Clone RE05806 Report

Search the DGRC for RE05806

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:58
Well:6
Vector:pFlc-1
Associated Gene/TranscriptPym-RA
Protein status:RE05806.pep: gold
Sequenced Size:997

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30176 2001-12-14 Blastp of sequenced clone
CG10330 2002-01-01 Sim4 clustering to Release 2
CG30176 2003-01-01 Sim4 clustering to Release 3
wibg 2008-04-29 Release 5.5 accounting
wibg 2008-08-15 Release 5.9 accounting
wibg 2008-12-18 5.12 accounting

Clone Sequence Records

RE05806.complete Sequence

997 bp (997 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070957

> RE05806.complete
ATCGATAAGTATCGCCTGGCGAGTGGGCATTGTTTTTTATAGAAGCAGCA
AGATGAGCACGTACCTACAGAGCAGCGAGGGCAAGTTCATTCCGGCCACC
AAGCGGCCGGATGGCACCTGGCGCAAGGCGCGGCGCGTCAAGGACGGCTA
CGTGCCGCAGGAGGAGGTGCCACTCTACGAGAGCAAGGGCAAGCAGTTCG
TGGCGCAGCGCCAGGCCGGAGTGCCGCCTGGCATGTGTCCCCTGCTGGCC
GCCGAGTCCAAGAAGGAGCGCGAGAAGCAGGAGCGCACCAGGGCCAAGAA
GCAGGAGAAGGAATCCGGCAGGCAGCCAAAGGCGCCGGCGCCCGGCGTCC
TGGTTATGCCGCCCAGCACGTGTCCGCCACCCAAAGTCAGTCAGCAGCAG
CAGCAGCAGCAACAGCAGCCCTCTGGCAGCCGGGACATCAACTCGATATC
CAAGACACTGGAGGACACCCTGAAACTGGACGCCGCCCAGGAGGTGGTGG
ACCCTGCCAAGCAGTTGAAGAAGCTGCGCAAGAAAATCCGGGAAATCGAA
CAGATCGAGAGCAGGATCCAGGCCGGCGAGCAGAAGAAGCTGGACAAGGA
CCAGCTGGACAAGGTGAAAAAGAAGTCAGAGATCCTGCGCCAGATCAAGG
ACTTGGAGAGCACGCCGCGCTCATAGCCCACTGCTCCAGCTCCAGCTCCA
GTCCACTCAGATACTGCTACGAGTATATCCTCTCACCTCGTGAACAAATC
ACCGACCAGAAGTCGCGCCGCCTCTGCACGAAAGAACACATACATGCCTA
TGTCTGTTGAATAGTTATATTAGTTTTAGTCGAAGATGTCAAGCCATTTA
GTAATATCGATCTATTTTAGTAATGTGTGTCTGTCTTGAAACCTAGTTTA
TACGAATGGGGAATCGCCGCGTTTATTTATGTATAGGTAACTTTGTAAAT
CAGATTTAATAAATTAAACCCATTTGAAGCTAAAAAAAAAAAAAAAA

RE05806.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
wibg-RA 980 wibg-RA 1..980 1..980 4900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19742034..19743013 980..1 4810 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:28:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23855951..23856934 984..1 4905 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23857150..23858133 984..1 4905 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 15:16:50 has no hits.

RE05806.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:17:49 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19742033..19743013 1..981 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:26 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..624 53..676 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:57 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..624 53..676 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:07:33 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..624 53..676 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:38 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..624 53..676 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:11 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
Pym-RA 1..624 53..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:55 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..980 1..981 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:57 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..980 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:33 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 3..982 1..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:19 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
wibg-RA 1..980 1..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:11 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
Pym-RA 3..982 1..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23855954..23856934 1..981 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23855954..23856934 1..981 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:49 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23855954..23856934 1..981 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:33 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19743477..19744457 1..981 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:22 Download gff for RE05806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23857171..23858151 1..981 99   Minus

RE05806.hyp Sequence

Translation from 0 to 675

> RE05806.hyp
SISIAWRVGIVFYRSSKMSTYLQSSEGKFIPATKRPDGTWRKARRVKDGY
VPQEEVPLYESKGKQFVAQRQAGVPPGMCPLLAAESKKEREKQERTRAKK
QEKESGRQPKAPAPGVLVMPPSTCPPPKVSQQQQQQQQQPSGSRDINSIS
KTLEDTLKLDAAQEVVDPAKQLKKLRKKIREIEQIESRIQAGEQKKLDKD
QLDKVKKKSEILRQIKDLESTPRS*

RE05806.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pym-PA 207 CG30176-PA 1..207 18..224 1051 100 Plus

RE05806.pep Sequence

Translation from 52 to 675

> RE05806.pep
MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFV
AQRQAGVPPGMCPLLAAESKKEREKQERTRAKKQEKESGRQPKAPAPGVL
VMPPSTCPPPKVSQQQQQQQQQPSGSRDINSISKTLEDTLKLDAAQEVVD
PAKQLKKLRKKIREIEQIESRIQAGEQKKLDKDQLDKVKKKSEILRQIKD
LESTPRS*

RE05806.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pym-PA 207 CG30176-PA 1..207 1..207 1051 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15199-PA 284 GD15199-PA 81..284 1..207 1004 96.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20274-PA 129 GK20274-PA 1..87 1..89 362 76.4 Plus
Dwil\GK11153-PA 129 GK11153-PA 1..87 1..89 362 76.4 Plus
Dwil\GK22401-PA 97 GK22401-PA 1..73 1..73 338 82.2 Plus
Dwil\GK11132-PA 163 GK11132-PA 1..65 1..65 332 87.7 Plus
Dwil\GK11593-PA 163 GK11593-PA 1..65 1..65 324 86.2 Plus