BDGP Sequence Production Resources |
Search the DGRC for RE05963
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 59 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cpr97Eb-RA |
Protein status: | RE05963.pep: gold |
Preliminary Size: | 714 |
Sequenced Size: | 1062 |
Gene | Date | Evidence |
---|---|---|
CG15884 | 2001-12-14 | Blastp of sequenced clone |
CG15884 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15884 | 2003-01-01 | Sim4 clustering to Release 3 |
Cpr97Eb | 2008-04-29 | Release 5.5 accounting |
Cpr97Eb | 2008-08-15 | Release 5.9 accounting |
Cpr97Eb | 2008-12-18 | 5.12 accounting |
1062 bp (1062 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070959
> RE05963.complete GAGTTTGTCGTTTCGATTCGCAGAGTCTCGAGTGCAAGTGCAGAACACAT TTTCCATTTTCGCAGTGCATAACTACTTTGGGAGATTGGTGAAAACGGTT CGACATTGACAATTGGTTCTAAGCTTGGCAGCATGTTGAAATTGACCTTG AGCTTGGGTCTTCTGCTTCTGGCGGCCCACAGTGCGTATGCGCAACACCA GGACTACACCACACCGGTGCCCATTCTCAAGCAGATCGACAAGCACAACG ACGATGGTTCCTACACATATGGATACGAAGCGGCCGATAAGAGCTTCAAG ATCGAAACCAAGTACGCGAATGGAGAGGTCTATGGAAAGTACGGTTATGT GGATGACCAGGGAAAAGTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTG GCTTTGAGCCCGCTGGCAGTCACATCAATGTGCCACCACCTACGCTGACC AACAGCAATCCCTATCCATTGGGACCCAACGAATTGGACGATGGCCAGTA TCGTGAGGACCCCTCGGTGTACTACAAGGACCAGAAGTTCAATCGCCCCC TTTCACCGGCCAGTAAATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAG CAGGCGTATGCCCCGCCACCTCGGCAGCCCGCCCCACAAACGCCCTACTA CAATCCCACACCCCAATACTACAATCCCCCGGCTCCGCAGCCCCGTTACT ACCAGCCTCCGGCCCAGAACTACTATAATCCCCAGCAGCAACAGCCATAC AGGGGGTTGCCGGAGCAACATCATCCCTCCCTGCGAAATCTCAACCTCTA CACCGGTTCCTATAGCATCGACTATACGGGCCGGAAGTAGGAAGGAGGAC CTTTTGATGGGGGGATCACCTCTGAGTTGGGCCAGAGAGTCAGGGACTGA AGTGTCCGAGGACAATGTCAACTTGTTACTGCCAAATAAATCAGTCACTC CGCACACCCCACACATGTATCTATTACTGTACCTGTTTATATATGTTCTT GAATGTGTGTAATAAATCGAGTTTTGAAACCTGAAGCGTTTACAGAGAAA AAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22914007..22914150 | 1..144 | 98 | Minus | |
chr3R | 22912731..22913633 | 145..1047 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..708 | 133..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..708 | 133..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..708 | 133..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..708 | 133..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..708 | 133..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..1047 | 1..1047 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..1047 | 1..1047 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 8..1054 | 1..1047 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 1..1047 | 1..1047 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr97Eb-RA | 8..1054 | 1..1047 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27089704..27090606 | 145..1047 | 100 | <- | Minus |
3R | 27090980..27091123 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27089704..27090606 | 145..1047 | 100 | <- | Minus |
3R | 27090980..27091123 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27089704..27090606 | 145..1047 | 100 | <- | Minus |
3R | 27090980..27091123 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22915426..22916328 | 145..1047 | 100 | <- | Minus |
