Clone RE05601 Report

Search the DGRC for RE05601

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:56
Well:1
Vector:pFlc-1
Associated Gene/TranscriptCG13995-RA
Protein status:RE05601.pep: gold
Preliminary Size:1638
Sequenced Size:3391

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13995 2002-01-01 Sim4 clustering to Release 2
CG13995 2002-06-10 Blastp of sequenced clone
CG13995 2003-01-01 Sim4 clustering to Release 3
CG13995 2008-04-29 Release 5.5 accounting
CG13995 2008-08-15 Release 5.9 accounting
CG13995 2008-12-18 5.12 accounting

Clone Sequence Records

RE05601.complete Sequence

3391 bp (3391 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121658

> RE05601.complete
AGTCTTCCGCCGTGGTCCTGTCGAGTAATGTGCGCCGCTGAGGAACAATC
CCTGCACGTCGCGCCTTGAGTTTCATTTTACCTTTTTTTCGCCCCCACCC
CACCCGACACTCATACATACAAACACCGACCGCACACTCGCACACAGACA
CACACACACACGCGCACATTTGACAATATCAACAAAATAGTTCGAGGAGT
TTTTAAAGCGTTTTTTACAAGTGTACGGCGATTCATTCTGCACACGAAAT
ACATATTTGCTAAATTAAATATATTGAAAAGGCGGCACAGCAACGATCTA
ACTGTAAATTACAGTGCCTTCCATACAAAGAAAGCGCCGCAGAACAACAT
CGAGCAGCAGCAGGATCAGCAACAAATGCCTCAACACACTTCGTTAAGGA
TAACACGCTCCTTTAGTATGAAATGAGGCGACCAGGCAAGCGCCTCGTCA
TCGAAGATCACCCAAACAGAGTACGGACCAGGACACGGCAACTCGCACAG
GCACAGGAACAGGTGCAGGCACAACAACTGGCAGGAGCATCGGTGTCGGC
AAGGGATACTGGCGCGGGATCGAAAGCATGAACAGGGACAATCTGCAGCA
GTGGTGGGAGAACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACC
TCGGCCTGGACTCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAG
CTGCCCGCGGACTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGA
CGTGGACTCAGAGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTG
TTAGCTATGGCCTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTC
GTTCTGACCCTCTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCT
GCTGGCCGTCTGCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGG
TCACGCTCCTCAATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTT
GTGCTGTGCAAGGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAG
CACTATTTCGTTTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGC
ATCCGCGATTGGCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTG
GCGCTGCTATCCTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTT
TGCCTACAAAATCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGG
CGAACACCACGCCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGC
GCCAACGCCATGTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTT
CGTGTTGCCTGGCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCA
AGCTCTGCGCCCTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCG
CTGCCCATTCCCATCCTGCGACGCCAGACCCACATGGTCATTGTGACGGG
CTGCCCCAACGCCCAGCAAGCGGCCTGTGGTGGGGGCACCACGGCGGACG
ACACCTCGAACGGGAACGGCACGGGCACCGGTGGCGGTCCCATGGCCGTC
AGTCCGGGCGACATACAGCTTCACACACTGCAGCCGCGCCAGCCAGGCTC
TGCCGGATCGGCCCTCGAACCGGGCTCCTACCGCTCTAGCAATCCCATAT
CACCCAGGGCCATGAGGGAGATTCGCGCCCACTCGCAGCGCCAGCGCATC
AACCGAGCAGGCAGGGGACCAGCGACACCCGGCATCCCACTGCCCCAAAC
CTCCACGCTGCGGTCGCGAAGGCACCTGGCTAACATGCTCATCGCCTCGG
CCGTGATCTTCATTGCCTGCTGGGCACCGCACGTCTTCTGCATCTTCTAC
AAGAACTTCGGCAACAATCAGCAGTGCAGCCAGACCTCTGTTTACTTCAG
CCTTCTGCTAGGCTACTTCTACTCGGCCATCAGTCCGGTGATCTACTGGG
CGCTCAACCACAATTCGCTTCGACAATCTCCCTGCGCGCCCATCATCCGC
CTGCGCTCCATGCAGAACTTCCTGAGGTCGCGCTTCCGGACGCACACCGC
CCCGCCGCCTCCCTCGTCCACCAACGAGGCGGCACTGGGGGCATTCAACC
CCAAGCTGATCAAGCTAACACCGAAACAGTATAGAGCTCAGGCCTCTTCG
CATTATCTCTACTAGTGTGATACTAAGCTAAACTTGATATACATATATAC
ACATTTATATACACGCATATATAGTATATTTTTTACCTACGACCCCACCC
CCCCCCTGACCCGTCGATGCCCTCTTAGTACCCTCTAGTATCGAACTCCG
AACCCGAACTTTGACCCAACCGAACGAAACTATCTAGATGTTTTTCAAAA
GCTCTACGCAACAATTGCATAATACGAAAGATACATGCTACATATACACA
TATATAGAGTACATACTACCTTGCATAGCAGTGTTAGTCGACGCTTATTT
ACACGATGTTGTGCGCCTGAAGCTATGCAATAAGGACACCGGAGTCCTGC
CGCAACTCTTGCCTATAACGAGGATAGCACTGGTAACGAAAGCAAGAAAA
AAAAAAGGAAAAAAAATACAAAAATAACGAAACCCTTCTAGTGACTTGTT
CGAATTGTTGTTTAGTCTTTTAAGCTGAAATATTGTACTATGTTCCTTCT
CATAGATAAGCAATAAGTGAACGCTTTAAGCCAAGTTAAACAAACGGAAA
ACGAATCAAACTAAACTAAAACTCGATCTAAAACTTTTAAACGATTTAAA
CGTAAACTCGAAAGCATACCTAACGAAACATTAATAATTATATACATACG
CGACTACATACAAATAACAACTAACAAGTGAAAACTAAAAACAAAAAATG
AATGTAAATGTGAGCAAAAAAACAAAAGGATAACATTTAGTATTGTATAC
ATATTCTTCGACTTAATTCTTTATACACTTTTTCTAACCATTTTTAATAT
CGTTCAGTAAACTGAACACGGTGTATAGGGCAATTCAAGCTGCTGGATAT
ATTCGCGTTTCAGATGCCAGAGCCACCCAAAGGATCGGACTCTGGATCGG
GTTTCATTTCACTCCATTCAGTGGCGACCGTTTCCTAATTTGCCAAACTT
TTGTACATGCTCCGCTGCGAGCGACTCTCTCCTTACTCCACCTGGTTTTT
CGTTCAATCCTTGGAGCATCTTGTTTAGAGCCATCTGAAGCAGCAGCTGC
TATTACCGCCTTGGAATTAGTGGCTATAAACCTTAAGCTAACTTTAAATA
ACCATCGTTTTGTACTTTACAAATCGTCATCGAAAACAGAGAATCTATGA
AAATACTATAAATATGCTATCTAGCAAAAAAAAAAAAAAAA

