BDGP Sequence Production Resources |
Search the DGRC for RE06383
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 63 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | comm2-RA |
Protein status: | RE06383.pep: gold |
Preliminary Size: | 1201 |
Sequenced Size: | 1531 |
Gene | Date | Evidence |
---|---|---|
CG7554 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7554 | 2002-04-22 | Blastp of sequenced clone |
CG7554 | 2003-01-01 | Sim4 clustering to Release 3 |
comm2 | 2008-04-29 | Release 5.5 accounting |
comm2 | 2008-08-15 | Release 5.9 accounting |
comm2 | 2008-12-18 | 5.12 accounting |
1531 bp (1531 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113389
> RE06383.complete AGTTTGTTTGTAGACTCAGACGTCGACGGACGTGTGCGTTCGTTTAAAGA AACCGGAGACTAAGAACGATCCACGAGATACAGATACCGATATCGCAGCA GTGAAAGTGTGCCGCAACGGATACAACAGCAGAGATATAGATACAAATAG AGATTACACCCGCCAGTCGACCGATATAAAAGTAAACCATGGAGGAATTG CCGCGCGCATTAAACTACGAACTCTCGCACGATTTGCATTTCGATCATTA CGCCGGTGCCGCAGCTCAGAAGATTCTGAACAGCGGGAGAAGTTCTCCTG AAGCGTCCACCCCGACCATCACCACATTGGATGCCATCTCCAGCAGTGAT TTCCTGAAACAGATTGGCCAGCAGATCCTCAGTTCCATCCAACTGAAACA TCAGCATCAGCTCAACGAAGTCAGCCATCCGAGGAATTCCACCAGCGAGG AGATCATGGATTTCGATCTGGCCAATCGGGTGATTCTGGACAGCAGCAGT GTGGATCAGCTGCAGCAGCAGTTGGAGTACGATAAATTCATGAACGAGGT GTGGATCGGCATCGTCTTCACCCTGATCCTCATCTCGATGGTCTTCTGCA TCTGCTCCTGCTTCCTGTACCATCAGTTCCGCACCTGGAAACGCAATTAT CGCAACAATGCAAATGGCTCGACGCAGTGCACCATTGTAGATATAGAGGC GTTGAAACTGCATCCGGATGTGGAGGATCCGGTTCCGGAATACACCCTAG TATCTGGATTGCCCAGCTACGAGGCGGCTCTGGAGCTGCTACAAAAATCC CCGCAGTCATCCTGCCTGATTGTCTATCCGAGTGTGTTCAATGTGTTCAA TAAGCAGGAGAGGAGCAGCCAGGAGCTGCAGCATCCAGGAGTTGCAACAT CAGCACCTCCAGCCGCACCCGAGAATCACCTGGCACCGCAGACACCTTCG TTTTGTGATGCCACAATGCCGCTGCTCCCAGCAACAACAGCAGCAGCAGC AACACATGCAGCAGCAACAGTAACAGCAGTAACAGCAGCAACAGCAACAT CTGCAACATTGGCAGCTTCGCCCACGTGCGAGTCGATTAAGCCAAACTTT GTGATGATGCCAATTGTGCCCAGTTATGCGGAGGTATTCGGCAGCTCGTA CAAAACCGTCGACGAGAAAAAGAAATCGAAGTCAAAAGACAGCCAGTCGA AAGACGATATCAAGCGGTAAAGGTAAAAGTGACGAGAATACGAATACGAA TACCTAGCCAAGCAACTGAGCTCTGTGATATTTTCATGTTCATGCTGGAA AGACATACCCATATGTAATTAAACTAAGCGCTGTGATTATCAAAAAGACG TAACTAAACATACTACTCGCTACTAAATGTGTTAGCTGAATAGTTTCGCC ACATTGTACTTAATGATATCGTATCCAGTACTTATGGAAACGCAAAGATG CATATTGTTACTAGACTTAAGTAGGCCACAAACTAATTATTAATAAATTA TACACCTAACAATTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fw2 | 3961 | Fw2 FW2 3961bp | 1204..1250 | 61..108 | 120 | 75 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15687452..15687908 | 1059..1515 | 100 | == | Minus |
chr3L | 15687989..15688318 | 649..978 | 99 | <- | Minus |
chr3L | 15689060..15689711 | 1..648 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1032 | 189..1220 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1032 | 189..1220 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1032 | 189..1220 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1032 | 189..1220 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1032 | 189..1220 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1515 | 1..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1515 | 1..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 2..1516 | 1..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 1..1515 | 1..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
comm2-RA | 2..1516 | 1..1515 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15697594..15698460 | 649..1515 | 100 | <- | Minus |
3L | 15699202..15699849 | 1..648 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15697594..15698460 | 649..1515 | 100 | <- | Minus |
