BDGP Sequence Production Resources |
Search the DGRC for RE05342
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 53 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | lin-28-RA |
Protein status: | RE05342.pep: gold |
Preliminary Size: | 546 |
Sequenced Size: | 1165 |
Gene | Date | Evidence |
---|---|---|
CG17334 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17334 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17334 | 2003-08-05 | Blastp of sequenced clone |
lin-28 | 2008-04-29 | Release 5.5 accounting |
lin-28 | 2008-08-15 | Release 5.9 accounting |
lin-28 | 2008-12-18 | 5.12 accounting |
1165 bp (1165 high quality bases) assembled on 2003-08-05
GenBank Submission: AY118360
> RE05342.complete AAACGCAACGCGGAGTCAGTGTGACGAAGTGCGTCGTGCGCAGCGGCAGC GTTTTCCTAATTTCCCCTTCGCTGAACCCAAAAATTCGAGAAAGTGCTGT AGCTGTGTTAGTGCGGGCAGTGAAAGATACAGATACAAATACAGATACGG ATCTTTGGCCACATGTCTGTTCGTTGGCAGGAAAAACATGCATTTGCAGT GAAGTTTTAAGCAACATTGAATTTTGGAGCGAGTAATCAAACAATTGAAG TGGATTTTAAACTAAGAAAAATAAACTAAAAACCCAAGAAGTCAGCATGG AGAACGTACAGCTGGAAAATGGCTTGGAAAGGAGGACCACCAGCCAGAGT TCCACTTCATCAGCGAATCCGGCAAATCTTGCGAGTCCCACCGAGGAATG CGGTTGTGTGCGACTGGGCAAATGCAAATGGTTCAACGTGGCCAAGGGAT GGGGCTTCCTTACACCCAACGACGGCGGCCAGGAGGTGTTCGTCCATCAG AGCGTCATCCAGATGTCAGGTTTCCGATCACTGGGCGAGCAGGAGGAGGT GGAATTCGAGTGCCAGCGCACGTCGCGCGGATTGGAGGCCACCAGGGTGT CCAGCAGGCATGGCGGTAGCTGCCAAGGCAGCACCTACAGGCCGCGAATA AATCGCCGGACTCGCCGCATGCGCTGCTACAACTGCGGCGAATTCGCCAA TCACATTGCCTCCGAATGCGCTTTGGGTCCTCAGCCGAAGCGCTGTCATC GCTGCCGTGGAGAAGACCATCTCCATGCCGACTGCCCGCACAAGAATGTG ACCCAAAGCCACAGTAATAGCAAAAGCATAAGCAACAATAGCAGCAGCAG TGCAGCCCAAGAGAAGAGCGAGGAGGCCACCTAGGAAGTCCTTGGATCTT GGACTGGTAGTTGGAAGTTAGAAACTTCCTTGACAAGTACAAAATGGAAA TCTAAGAAAAAACACGCATCAAATCAAAGAAACCCACGTACAACAAAACT AGCTACTACACTTAGATATTAGCGGGAAGAGACGCGCCCCGAAAACCATC CTATCCTAAGTTTATTTTCTATTTTAACATTATTTTCTAGGAACCATAGT TGCTAAGGTTTTTCACTAGATCCCAAGTAAACGAATTAAGCTAGAGAGCA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lin-28-RA | 1436 | lin-28-RA | 150..1299 | 1..1150 | 5750 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5649599..5649947 | 800..1149 | 1655 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 5647244..5647611 | 1..363 | 1640 | 97 | Plus |
chr3L | 24539361 | chr3L | 5649167..5649317 | 499..649 | 755 | 100 | Plus |
chr3L | 24539361 | chr3L | 5649387..5649537 | 650..800 | 755 | 100 | Plus |
chr3L | 24539361 | chr3L | 5648880..5649019 | 361..500 | 700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5654684..5655046 | 1..363 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 5657035..5657385 | 800..1150 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 5656603..5656753 | 499..649 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656823..5656973 | 650..800 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656316..5656455 | 361..500 | 700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5647784..5648146 | 1..363 | 1815 | 100 | Plus |
3L | 28103327 | 3L | 5650135..5650485 | 800..1150 | 1755 | 100 | Plus |
3L | 28103327 | 3L | 5649923..5650073 | 650..800 | 755 | 100 | Plus |
3L | 28103327 | 3L | 5649703..5649853 | 499..649 | 755 | 100 | Plus |
3L | 28103327 | 3L | 5649416..5649555 | 361..500 | 700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 790..850 | 124 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2364 | 807..856 | 117 | 72.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 815..856 | 113 | 76.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5647244..5647611 | 1..363 | 97 | -> | Plus |
chr3L | 5648883..5649019 | 364..500 | 100 | -> | Plus |
chr3L | 5649169..5649317 | 501..649 | 100 | -> | Plus |
chr3L | 5649387..5649537 | 650..800 | 100 | -> | Plus |