RE05601.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-RA 3503 CG13995-RA 130..3503 1..3374 16870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6057806..6059220 1960..3374 7075 100 Plus
chr2L 23010047 chr2L 6056619..6057299 1028..1708 3405 100 Plus
chr2L 23010047 chr2L 6055934..6056559 407..1032 3130 100 Plus
chr2L 23010047 chr2L 6053358..6053764 1..407 2035 100 Plus
chr2L 23010047 chr2L 6057477..6057733 1706..1962 1285 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6058755..6060169 1960..3374 7075 100 Plus
2L 23513712 2L 6057568..6058248 1028..1708 3405 100 Plus
2L 23513712 2L 6056883..6057508 407..1032 3130 100 Plus
2L 23513712 2L 6054307..6054713 1..407 2035 100 Plus
2L 23513712 2L 6058426..6058682 1706..1962 1285 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6058755..6060169 1960..3374 7075 100 Plus
2L 23513712 2L 6057568..6058248 1028..1708 3405 100 Plus
2L 23513712 2L 6056883..6057508 407..1032 3130 100 Plus
2L 23513712 2L 6054307..6054713 1..407 2035 100 Plus
2L 23513712 2L 6058426..6058682 1706..1962 1285 100 Plus
Blast to na_te.dros performed 2019-03-16 15:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 6223..6382 2776..2935 150 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2520 326..528 145 58.9 Plus
opus 7521 opus OPUS 7521bp 6005..6210 2738..2947 132 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2426..2488 325..386 131 73.4 Plus
transib2 2844 transib2 TRANSIB2 2844bp 306..369 2466..2405 126 68.8 Minus