arm_3R | 22916702..22916845 | 1..144 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26831811..26831954 | 1..144 | 100 | Minus | |
3R | 26830535..26831437 | 145..1047 | 100 | <- | Minus |
Translation from 132 to 839
> RE05963.pep MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22954-PA | 237 | GF22954-PA | 19..237 | 19..235 | 929 | 87.8 | Plus |
Dana\GF22955-PA | 361 | GF22955-PA | 38..135 | 11..109 | 326 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12142-PA | 235 | GG12142-PA | 1..235 | 1..235 | 1185 | 97.9 | Plus |
Dere\GG12144-PA | 366 | GG12144-PA | 3..137 | 1..109 | 307 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18952-PA | 236 | GH18952-PA | 1..236 | 1..235 | 875 | 82.7 | Plus |
Dgri\GH18953-PA | 358 | GH18953-PA | 50..132 | 27..109 | 316 | 71.1 | Plus |
Dgri\GH19947-PA | 265 | GH19947-PA | 1..110 | 1..98 | 145 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpr97Eb-PA | 235 | CG15884-PA | 1..235 | 1..235 | 1297 | 100 | Plus |
Cpr97Ea-PB | 363 | CG6131-PB | 35..212 | 11..214 | 352 | 43.9 | Plus |
Cpr97Ea-PA | 366 | CG6131-PA | 38..215 | 11..214 | 352 | 43.9 | Plus |
Cpr100A-PA | 241 | CG12045-PA | 10..221 | 12..210 | 227 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23278-PA | 223 | GI23278-PA | 2..223 | 18..235 | 815 | 79.8 | Plus |
Dmoj\GI23279-PA | 349 | GI23279-PA | 34..129 | 14..109 | 331 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23617-PA | 231 | GL23617-PA | 1..231 | 1..235 | 911 | 79.6 | Plus |
Dper\GL23618-PA | 366 | GL23618-PA | 3..151 | 1..142 | 321 | 45.7 | Plus |
Dper\GL16750-PA | 106 | GL16750-PA | 1..94 | 5..98 | 136 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14004-PA | 231 | GA14004-PA | 1..231 | 1..235 | 911 | 79.6 | Plus |
Dpse\GA26662-PA | 231 | GA26662-PA | 1..231 | 1..235 | 911 | 79.6 | Plus |
Dpse\GA23225-PA | 366 | GA23225-PA | 51..133 | 27..109 | 318 | 72.3 | Plus |
Dpse\GA21522-PA | 106 | GA21522-PA | 1..94 | 5..98 | 136 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10136-PA | 235 | GM10136-PA | 1..235 | 1..235 | 1203 | 99.6 | Plus |
Dsec\GM10137-PA | 366 | GM10137-PA | 56..137 | 28..109 | 298 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18097-PA | 235 | GD18097-PA | 1..235 | 1..235 | 1203 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24136-PA | 246 | GJ24136-PA | 22..246 | 15..235 | 821 | 82.7 | Plus |
Dvir\GJ24137-PA | 356 | GJ24137-PA | 40..149 | 18..142 | 327 | 56.8 | Plus |
Dvir\GJ15073-PA | 196 | GJ15073-PA | 1..110 | 1..98 | 145 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12037-PA | 239 | GK12037-PA | 1..239 | 1..235 | 910 | 81.2 | Plus |
Dwil\GK12038-PA | 359 | GK12038-PA | 36..136 | 11..109 | 329 | 64.4 | Plus |
Dwil\GK14160-PA | 235 | GK14160-PA | 5..200 | 4..202 | 146 | 33.8 | Plus |
Translation from 132 to 839
> RE05963.hyp MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpr97Eb-PA | 235 | CG15884-PA | 1..235 | 1..235 | 1297 | 100 | Plus |
Cpr97Ea-PB | 363 | CG6131-PB | 35..212 | 11..214 | 352 | 43.9 | Plus |
Cpr97Ea-PA | 366 | CG6131-PA | 38..215 | 11..214 | 352 | 43.9 | Plus |
Cpr100A-PA | 241 | CG12045-PA | 10..221 | 12..210 | 227 | 33.6 | Plus |