BDGP Sequence Production Resources |
Search the DGRC for RE05601
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 56 |
Well: | 1 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13995-RA |
Protein status: | RE05601.pep: gold |
Preliminary Size: | 1638 |
Sequenced Size: | 3391 |
Gene | Date | Evidence |
---|---|---|
CG13995 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13995 | 2002-06-10 | Blastp of sequenced clone |
CG13995 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13995 | 2008-04-29 | Release 5.5 accounting |
CG13995 | 2008-08-15 | Release 5.9 accounting |
CG13995 | 2008-12-18 | 5.12 accounting |
3391 bp (3391 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121658
> RE05601.complete AGTCTTCCGCCGTGGTCCTGTCGAGTAATGTGCGCCGCTGAGGAACAATC CCTGCACGTCGCGCCTTGAGTTTCATTTTACCTTTTTTTCGCCCCCACCC CACCCGACACTCATACATACAAACACCGACCGCACACTCGCACACAGACA CACACACACACGCGCACATTTGACAATATCAACAAAATAGTTCGAGGAGT TTTTAAAGCGTTTTTTACAAGTGTACGGCGATTCATTCTGCACACGAAAT ACATATTTGCTAAATTAAATATATTGAAAAGGCGGCACAGCAACGATCTA ACTGTAAATTACAGTGCCTTCCATACAAAGAAAGCGCCGCAGAACAACAT CGAGCAGCAGCAGGATCAGCAACAAATGCCTCAACACACTTCGTTAAGGA TAACACGCTCCTTTAGTATGAAATGAGGCGACCAGGCAAGCGCCTCGTCA TCGAAGATCACCCAAACAGAGTACGGACCAGGACACGGCAACTCGCACAG GCACAGGAACAGGTGCAGGCACAACAACTGGCAGGAGCATCGGTGTCGGC AAGGGATACTGGCGCGGGATCGAAAGCATGAACAGGGACAATCTGCAGCA GTGGTGGGAGAACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACC TCGGCCTGGACTCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAG CTGCCCGCGGACTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGA CGTGGACTCAGAGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTG TTAGCTATGGCCTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTC GTTCTGACCCTCTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCT GCTGGCCGTCTGCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGG TCACGCTCCTCAATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTT GTGCTGTGCAAGGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAG CACTATTTCGTTTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGC ATCCGCGATTGGCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTG GCGCTGCTATCCTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTT TGCCTACAAAATCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGG CGAACACCACGCCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGC GCCAACGCCATGTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTT CGTGTTGCCTGGCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCA AGCTCTGCGCCCTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCG CTGCCCATTCCCATCCTGCGACGCCAGACCCACATGGTCATTGTGACGGG CTGCCCCAACGCCCAGCAAGCGGCCTGTGGTGGGGGCACCACGGCGGACG ACACCTCGAACGGGAACGGCACGGGCACCGGTGGCGGTCCCATGGCCGTC AGTCCGGGCGACATACAGCTTCACACACTGCAGCCGCGCCAGCCAGGCTC TGCCGGATCGGCCCTCGAACCGGGCTCCTACCGCTCTAGCAATCCCATAT CACCCAGGGCCATGAGGGAGATTCGCGCCCACTCGCAGCGCCAGCGCATC AACCGAGCAGGCAGGGGACCAGCGACACCCGGCATCCCACTGCCCCAAAC CTCCACGCTGCGGTCGCGAAGGCACCTGGCTAACATGCTCATCGCCTCGG CCGTGATCTTCATTGCCTGCTGGGCACCGCACGTCTTCTGCATCTTCTAC AAGAACTTCGGCAACAATCAGCAGTGCAGCCAGACCTCTGTTTACTTCAG CCTTCTGCTAGGCTACTTCTACTCGGCCATCAGTCCGGTGATCTACTGGG CGCTCAACCACAATTCGCTTCGACAATCTCCCTGCGCGCCCATCATCCGC CTGCGCTCCATGCAGAACTTCCTGAGGTCGCGCTTCCGGACGCACACCGC CCCGCCGCCTCCCTCGTCCACCAACGAGGCGGCACTGGGGGCATTCAACC CCAAGCTGATCAAGCTAACACCGAAACAGTATAGAGCTCAGGCCTCTTCG CATTATCTCTACTAGTGTGATACTAAGCTAAACTTGATATACATATATAC ACATTTATATACACGCATATATAGTATATTTTTTACCTACGACCCCACCC CCCCCCTGACCCGTCGATGCCCTCTTAGTACCCTCTAGTATCGAACTCCG AACCCGAACTTTGACCCAACCGAACGAAACTATCTAGATGTTTTTCAAAA GCTCTACGCAACAATTGCATAATACGAAAGATACATGCTACATATACACA TATATAGAGTACATACTACCTTGCATAGCAGTGTTAGTCGACGCTTATTT ACACGATGTTGTGCGCCTGAAGCTATGCAATAAGGACACCGGAGTCCTGC CGCAACTCTTGCCTATAACGAGGATAGCACTGGTAACGAAAGCAAGAAAA AAAAAAGGAAAAAAAATACAAAAATAACGAAACCCTTCTAGTGACTTGTT CGAATTGTTGTTTAGTCTTTTAAGCTGAAATATTGTACTATGTTCCTTCT CATAGATAAGCAATAAGTGAACGCTTTAAGCCAAGTTAAACAAACGGAAA ACGAATCAAACTAAACTAAAACTCGATCTAAAACTTTTAAACGATTTAAA CGTAAACTCGAAAGCATACCTAACGAAACATTAATAATTATATACATACG CGACTACATACAAATAACAACTAACAAGTGAAAACTAAAAACAAAAAATG AATGTAAATGTGAGCAAAAAAACAAAAGGATAACATTTAGTATTGTATAC ATATTCTTCGACTTAATTCTTTATACACTTTTTCTAACCATTTTTAATAT CGTTCAGTAAACTGAACACGGTGTATAGGGCAATTCAAGCTGCTGGATAT ATTCGCGTTTCAGATGCCAGAGCCACCCAAAGGATCGGACTCTGGATCGG GTTTCATTTCACTCCATTCAGTGGCGACCGTTTCCTAATTTGCCAAACTT TTGTACATGCTCCGCTGCGAGCGACTCTCTCCTTACTCCACCTGGTTTTT CGTTCAATCCTTGGAGCATCTTGTTTAGAGCCATCTGAAGCAGCAGCTGC TATTACCGCCTTGGAATTAGTGGCTATAAACCTTAAGCTAACTTTAAATA ACCATCGTTTTGTACTTTACAAATCGTCATCGAAAACAGAGAATCTATGA AAATACTATAAATATGCTATCTAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13995-RA | 3503 | CG13995-RA | 130..3503 | 1..3374 | 16870 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6057806..6059220 | 1960..3374 | 7075 | 100 | Plus |
chr2L | 23010047 | chr2L | 6056619..6057299 | 1028..1708 | 3405 | 100 | Plus |
chr2L | 23010047 | chr2L | 6055934..6056559 | 407..1032 | 3130 | 100 | Plus |
chr2L | 23010047 | chr2L | 6053358..6053764 | 1..407 | 2035 | 100 | Plus |
chr2L | 23010047 | chr2L | 6057477..6057733 | 1706..1962 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6058755..6060169 | 1960..3374 | 7075 | 100 | Plus |
2L | 23513712 | 2L | 6057568..6058248 | 1028..1708 | 3405 | 100 | Plus |
2L | 23513712 | 2L | 6056883..6057508 | 407..1032 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 6054307..6054713 | 1..407 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 6058426..6058682 | 1706..1962 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6058755..6060169 | 1960..3374 | 7075 | 100 | Plus |
2L | 23513712 | 2L | 6057568..6058248 | 1028..1708 | 3405 | 100 | Plus |
2L | 23513712 | 2L | 6056883..6057508 | 407..1032 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 6054307..6054713 | 1..407 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 6058426..6058682 | 1706..1962 | 1285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 6223..6382 | 2776..2935 | 150 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2520 | 326..528 | 145 | 58.9 | Plus |
opus | 7521 | opus OPUS 7521bp | 6005..6210 | 2738..2947 | 132 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2426..2488 | 325..386 | 131 | 73.4 | Plus |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 306..369 | 2466..2405 | 126 | 68.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6053358..6053764 | 1..407 | 91 | -> | Plus |
chr2L | 6055935..6056557 | 408..1030 | 100 | -> | Plus |
chr2L | 6056622..6057298 | 1031..1707 | 100 | -> | Plus |
chr2L | 6057479..6057732 | 1708..1961 | 100 | -> | Plus |
chr2L | 6057808..6059220 | 1962..3375 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..1638 | 578..2215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..1638 | 578..2215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..1638 | 578..2215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..1638 | 578..2215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..3374 | 1..3374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..3374 | 1..3374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 6..3379 | 1..3374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 1..3374 | 1..3374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13995-RA | 6..3379 | 1..3374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6054307..6054713 | 1..407 | 100 | -> | Plus |
