RE05806.complete Sequence
997 bp (997 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070957
> RE05806.complete
ATCGATAAGTATCGCCTGGCGAGTGGGCATTGTTTTTTATAGAAGCAGCA
AGATGAGCACGTACCTACAGAGCAGCGAGGGCAAGTTCATTCCGGCCACC
AAGCGGCCGGATGGCACCTGGCGCAAGGCGCGGCGCGTCAAGGACGGCTA
CGTGCCGCAGGAGGAGGTGCCACTCTACGAGAGCAAGGGCAAGCAGTTCG
TGGCGCAGCGCCAGGCCGGAGTGCCGCCTGGCATGTGTCCCCTGCTGGCC
GCCGAGTCCAAGAAGGAGCGCGAGAAGCAGGAGCGCACCAGGGCCAAGAA
GCAGGAGAAGGAATCCGGCAGGCAGCCAAAGGCGCCGGCGCCCGGCGTCC
TGGTTATGCCGCCCAGCACGTGTCCGCCACCCAAAGTCAGTCAGCAGCAG
CAGCAGCAGCAACAGCAGCCCTCTGGCAGCCGGGACATCAACTCGATATC
CAAGACACTGGAGGACACCCTGAAACTGGACGCCGCCCAGGAGGTGGTGG
ACCCTGCCAAGCAGTTGAAGAAGCTGCGCAAGAAAATCCGGGAAATCGAA
CAGATCGAGAGCAGGATCCAGGCCGGCGAGCAGAAGAAGCTGGACAAGGA
CCAGCTGGACAAGGTGAAAAAGAAGTCAGAGATCCTGCGCCAGATCAAGG
ACTTGGAGAGCACGCCGCGCTCATAGCCCACTGCTCCAGCTCCAGCTCCA
GTCCACTCAGATACTGCTACGAGTATATCCTCTCACCTCGTGAACAAATC
ACCGACCAGAAGTCGCGCCGCCTCTGCACGAAAGAACACATACATGCCTA
TGTCTGTTGAATAGTTATATTAGTTTTAGTCGAAGATGTCAAGCCATTTA
GTAATATCGATCTATTTTAGTAATGTGTGTCTGTCTTGAAACCTAGTTTA
TACGAATGGGGAATCGCCGCGTTTATTTATGTATAGGTAACTTTGTAAAT
CAGATTTAATAAATTAAACCCATTTGAAGCTAAAAAAAAAAAAAAAA
RE05806.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wibg-RA | 980 | wibg-RA | 1..980 | 1..980 | 4900 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19742034..19743013 | 980..1 | 4810 | 99.4 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23855951..23856934 | 984..1 | 4905 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23857150..23858133 | 984..1 | 4905 | 99.8 | Minus |
Blast to na_te.dros performed on 2019-03-16 15:16:50 has no hits.
RE05806.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:17:49 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19742033..19743013 | 1..981 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:26 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..624 | 53..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:57 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..624 | 53..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:07:33 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..624 | 53..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:38 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..624 | 53..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:11 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pym-RA | 1..624 | 53..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:55 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..980 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:57 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..980 | 1..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:33 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 3..982 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:19 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wibg-RA | 1..980 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:11 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pym-RA | 3..982 | 1..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23855954..23856934 | 1..981 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23855954..23856934 | 1..981 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23855954..23856934 | 1..981 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:33 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19743477..19744457 | 1..981 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:22 Download gff for
RE05806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23857171..23858151 | 1..981 | 99 | | Minus |
RE05806.hyp Sequence
Translation from 0 to 675
> RE05806.hyp
SISIAWRVGIVFYRSSKMSTYLQSSEGKFIPATKRPDGTWRKARRVKDGY
VPQEEVPLYESKGKQFVAQRQAGVPPGMCPLLAAESKKEREKQERTRAKK
QEKESGRQPKAPAPGVLVMPPSTCPPPKVSQQQQQQQQQPSGSRDINSIS
KTLEDTLKLDAAQEVVDPAKQLKKLRKKIREIEQIESRIQAGEQKKLDKD
QLDKVKKKSEILRQIKDLESTPRS*
RE05806.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pym-PA | 207 | CG30176-PA | 1..207 | 18..224 | 1051 | 100 | Plus |
RE05806.pep Sequence
Translation from 52 to 675
> RE05806.pep
MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFV
AQRQAGVPPGMCPLLAAESKKEREKQERTRAKKQEKESGRQPKAPAPGVL
VMPPSTCPPPKVSQQQQQQQQQPSGSRDINSISKTLEDTLKLDAAQEVVD
PAKQLKKLRKKIREIEQIESRIQAGEQKKLDKDQLDKVKKKSEILRQIKD
LESTPRS*
RE05806.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pym-PA | 207 | CG30176-PA | 1..207 | 1..207 | 1051 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15199-PA | 284 | GD15199-PA | 81..284 | 1..207 | 1004 | 96.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK20274-PA | 129 | GK20274-PA | 1..87 | 1..89 | 362 | 76.4 | Plus |
Dwil\GK11153-PA | 129 | GK11153-PA | 1..87 | 1..89 | 362 | 76.4 | Plus |
Dwil\GK22401-PA | 97 | GK22401-PA | 1..73 | 1..73 | 338 | 82.2 | Plus |
Dwil\GK11132-PA | 163 | GK11132-PA | 1..65 | 1..65 | 332 | 87.7 | Plus |
Dwil\GK11593-PA | 163 | GK11593-PA | 1..65 | 1..65 | 324 | 86.2 | Plus |