854 1..47 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:04 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 14..1261 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:20 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 14..1261 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:38:42 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 14..1261 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:38 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 14..1261 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:14 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 14..1261 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:48 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:19 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:38:42 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 2..1393 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:38 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:14 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 2..1393 1..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:09 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219881..12220985 288..1392 100 <- Minus
3R 12221116..12221355 48..287 99 <- Minus
3R 12221417..12221463 1..47 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:09 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219881..12220985 288..1392 100 <- Minus
3R 12221116..12221355 48..287 99 <- Minus
3R 12221417..12221463 1..47 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:09 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219881..12220985 288..1392 100 <- Minus
3R 12221116..12221355 48..287 99 <- Minus
3R 12221417..12221463 1..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:38:42 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8045603..8046707 288..1392 100 <- Minus
arm_3R 8046838..8047077 48..287 99 <- Minus
arm_3R 8047139..8047185 1..47 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:31 Download gff for RE05302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11960712..11961816 288..1392 100 <- Minus
3R 11961947..11962186 48..287 99 <- Minus
3R 11962248..11962294 1..47 100   Minus

RE05302.hyp Sequence

Translation from 0 to 1260

> RE05302.hyp
VGDGMQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQK
TCREFANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGL
DYQAYAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYT
QGEHIAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASG
GIVFATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLE
DVHVPRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYS
QKRVAFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKE
AAMAKLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGT
SEIQRIVIANAVLRELGKE*

RE05302.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 415 CG4860-PA 1..415 5..419 2101 100 Plus
Arc42-PA 405 CG4703-PA 19..402 33..415 1284 64.1 Plus
CG3902-PA 414 CG3902-PA 34..411 38..415 698 37.5 Plus
CG12262-PA 419 CG12262-PA 36..408 40..409 605 37.5 Plus
CG6638-PA 420 CG6638-PA 39..418 41..415 589 37 Plus

RE05302.pep Sequence

Translation from 13 to 1260

> RE05302.pep
MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE
FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA
YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH
IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF
ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV
PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV
AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA
KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ
RIVIANAVLRELGKE*

RE05302.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17739-PA 418 GF17739-PA 1..418 1..415 1977 88.5 Plus
Dana\GF17623-PA 405 GF17623-PA 19..402 29..411 1334 63.8 Plus
Dana\GF10801-PA 415 GF10801-PA 35..412 34..411 719 38 Plus
Dana\GF10656-PA 420 GF10656-PA 36..408 36..405 636 39 Plus
Dana\GF10158-PA 419 GF10158-PA 35..417 34..415 604 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17152-PA 415 GG17152-PA 1..415 1..415 2087 94.5 Plus
Dere\Arc42-PA 405 GG23560-PA 19..402 29..411 1340 64.1 Plus
Dere\GG13447-PA 414 GG13447-PA 34..411 34..411 718 37.5 Plus
Dere\GG14445-PA 419 GG14445-PA 36..408 36..405 622 38.2 Plus
Dere\GG15072-PA 420 GG15072-PA 36..418 34..415 602 36.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15455-PA 336 GH15455-PA 1..332 80..410 1507 83.7 Plus
Dgri\GH16400-PA 406 GH16400-PA 19..403 29..411 1333 63.1 Plus
Dgri\GH16965-PA 414 GH16965-PA 37..412 37..412 722 38.2 Plus
Dgri\GH22516-PA 424 GH22516-PA 40..422 34..415 637 37.5 Plus
Dgri\GH14704-PA 419 GH14704-PA 35..407 36..405 623 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 415 CG4860-PA 1..415 1..415 2101 100 Plus
Arc42-PA 405 CG4703-PA 19..402 29..411 1284 64.1 Plus
CG3902-PA 414 CG3902-PA 34..411 34..411 698 37.5 Plus
CG12262-PA 419 CG12262-PA 36..408 36..405 605 37.5 Plus
CG6638-PA 420 CG6638-PA 39..418 37..411 589 37 Plus
CG7461-PC 627 CG7461-PC 109..446 77..405 489 35.5 Plus
CG7461-PB 627 CG7461-PB 109..446 77..405 489 35.5 Plus
CG9547-PA 419 CG9547-PA 41..411 37..408 419 29.7 Plus
Egm-PA 639 CG9006-PA 122..439 77..387 161 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22465-PA 407 GI22465-PA 1..405 1..412 1791 81.6 Plus
Dmoj\GI22432-PA 406 GI22432-PA 19..403 29..411 1333 63.6 Plus
Dmoj\GI11829-PA 414 GI11829-PA 34..412 34..412 725 38.4 Plus
Dmoj\GI12421-PA 421 GI12421-PA 37..419 34..415 629 37.2 Plus
Dmoj\GI12250-PA 420 GI12250-PA 35..407 36..405 621 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21568-PA 413 GL21568-PA 1..413 1..415 1912 85.6 Plus
Dper\GL12205-PA 405 GL12205-PA 19..402 29..411 1354 64.3 Plus
Dper\GL25250-PA 415 GL25250-PA 35..412 34..411 724 38.5 Plus
Dper\GL25095-PA 419 GL25095-PA 36..408 36..405 621 38.5 Plus
Dper\GL10298-PA 420 GL10298-PA 36..418 34..415 619 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18485-PA 411 GA18485-PA 1..411 1..415 1931 86.3 Plus
Dpse\Arc42-PA 405 GA18369-PA 19..402 29..411 1354 64.3 Plus
Dpse\GA17761-PA 415 GA17761-PA 35..412 34..411 724 38.5 Plus
Dpse\GA11516-PA 419 GA11516-PA 36..408 36..405 621 38.5 Plus
Dpse\GA19744-PA 420 GA19744-PA 36..418 34..415 619 37.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26034-PA 420 GM26034-PA 1..420 1..415 2121 95.7 Plus
Dsec\GM26869-PA 405 GM26869-PA 1..402 1..411 1346 60.9 Plus
Dsec\GM16092-PA 357 GM16092-PA 19..354 29..411 1114 56.5 Plus
Dsec\GM24997-PA 419 GM24997-PA 36..408 36..405 620 38.2 Plus
Dsec\GM14915-PA 398 GM14915-PA 34..395 34..411 615 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20592-PA 415 GD20592-PA 1..415 1..415 2148 97.1 Plus
Dsim\GD19319-PA 405 GD19319-PA 19..402 29..411 1343 64.1 Plus
Dsim\GD12323-PA 420 GD12323-PA 34..417 34..411 705 37.4 Plus
Dsim\GD14030-PA 439 GD14030-PA 36..408 36..405 618 38.2 Plus
Dsim\GD12977-PA 420 GD12977-PA 36..418 34..415 609 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10063-PA 408 GJ10063-PA 1..406 1..412 1775 81.1 Plus
Dvir\GJ10995-PA 406 GJ10995-PA 19..403 29..411 1362 64.9 Plus
Dvir\GJ13529-PA 414 GJ13529-PA 34..412 34..412 723 38.4 Plus
Dvir\GJ11482-PA 420 GJ11482-PA 35..407 36..405 635 39.3 Plus
Dvir\GJ19560-PA 420 GJ19560-PA 35..407 36..405 635 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11564-PA 384 GK11564-PA 1..381 33..411 1750 81.9 Plus
Dwil\Arc42-PA 405 GK22361-PA 19..402 29..411 1330 62.8 Plus
Dwil\GK20439-PA 417 GK20439-PA 34..414 34..411 711 39.1 Plus
Dwil\GK23895-PA 420 GK23895-PA 35..407 36..405 636 38.8 Plus
Dwil\GK20558-PA 423 GK20558-PA 40..421 34..415 630 38.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24541-PA 415 GE24541-PA 1..415 1..415 2081 94.2 Plus
Dyak\GE25631-PA 405 GE25631-PA 19..402 29..411 1338 63.8 Plus
Dyak\GE22549-PA 414 GE22549-PA 34..411 34..411 715 37.7 Plus
Dyak\GE22545-PA 414 GE22545-PA 34..411 34..411 715 37.7 Plus
Dyak\GE21636-PA 419 GE21636-PA 36..408 36..405 621 38.2 Plus