2L | 6056884..6057506 | 408..1030 | 100 | -> | Plus |
2L | 6057571..6058247 | 1031..1707 | 100 | -> | Plus |
2L | 6058428..6058681 | 1708..1961 | 100 | -> | Plus |
2L | 6058757..6060169 | 1962..3375 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6054307..6054713 | 1..407 | 100 | -> | Plus |
2L | 6056884..6057506 | 408..1030 | 100 | -> | Plus |
2L | 6057571..6058247 | 1031..1707 | 100 | -> | Plus |
2L | 6058428..6058681 | 1708..1961 | 100 | -> | Plus |
2L | 6058757..6060169 | 1962..3375 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6054307..6054713 | 1..407 | 100 | -> | Plus |
2L | 6056884..6057506 | 408..1030 | 100 | -> | Plus |
2L | 6057571..6058247 | 1031..1707 | 100 | -> | Plus |
2L | 6058428..6058681 | 1708..1961 | 100 | -> | Plus |
2L | 6058757..6060169 | 1962..3375 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6054307..6054713 | 1..407 | 100 | -> | Plus |
arm_2L | 6056884..6057506 | 408..1030 | 100 | -> | Plus |
arm_2L | 6057571..6058247 | 1031..1707 | 100 | -> | Plus |
arm_2L | 6058428..6058681 | 1708..1961 | 100 | -> | Plus |
arm_2L | 6058757..6060169 | 1962..3375 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6054307..6054713 | 1..407 | 100 | -> | Plus |
2L | 6056884..6057506 | 408..1030 | 100 | -> | Plus |
2L | 6057571..6058247 | 1031..1707 | 100 | -> | Plus |
2L | 6058428..6058681 | 1708..1961 | 100 | -> | Plus |
2L | 6058757..6060169 | 1962..3375 | 99 | Plus |
Translation from 577 to 2214
> RE05601.hyp MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13995-PA | 545 | CG13995-PA | 1..545 | 1..545 | 2832 | 100 | Plus |
5-HT7-PB | 564 | CG12073-PB | 154..547 | 62..513 | 193 | 22.8 | Plus |
5-HT7-PA | 564 | CG12073-PA | 154..547 | 62..513 | 193 | 22.8 | Plus |
NPFR-PC | 462 | CG1147-PC | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PB | 466 | CG1147-PB | 88..288 | 72..276 | 158 | 23.9 | Plus |
Translation from 577 to 2214
> RE05601.pep MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14498-PA | 555 | GF14498-PA | 1..555 | 1..545 | 2341 | 86.6 | Plus |
Dana\GF23300-PA | 528 | GF23300-PA | 112..511 | 62..513 | 168 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23924-PA | 545 | GG23924-PA | 1..545 | 1..545 | 2826 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10797-PA | 576 | GH10797-PA | 1..576 | 1..545 | 2300 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13995-PA | 545 | CG13995-PA | 1..545 | 1..545 | 2832 | 100 | Plus |
5-HT7-PB | 564 | CG12073-PB | 154..547 | 62..513 | 193 | 22.8 | Plus |
5-HT7-PA | 564 | CG12073-PA | 154..547 | 62..513 | 193 | 22.8 | Plus |
NPFR-PC | 462 | CG1147-PC | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PB | 466 | CG1147-PB | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PA | 485 | CG1147-PA | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PD | 489 | CG1147-PD | 88..288 | 72..276 | 158 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17307-PA | 548 | GI17307-PA | 1..548 | 1..545 | 2351 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19058-PA | 562 | GL19058-PA | 1..562 | 1..545 | 2411 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12684-PA | 562 | GA12684-PA | 1..562 | 1..545 | 2411 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18596-PA | 545 | GM18596-PA | 1..545 | 1..545 | 2860 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15749-PA | 571 | GJ15749-PA | 1..571 | 1..545 | 2318 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14720-PA | 584 | GK14720-PA | 1..584 | 1..545 | 2312 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25866-PA | 545 | GE25866-PA | 1..545 | 1..545 | 2823 | 98 | Plus |