chr3L | 5649600..5649947 | 801..1149 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 1..588 | 297..884 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 1..588 | 297..884 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 1..588 | 297..884 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 1..588 | 297..884 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 1..588 | 297..884 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 2..1150 | 1..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 2..1150 | 1..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 4..1152 | 1..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 2..1150 | 1..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lin-28-RA | 4..1152 | 1..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5656823..5656973 | 650..800 | 100 | -> | Plus |
3L | 5657036..5657384 | 801..1149 | 100 | Plus | |
3L | 5654684..5655046 | 1..363 | 100 | -> | Plus |
3L | 5656319..5656455 | 364..500 | 100 | -> | Plus |
3L | 5656605..5656753 | 501..649 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5656823..5656973 | 650..800 | 100 | -> | Plus |
3L | 5657036..5657384 | 801..1149 | 100 | Plus | |
3L | 5654684..5655046 | 1..363 | 100 | -> | Plus |
3L | 5656319..5656455 | 364..500 | 100 | -> | Plus |
3L | 5656605..5656753 | 501..649 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5656823..5656973 | 650..800 | 100 | -> | Plus |
3L | 5657036..5657384 | 801..1149 | 100 | Plus | |
3L | 5654684..5655046 | 1..363 | 100 | -> | Plus |
3L | 5656319..5656455 | 364..500 | 100 | -> | Plus |
3L | 5656605..5656753 | 501..649 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5647784..5648146 | 1..363 | 100 | -> | Plus |
arm_3L | 5649419..5649555 | 364..500 | 100 | -> | Plus |
arm_3L | 5649705..5649853 | 501..649 | 100 | -> | Plus |
arm_3L | 5649923..5650073 | 650..800 | 100 | -> | Plus |
arm_3L | 5650136..5650484 | 801..1149 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5647784..5648146 | 1..363 | 100 | -> | Plus |
3L | 5649419..5649555 | 364..500 | 100 | -> | Plus |
3L | 5649705..5649853 | 501..649 | 100 | -> | Plus |
3L | 5649923..5650073 | 650..800 | 100 | -> | Plus |
3L | 5650136..5650484 | 801..1149 | 100 | Plus |
Translation from 296 to 883
> RE05342.pep MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10852-PA | 347 | GF10852-PA | 50..140 | 29..114 | 158 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16919-PA | 345 | GH16919-PA | 36..155 | 28..134 | 165 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
lin-28-PA | 195 | CG17334-PA | 1..195 | 1..195 | 1052 | 100 | Plus |
yps-PB | 340 | CG5654-PB | 51..150 | 29..123 | 152 | 38 | Plus |
yps-PA | 352 | CG5654-PA | 51..150 | 29..123 | 152 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13673-PA | 335 | GI13673-PA | 35..125 | 29..114 | 154 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15684-PA | 335 | GL15684-PA | 38..146 | 29..124 | 164 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14466-PA | 192 | GA14466-PA | 1..185 | 1..180 | 666 | 78 | Plus |
Dpse\GA23502-PA | 335 | GA23502-PA | 38..146 | 29..124 | 164 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24682-PA | 1378 | GM24682-PA | 51..159 | 29..124 | 152 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12750-PA | 352 | GD12750-PA | 51..141 | 29..114 | 160 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14010-PA | 340 | GJ14010-PA | 35..125 | 29..114 | 155 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16710-PA | 344 | GK16710-PA | 36..126 | 29..114 | 157 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20150-PA | 353 | GE20150-PA | 52..142 | 29..114 | 160 | 39.6 | Plus |
Translation from 296 to 883
> RE05342.hyp MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEAT*