Clone RE05559 Report

Search the DGRC for RE05559

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:55
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG13826-RA
Protein status:RE05559.pep: wuzgold
Preliminary Size:300
Sequenced Size:1238

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13826 2001-12-14 Blastp of sequenced clone
CG13826 2002-01-01 Sim4 clustering to Release 2
CG13826 2003-01-01 Sim4 clustering to Release 3
CG13826 2008-04-29 Release 5.5 accounting
CG13826 2008-08-15 Release 5.9 accounting
CG13826 2008-12-18 5.12 accounting

Clone Sequence Records

RE05559.complete Sequence

1238 bp (1238 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070954

> RE05559.complete
AGTGTTTTTTGAACAGCCGTTCAGTGAATTACAATCGACCAGCCATTCGC
TCGCTTGCTCACTTATCGTACCCCCCCCCCCCTGGCCACCGCTCTGTTTG
CCACCCAACCAGCTGATATTGTGGATACTCTTAAGTGTACTACATGTCGT
ATACGTAATATTCGACAAAGCTCTCTTTTTATCGAGCAAGTGTTTTGAGC
GTGGCGCGCTTTTCCATATAAAATCAAAACAAAAAACGTAGTTCTAAAGT
TGCAGGTACCAAGCGTAGTTGACATATTGACTCATCACCATTTGTGCCAG
CTGATAAGCAATAATGATCGACTTAGAGGATCTGCCTCGGCTGCAATCCT
TGTCCCCGGCGAAGGACATCGAATATACCTACCACCAGACCCAATTGCAG
CTGAATCCGAAGAAGAAGGTCACCGTCCGGGTGCCCATTGGACCACCCTC
GAAGTTGAGTAAGCTGATTAAGCCCACGGTGGCTTCCACGCCCGCTGTAC
TGGCCAAGCCAACGCCATCCATCACCCAATCGACGACGCCAGGTAACGCC
AAGACCAACATTTGGAAAGGTGGCTTCCATTTTACCAATCTGGTAAGTAT
TGAAAGGCTTCGGTGTTAATTACTTTATCCAAATGCCAGCACAAATGTTC
CCAGTTCAGAACGCAATATATCTATAAATTACCCCCATCAATCTAAATTA
ATTTTTATGAGCAGGTCTTTTAGATAGATTGATAGTCTTCTAGCTATATT
TTGAATTACACGTTCTGAATAGTGTGGCTATCTGTTTTATTGAGCAAGTC
TAATACAAATGTATCCATTTGTGATATCAATAGCTAACGGAAGTTATTGT
TAAGATATTTGTATTTTTGCATGCATGTAGAATATCAATATCAATATCAT
GAAAAAAAATTATTTTAAATTAATATTAAGGAAATATAAAACTATATATA
TCCCTTTATTTTTAATTTTAATACAAATTTCAACTTTGTTATGTAGAACT
AGTTAAAAAAATGACTAATGCAAATTAACTGAAAAATTTGCATGGACACG
TGTCAAAAGCTTATAAGCTTACACCATATCTACATAAAATTGCAATAGCC
ACCATGTCTACATAAGTTACTCTTAGGGAAAATATAAATATGTTCTTTAT
ATTCTTAAGATATTCTTTCTAAAAACTAAATCTAGAAATAAAAGGTAGGT
AATAAAGATACATTTGTAACCGAAAAAAAAAAAAAAAA

RE05559.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13826-RA 1225 CG13826-RA 1..1225 1..1225 6125 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19045576..19046531 1222..267 4780 100 Minus
chr3R 27901430 chr3R 19049850..19050117 268..1 1340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23222164..23223122 1225..267 4795 100 Minus
3R 32079331 3R 23226441..23226708 268..1 1340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22962995..22963953 1225..267 4795 100 Minus
3R 31820162 3R 22967272..22967539 268..1 1340 100 Minus
Blast to na_te.dros performed 2019-03-15 17:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 903..1010 830..936 141 62.7 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1101..1270 1049..1212 113 55.9 Plus

RE05559.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:37:18 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19045576..19046529 269..1222 100 <- Minus
chr3R 19049850..19050117 1..268 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:19 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..306 314..619 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:38 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..306 314..619 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:41:42 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 1..287 314..603 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:16 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..306 314..619 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:42 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 1..287 314..603 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:51 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:38 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:41:42 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 4..603 1..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:16 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
CG13826-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:42 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
cnc-RI 4..603 1..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:37:18 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23226441..23226708 1..268 100   Minus
3R 23222167..23223120 269..1222 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:37:18 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23226441..23226708 1..268 100   Minus
3R 23222167..23223120 269..1222 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:37:18 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23226441..23226708 1..268 100   Minus
3R 23222167..23223120 269..1222 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:41:42 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19047889..19048842 269..1222 100 <- Minus
arm_3R 19052163..19052430 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:09 Download gff for RE05559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22962998..22963951 269..1222 100 <- Minus
3R 22967272..22967539 1..268 100   Minus

RE05559.hyp Sequence

Translation from 313 to 618

> RE05559.hyp
MIDLEDLPRLQSLSPAKDIEYTYHQTQLQLNPKKKVTVRVPIGPPSKLSK
LIKPTVASTPAVLAKPTPSITQSTTPGNAKTNIWKGGFHFTNLVSIERLR
C*

RE05559.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-PN 1133 CG43286-PN 1..95 1..95 485 98.9 Plus
cnc-PM 1133 CG43286-PM 1..95 1..95 485 98.9 Plus
cnc-PI 1133 CG43286-PI 1..95 1..95 485 98.9 Plus

RE05559.pep Sequence

Translation from 313 to 618

> RE05559.pep
MIDLEDLPRLQSLSPAKDIEYTYHQTQLQLNPKKKVTVRVPIGPPSKLSK
LIKPTVASTPAVLAKPTPSITQSTTPGNAKTNIWKGGFHFTNLVSIERLR
C*

RE05559.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18024-PA 111 GF18024-PA 1..105 1..96 281 67 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12452-PA 102 GG12452-PA 1..101 1..94 372 82.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
cnc-PN 1133 CG43286-PN 1..95 1..95 485 98.9 Plus
cnc-PM 1133 CG43286-PM 1..95 1..95 485 98.9 Plus
cnc-PI 1133 CG43286-PI 1..95 1..95 485 98.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23040-PA 110 GL23040-PA 1..97 1..95 269 61.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12552-PA 119 GA12552-PA 1..97 1..95 272 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23583-PA 101 GM23583-PA 1..100 1..94 364 79 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18398-PA 101 GD18398-PA 1..100 1..94 379 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13230-PA 131 GK13230-PA 1..73 1..71 184 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23975-PA 107 GE23975-PA 1..103 1..94 380 79.6 Plus