BDGP Sequence Production Resources |
Search the DGRC for RE05302
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 53 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4860-RA |
Protein status: | RE05302.pep: gold |
Preliminary Size: | 1379 |
Sequenced Size: | 1408 |
Gene | Date | Evidence |
---|---|---|
CG4860 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4860 | 2002-04-26 | Blastp of sequenced clone |
CG4860 | 2008-04-29 | Release 5.5 accounting |
CG4860 | 2008-08-15 | Release 5.9 accounting |
CG4860 | 2008-12-18 | 5.12 accounting |
1408 bp (1408 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113386
> RE05302.complete AGTTGGCGACGGAATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGGGTC AACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAACCGG GGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCAGAA GACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGACACC ACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGAGAA CTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGGATT GGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTGACG CCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCAGTG CAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTACAC CCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACGGAT CGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGCTAC CAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAGCGG GGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAATCA CTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAGAAG GAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCTGGA GGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATGGCT TCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCCGCC CAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTATTC GCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCATCC AGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTGCTA ACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAAGGA GGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTGCCC ACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTGCCT GCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGGAAC CTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAATTGG GAAAGGAGTGAAAGCCATTGTTGGTTTTTCTTTATTACTGCTGCCAAACC AATCAGAATTCTTGCTTTTACACTTGTTGTGTATGTAAATTAGTTTATCT ATGCCAGACAAATGCATTTAATAAAGTATATTTAAACAAATGAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8045272..8046377 | 1392..287 | 5455 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 8046504..8046747 | 290..47 | 1205 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 15702719..15703146 | 800..1227 | 370 | 72.4 | Plus |
chr3R | 27901430 | chr3R | 8046806..8046854 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12219878..12220986 | 1395..287 | 5545 | 100 | Minus |
3R | 32079331 | 3R | 12221113..12221356 | 290..47 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 19878792..19879219 | 800..1227 | 370 | 72.4 | Plus |
3R | 32079331 | 3R | 12221415..12221463 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11960709..11961817 | 1395..287 | 5545 | 100 | Minus |
3R | 31820162 | 3R | 11961944..11962187 | 290..47 | 1205 | 99.5 | Minus |
3R | 31820162 | 3R | 19619865..19620050 | 1042..1227 | 315 | 77.9 | Plus |
3R | 31820162 | 3R | 11962246..11962294 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 3347..3465 | 1389..1275 | 116 | 60 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8045272..8046376 | 288..1392 | 99 | <- | Minus |
chr3R | 8046507..8046746 | 48..287 | 99 | <- | Minus |
chr3R | 8046808..8046854 | 1..47 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1248 | 14..1261 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1248 | 14..1261 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1248 | 14..1261 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1248 | 14..1261 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1248 | 14..1261 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 2..1393 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4860-RA | 2..1393 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12219881..12220985 | 288..1392 | 100 | <- | Minus |
3R | 12221116..12221355 | 48..287 | 99 | <- | Minus |
3R | 12221417..12221463 | 1..47 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12219881..12220985 | 288..1392 | 100 | <- | Minus |
3R | 12221116..12221355 | 48..287 | 99 | <- | Minus |
3R | 12221417..12221463 | 1..47 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12219881..12220985 | 288..1392 | 100 | <- | Minus |
3R | 12221116..12221355 | 48..287 | 99 | <- | Minus |
3R | 12221417..12221463 | 1..47 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8045603..8046707 | 288..1392 | 100 | <- | Minus |
arm_3R | 8046838..8047077 | 48..287 | 99 | <- | Minus |
arm_3R | 8047139..8047185 | 1..47 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11960712..11961816 | 288..1392 | 100 | <- | Minus |
3R | 11961947..11962186 | 48..287 | 99 | <- | Minus |
3R | 11962248..11962294 | 1..47 | 100 | Minus |
Translation from 0 to 1260
> RE05302.hyp VGDGMQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQK TCREFANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGL DYQAYAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYT QGEHIAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASG GIVFATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLE DVHVPRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYS QKRVAFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKE AAMAKLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGT SEIQRIVIANAVLRELGKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4860-PA | 415 | CG4860-PA | 1..415 | 5..419 | 2101 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 19..402 | 33..415 | 1284 | 64.1 | Plus |
CG3902-PA | 414 | CG3902-PA | 34..411 | 38..415 | 698 | 37.5 | Plus |
CG12262-PA | 419 | CG12262-PA | 36..408 | 40..409 | 605 | 37.5 | Plus |
CG6638-PA | 420 | CG6638-PA | 39..418 | 41..415 | 589 | 37 | Plus |
Translation from 13 to 1260
> RE05302.pep MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ RIVIANAVLRELGKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17739-PA | 418 | GF17739-PA | 1..418 | 1..415 | 1977 | 88.5 | Plus |
Dana\GF17623-PA | 405 | GF17623-PA | 19..402 | 29..411 | 1334 | 63.8 | Plus |
Dana\GF10801-PA | 415 | GF10801-PA | 35..412 | 34..411 | 719 | 38 | Plus |
Dana\GF10656-PA | 420 | GF10656-PA | 36..408 | 36..405 | 636 | 39 | Plus |
Dana\GF10158-PA | 419 | GF10158-PA | 35..417 | 34..415 | 604 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17152-PA | 415 | GG17152-PA | 1..415 | 1..415 | 2087 | 94.5 | Plus |
Dere\Arc42-PA | 405 | GG23560-PA | 19..402 | 29..411 | 1340 | 64.1 | Plus |
Dere\GG13447-PA | 414 | GG13447-PA | 34..411 | 34..411 | 718 | 37.5 | Plus |
Dere\GG14445-PA | 419 | GG14445-PA | 36..408 | 36..405 | 622 | 38.2 | Plus |
Dere\GG15072-PA | 420 | GG15072-PA | 36..418 | 34..415 | 602 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15455-PA | 336 | GH15455-PA | 1..332 | 80..410 | 1507 | 83.7 | Plus |
Dgri\GH16400-PA | 406 | GH16400-PA | 19..403 | 29..411 | 1333 | 63.1 | Plus |
Dgri\GH16965-PA | 414 | GH16965-PA | 37..412 | 37..412 | 722 | 38.2 | Plus |
Dgri\GH22516-PA | 424 | GH22516-PA | 40..422 | 34..415 | 637 | 37.5 | Plus |
Dgri\GH14704-PA | 419 | GH14704-PA | 35..407 | 36..405 | 623 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4860-PA | 415 | CG4860-PA | 1..415 | 1..415 | 2101 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 19..402 | 29..411 | 1284 | 64.1 | Plus |
CG3902-PA | 414 | CG3902-PA | 34..411 | 34..411 | 698 | 37.5 | Plus |
CG12262-PA | 419 | CG12262-PA | 36..408 | 36..405 | 605 | 37.5 | Plus |
CG6638-PA | 420 | CG6638-PA | 39..418 | 37..411 | 589 | 37 | Plus |
CG7461-PC | 627 | CG7461-PC | 109..446 | 77..405 | 489 | 35.5 | Plus |
CG7461-PB | 627 | CG7461-PB | 109..446 | 77..405 | 489 | 35.5 | Plus |
CG9547-PA | 419 | CG9547-PA | 41..411 | 37..408 | 419 | 29.7 | Plus |
Egm-PA | 639 | CG9006-PA | 122..439 | 77..387 | 161 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22465-PA | 407 | GI22465-PA | 1..405 | 1..412 | 1791 | 81.6 | Plus |
Dmoj\GI22432-PA | 406 | GI22432-PA | 19..403 | 29..411 | 1333 | 63.6 | Plus |
Dmoj\GI11829-PA | 414 | GI11829-PA | 34..412 | 34..412 | 725 | 38.4 | Plus |
Dmoj\GI12421-PA | 421 | GI12421-PA | 37..419 | 34..415 | 629 | 37.2 | Plus |
Dmoj\GI12250-PA | 420 | GI12250-PA | 35..407 | 36..405 | 621 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21568-PA | 413 | GL21568-PA | 1..413 | 1..415 | 1912 | 85.6 | Plus |
Dper\GL12205-PA | 405 | GL12205-PA | 19..402 | 29..411 | 1354 | 64.3 | Plus |
Dper\GL25250-PA | 415 | GL25250-PA | 35..412 | 34..411 | 724 | 38.5 | Plus |
Dper\GL25095-PA | 419 | GL25095-PA | 36..408 | 36..405 | 621 | 38.5 | Plus |
Dper\GL10298-PA | 420 | GL10298-PA | 36..418 | 34..415 | 619 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18485-PA | 411 | GA18485-PA | 1..411 | 1..415 | 1931 | 86.3 | Plus |
Dpse\Arc42-PA | 405 | GA18369-PA | 19..402 | 29..411 | 1354 | 64.3 | Plus |
Dpse\GA17761-PA | 415 | GA17761-PA | 35..412 | 34..411 | 724 | 38.5 | Plus |
Dpse\GA11516-PA | 419 | GA11516-PA | 36..408 | 36..405 | 621 | 38.5 | Plus |
Dpse\GA19744-PA | 420 | GA19744-PA | 36..418 | 34..415 | 619 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26034-PA | 420 | GM26034-PA | 1..420 | 1..415 | 2121 | 95.7 | Plus |
Dsec\GM26869-PA | 405 | GM26869-PA | 1..402 | 1..411 | 1346 | 60.9 | Plus |
Dsec\GM16092-PA | 357 | GM16092-PA | 19..354 | 29..411 | 1114 | 56.5 | Plus |
Dsec\GM24997-PA | 419 | GM24997-PA | 36..408 | 36..405 | 620 | 38.2 | Plus |
Dsec\GM14915-PA | 398 | GM14915-PA | 34..395 | 34..411 | 615 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20592-PA | 415 | GD20592-PA | 1..415 | 1..415 | 2148 | 97.1 | Plus |
Dsim\GD19319-PA | 405 | GD19319-PA | 19..402 | 29..411 | 1343 | 64.1 | Plus |
Dsim\GD12323-PA | 420 | GD12323-PA | 34..417 | 34..411 | 705 | 37.4 | Plus |
Dsim\GD14030-PA | 439 | GD14030-PA | 36..408 | 36..405 | 618 | 38.2 | Plus |
Dsim\GD12977-PA | 420 | GD12977-PA | 36..418 | 34..415 | 609 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10063-PA | 408 | GJ10063-PA | 1..406 | 1..412 | 1775 | 81.1 | Plus |
Dvir\GJ10995-PA | 406 | GJ10995-PA | 19..403 | 29..411 | 1362 | 64.9 | Plus |
Dvir\GJ13529-PA | 414 | GJ13529-PA | 34..412 | 34..412 | 723 | 38.4 | Plus |
Dvir\GJ11482-PA | 420 | GJ11482-PA | 35..407 | 36..405 | 635 | 39.3 | Plus |
Dvir\GJ19560-PA | 420 | GJ19560-PA | 35..407 | 36..405 | 635 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11564-PA | 384 | GK11564-PA | 1..381 | 33..411 | 1750 | 81.9 | Plus |
Dwil\Arc42-PA | 405 | GK22361-PA | 19..402 | 29..411 | 1330 | 62.8 | Plus |
Dwil\GK20439-PA | 417 | GK20439-PA | 34..414 | 34..411 | 711 | 39.1 | Plus |
Dwil\GK23895-PA | 420 | GK23895-PA | 35..407 | 36..405 | 636 | 38.8 | Plus |
Dwil\GK20558-PA | 423 | GK20558-PA | 40..421 | 34..415 | 630 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24541-PA | 415 | GE24541-PA | 1..415 | 1..415 | 2081 | 94.2 | Plus |
Dyak\GE25631-PA | 405 | GE25631-PA | 19..402 | 29..411 | 1338 | 63.8 | Plus |
Dyak\GE22549-PA | 414 | GE22549-PA | 34..411 | 34..411 | 715 | 37.7 | Plus |
Dyak\GE22545-PA | 414 | GE22545-PA | 34..411 | 34..411 | 715 | 37.7 | Plus |
Dyak\GE21636-PA | 419 | GE21636-PA | 36..408 | 36..405 | 621 | 38.2 | Plus |