BDGP Sequence Production Resources |
Search the DGRC for RE06389
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 63 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2310-RA |
Protein status: | RE06389.pep: gold |
Sequenced Size: | 1092 |
Gene | Date | Evidence |
---|---|---|
CG2310 | 2001-12-14 | Blastp of sequenced clone |
CG2310 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2310 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2310 | 2008-04-29 | Release 5.5 accounting |
CG2310 | 2008-08-15 | Release 5.9 accounting |
CG2310 | 2008-12-18 | 5.12 accounting |
1092 bp (1092 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070964
> RE06389.complete CAGTCGTTTCTTCGCCGCTCAACCGTTCGGTCGCTTCTTCGGTCGCCCGC CTATCGATATCGATAAACATACTCCTGCGAGCAGATACCATTCGCACGAT GTCGTACTACGCGGAGCGAGCCCTGTCCCTACTCTACCCGCTGGCCATCG TTTCATCGCTGGTCTGCTGCATCACCTCGGCGGTGGCCTGGACACACTGG CAGTACGTGCTCAATGCCTGCCCGGACACCAATTGCGGCTGCGTGCTGCA CGGCAAGAGCACGTTCCACAGCTTCGAGGGCGGCAACGTCGCCTACTGCC ACTTCGCCACCTACGGCCTGCTGCTGCCGCTGCTCTTCGCCGTCGTCCTG GGCGTCTACCACGGCTACCGCATGTGCATCGGTCGGGGCAAGCCCAAGGC GGGCACGGCCACCATCCGTCAGCGCTCCGGTGACATGATCGTGGTGACCA CCGAGTCGGAACTCACGCCCGATGGTCTCTCGCCCTACTACTGGCTGCCC GCCACCGTCATCTCGACAATAATGGCCGTCTACCAACTGGTCTACTCGGC CGTGTTCACGGATGGCTTCGAGGTGACTTGCAAGCAGTACAGGGAGTCGC TGCTGAAGGAGATCCAGGGCGTGGGCAACATTGTGCCCGTGATCAAGTCG CGGCTCTCGTGCGCCGCCGTCTTCGACTTCATGGACTATCTGGTGGAGAG CGTGTCGTACGAGCGGCGACGCTACGGGCGCATCAATACGGCCGCCTGCC TGTACTTCACCCTGGTCTTTGCCTGGATCGCACTGCTCGCATGGCTGCTC GTCTGCGTGATCAATGTCGTCCAGCTGCGGCGCACGAAGGCCGCCAGGGT CTGAGTCCTGCCATGAATCGGGAGGCGCGAGGTCCTCTACACTTTACATT CCACCTGTTCGCCTTTTAACTTATTTAGTTAGTTATAGTGACACACAAGC CAGAACGTCCACGTTATGAACGCATTGTACAAATAATATACATATGTATG AACAACGAGCGATTATTCACATCGCAAGCCTTTTCAATAAAATGACTATA ATTGCATTAAAGATATGCATGCATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2310-RA | 1227 | CG2310-RA | 93..1169 | 1..1077 | 5385 | 100 | Plus |
CG2310.a | 1227 | CG2310.a | 161..1169 | 69..1077 | 5045 | 100 | Plus |
CG2310-RB | 1314 | CG2310-RB | 254..1262 | 69..1077 | 5045 | 100 | Plus |
CG2310.a | 1227 | CG2310.a | 19..86 | 1..68 | 340 | 100 | Plus |
CG2310-RB | 1314 | CG2310-RB | 1..57 | 12..68 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25314125..25314727 | 1076..493 | 2545 | 95.2 | Minus |
chr3R | 27901430 | chr3R | 25315014..25315369 | 424..69 | 1720 | 98.9 | Minus |
chr3R | 27901430 | chr3R | 25316066..25316133 | 68..1 | 340 | 100 | Minus |
chr3R | 27901430 | chr3R | 25314788..25314857 | 493..424 | 335 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29491525..29492109 | 1077..493 | 2925 | 100 | Minus |
3R | 32079331 | 3R | 29492396..29492751 | 424..69 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 29492170..29492239 | 493..424 | 350 | 100 | Minus |
3R | 32079331 | 3R | 29493446..29493513 | 68..1 | 340 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29232356..29232940 | 1077..493 | 2925 | 100 | Minus |
3R | 31820162 | 3R | 29233227..29233582 | 424..69 | 1780 | 100 | Minus |
3R | 31820162 | 3R | 29233001..29233070 | 493..424 | 350 | 100 | Minus |
3R | 31820162 | 3R | 29234277..29234344 | 68..1 | 340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25314789..25314856 | 425..492 | 98 | <- | Minus |
chr3R | 25315014..25315369 | 69..424 | 98 | <- | Minus |
chr3R | 25316066..25316133 | 1..68 | 100 | Minus | |
chr3R | 25314125..25314315 | 888..1076 | 97 | <- | Minus |