3L | 15699202..15699849 | 1..648 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15697594..15698460 | 649..1515 | 100 | <- | Minus |
3L | 15699202..15699849 | 1..648 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15690694..15691560 | 649..1515 | 100 | <- | Minus |
arm_3L | 15692302..15692949 | 1..648 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15690694..15691560 | 649..1515 | 100 | <- | Minus |
3L | 15692302..15692949 | 1..648 | 99 | Minus |
Translation from 188 to 1219
> RE06383.pep MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10377-PA | 329 | GF10377-PA | 1..329 | 1..343 | 1176 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13522-PA | 342 | GG13522-PA | 1..340 | 1..343 | 1574 | 93.3 | Plus |
Dere\GG13532-PA | 425 | GG13532-PA | 144..255 | 113..229 | 210 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14476-PA | 338 | GH14476-PA | 1..332 | 1..342 | 1081 | 64.3 | Plus |
Dgri\GH23316-PA | 431 | GH23316-PA | 145..265 | 115..238 | 216 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
comm2-PA | 343 | CG7554-PA | 1..343 | 1..343 | 1762 | 100 | Plus |
comm3-PE | 423 | CG42334-PE | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm3-PD | 423 | CG42334-PD | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm-PB | 370 | CG17943-PB | 117..364 | 101..300 | 165 | 25.3 | Plus |
comm-PA | 370 | CG17943-PA | 117..364 | 101..300 | 165 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13622-PA | 333 | GI13622-PA | 1..315 | 1..326 | 986 | 66 | Plus |
Dmoj\GI13626-PA | 435 | GI13626-PA | 153..264 | 110..229 | 218 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25481-PA | 344 | GL25481-PA | 1..344 | 1..343 | 1300 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20435-PA | 348 | GA20435-PA | 1..348 | 1..343 | 1285 | 72.2 | Plus |
Dpse\GA17371-PA | 422 | GA17371-PA | 142..237 | 113..216 | 211 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24466-PA | 274 | GM24466-PA | 1..228 | 1..238 | 1160 | 92 | Plus |
Dsec\GM24476-PA | 423 | GM24476-PA | 144..255 | 113..229 | 209 | 33.1 | Plus |
Dsec\GM24465-PA | 370 | GM24465-PA | 117..272 | 101..233 | 166 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12539-PA | 339 | GD12539-PA | 1..339 | 1..343 | 1770 | 97.7 | Plus |
Dsim\GD12538-PA | 370 | GD12538-PA | 133..272 | 117..233 | 166 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13958-PA | 334 | GJ13958-PA | 1..328 | 1..343 | 1006 | 64.2 | Plus |
Dvir\GJ13964-PA | 439 | GJ13964-PA | 150..279 | 110..244 | 217 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20674-PA | 361 | GK20674-PA | 1..359 | 1..339 | 930 | 62.1 | Plus |
Dwil\GK20752-PA | 455 | GK20752-PA | 161..281 | 113..238 | 218 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19814-PA | 341 | GE19814-PA | 1..341 | 1..343 | 1496 | 92.1 | Plus |
Dyak\GE22823-PA | 339 | GE22823-PA | 1..339 | 1..343 | 1491 | 92.4 | Plus |
Dyak\GE14686-PA | 156 | GE14686-PA | 1..133 | 1..133 | 687 | 97 | Plus |
Dyak\GE19827-PA | 423 | GE19827-PA | 144..239 | 113..216 | 209 | 37.1 | Plus |
Dyak\GE19813-PA | 378 | GE19813-PA | 117..272 | 101..233 | 167 | 30.6 | Plus |
Translation from 188 to 1219
> RE06383.hyp MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
comm2-PA | 343 | CG7554-PA | 1..343 | 1..343 | 1762 | 100 | Plus |
comm3-PE | 423 | CG42334-PE | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm3-PD | 423 | CG42334-PD | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm-PB | 370 | CG17943-PB | 117..364 | 101..300 | 165 | 25.3 | Plus |
comm-PA | 370 | CG17943-PA | 117..364 | 101..300 | 165 | 25.3 | Plus |