RE05601.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:03 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6053358..6053764 1..407 91 -> Plus
chr2L 6055935..6056557 408..1030 100 -> Plus
chr2L 6056622..6057298 1031..1707 100 -> Plus
chr2L 6057479..6057732 1708..1961 100 -> Plus
chr2L 6057808..6059220 1962..3375 96   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:26:46 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..1638 578..2215 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:06:53 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..1638 578..2215 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:11 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..1638 578..2215 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:38:24 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..1638 578..2215 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:55:13 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..3374 1..3374 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:26:45 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..3374 1..3374 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:53 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 6..3379 1..3374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:11 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 1..3374 1..3374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:24 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG13995-RA 6..3379 1..3374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:03 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6054307..6054713 1..407 100 -> Plus
2L 6056884..6057506 408..1030 100 -> Plus
2L 6057571..6058247 1031..1707 100 -> Plus
2L 6058428..6058681 1708..1961 100 -> Plus
2L 6058757..6060169 1962..3375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:03 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6054307..6054713 1..407 100 -> Plus
2L 6056884..6057506 408..1030 100 -> Plus
2L 6057571..6058247 1031..1707 100 -> Plus
2L 6058428..6058681 1708..1961 100 -> Plus
2L 6058757..6060169 1962..3375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:03 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6054307..6054713 1..407 100 -> Plus
2L 6056884..6057506 408..1030 100 -> Plus
2L 6057571..6058247 1031..1707 100 -> Plus
2L 6058428..6058681 1708..1961 100 -> Plus
2L 6058757..6060169 1962..3375 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:53 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6054307..6054713 1..407 100 -> Plus
arm_2L 6056884..6057506 408..1030 100 -> Plus
arm_2L 6057571..6058247 1031..1707 100 -> Plus
arm_2L 6058428..6058681 1708..1961 100 -> Plus
arm_2L 6058757..6060169 1962..3375 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:50:34 Download gff for RE05601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6054307..6054713 1..407 100 -> Plus
2L 6056884..6057506 408..1030 100 -> Plus
2L 6057571..6058247 1031..1707 100 -> Plus
2L 6058428..6058681 1708..1961 100 -> Plus
2L 6058757..6060169 1962..3375 99   Plus

RE05601.hyp Sequence

Translation from 577 to 2214

> RE05601.hyp
MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN
FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS
VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV
QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA
AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI
IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ
THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT
LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT
PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC
SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR
SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*

RE05601.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-PA 545 CG13995-PA 1..545 1..545 2832 100 Plus
5-HT7-PB 564 CG12073-PB 154..547 62..513 193 22.8 Plus
5-HT7-PA 564 CG12073-PA 154..547 62..513 193 22.8 Plus
NPFR-PC 462 CG1147-PC 88..288 72..276 158 23.9 Plus
NPFR-PB 466 CG1147-PB 88..288 72..276 158 23.9 Plus

RE05601.pep Sequence

Translation from 577 to 2214

> RE05601.pep
MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN
FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS
VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV
QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA
AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI
IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ
THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT
LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT
PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC
SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR
SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLY*

RE05601.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14498-PA 555 GF14498-PA 1..555 1..545 2341 86.6 Plus
Dana\GF23300-PA 528 GF23300-PA 112..511 62..513 168 22.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23924-PA 545 GG23924-PA 1..545 1..545 2826 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10797-PA 576 GH10797-PA 1..576 1..545 2300 79.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13995-PA 545 CG13995-PA 1..545 1..545 2832 100 Plus
5-HT7-PB 564 CG12073-PB 154..547 62..513 193 22.8 Plus
5-HT7-PA 564 CG12073-PA 154..547 62..513 193 22.8 Plus
NPFR-PC 462 CG1147-PC 88..288 72..276 158 23.9 Plus
NPFR-PB 466 CG1147-PB 88..288 72..276 158 23.9 Plus
NPFR-PA 485 CG1147-PA 88..288 72..276 158 23.9 Plus
NPFR-PD 489 CG1147-PD 88..288 72..276 158 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17307-PA 548 GI17307-PA 1..548 1..545 2351 84.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19058-PA 562 GL19058-PA 1..562 1..545 2411 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12684-PA 562 GA12684-PA 1..562 1..545 2411 86.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18596-PA 545 GM18596-PA 1..545 1..545 2860 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15749-PA 571 GJ15749-PA 1..571 1..545 2318 82.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14720-PA 584 GK14720-PA 1..584 1..545 2312 81 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25866-PA 545 GE25866-PA 1..545 1..545 2823 98 Plus