chr3R | 25314331..25314727 | 493..887 | 97 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RB | 1..756 | 99..854 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RB | 1..756 | 99..854 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 1..756 | 99..854 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RB | 1..756 | 99..854 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 1..756 | 99..854 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 1..1076 | 1..1076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 1..1076 | 1..1076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 6..1081 | 1..1076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 1..1076 | 1..1076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2310-RA | 6..1081 | 1..1076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29493446..29493513 | 1..68 | 100 | Minus | |
3R | 29491526..29492109 | 493..1076 | 100 | <- | Minus |
3R | 29492171..29492238 | 425..492 | 100 | <- | Minus |
3R | 29492396..29492751 | 69..424 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29493446..29493513 | 1..68 | 100 | Minus | |
3R | 29491526..29492109 | 493..1076 | 100 | <- | Minus |
3R | 29492171..29492238 | 425..492 | 100 | <- | Minus |
3R | 29492396..29492751 | 69..424 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29493446..29493513 | 1..68 | 100 | Minus | |
3R | 29491526..29492109 | 493..1076 | 100 | <- | Minus |
3R | 29492171..29492238 | 425..492 | 100 | <- | Minus |
3R | 29492396..29492751 | 69..424 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25317248..25317831 | 493..1076 | 100 | <- | Minus |
arm_3R | 25317893..25317960 | 425..492 | 100 | <- | Minus |
arm_3R | 25318118..25318473 | 69..424 | 100 | <- | Minus |
arm_3R | 25319168..25319235 | 1..68 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29232357..29232940 | 493..1076 | 100 | <- | Minus |
3R | 29233002..29233069 | 425..492 | 100 | <- | Minus |
3R | 29233227..29233582 | 69..424 | 100 | <- | Minus |
3R | 29234277..29234344 | 1..68 | 100 | Minus |
Translation from 2 to 853
> RE06389.hyp VVSSPLNRSVASSVARLSISINILLRADTIRTMSYYAERALSLLYPLAIV SSLVCCITSAVAWTHWQYVLNACPDTNCGCVLHGKSTFHSFEGGNVAYCH FATYGLLLPLLFAVVLGVYHGYRMCIGRGKPKAGTATIRQRSGDMIVVTT ESELTPDGLSPYYWLPATVISTIMAVYQLVYSAVFTDGFEVTCKQYRESL LKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVESVSYERRRYGRINTAACL YFTLVFAWIALLAWLLVCVINVVQLRRTKAARV*
Translation from 98 to 853
> RE06389.pep MSYYAERALSLLYPLAIVSSLVCCITSAVAWTHWQYVLNACPDTNCGCVL HGKSTFHSFEGGNVAYCHFATYGLLLPLLFAVVLGVYHGYRMCIGRGKPK AGTATIRQRSGDMIVVTTESELTPDGLSPYYWLPATVISTIMAVYQLVYS AVFTDGFEVTCKQYRESLLKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVE SVSYERRRYGRINTAACLYFTLVFAWIALLAWLLVCVINVVQLRRTKAAR V*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22887-PA | 251 | GF22887-PA | 1..251 | 1..251 | 1244 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12016-PA | 251 | GG12016-PA | 1..251 | 1..251 | 1281 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18697-PA | 251 | GH18697-PA | 1..251 | 1..251 | 1128 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2310-PB | 251 | CG2310-PB | 1..251 | 1..251 | 1323 | 100 | Plus |
CG2310-PA | 251 | CG2310-PA | 1..251 | 1..251 | 1323 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24464-PA | 251 | GI24464-PA | 1..251 | 1..251 | 1154 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13589-PA | 251 | GL13589-PA | 1..251 | 1..251 | 1185 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15346-PA | 251 | GA15346-PA | 1..251 | 1..251 | 1185 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12241-PA | 251 | GM12241-PA | 1..251 | 1..251 | 1316 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17764-PA | 251 | GD17764-PA | 1..251 | 1..251 | 1317 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10557-PA | 251 | GJ10557-PA | 1..251 | 1..251 | 1202 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11182-PA | 251 | GK11182-PA | 1..251 | 1..251 | 1180 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10452-PA | 251 | GE10452-PA | 1..251 | 1..251 | 1268 | 92.4 | Plus |