BDGP Sequence Production Resources |
Search the DGRC for RE06652
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 66 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31360-RA |
Protein status: | RE06652.pep: gold |
Sequenced Size: | 649 |
Gene | Date | Evidence |
---|---|---|
CG7660 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31360 | 2002-04-21 | Blastp of sequenced clone |
CG31360 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31360 | 2008-04-29 | Release 5.5 accounting |
CG31360 | 2008-08-15 | Release 5.9 accounting |
CG31360 | 2008-12-18 | 5.12 accounting |
649 bp (649 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113390
> RE06652.complete AGTTATCGCCTTATTTTCCAAATCCATTCCCAAATTGTTATTATTGAAAT AATTTTAAAAATGATCGGTAGACTTTCTTTTTGGAACAAGGACAACGTTT CCAACGAGGTGGACTGCTTGGCCTGCCGTCTGGTCAGTGGCCTTGGACTC CTGGGAATTGGTGCCTTCCTATTGGCACAGTCGAAAAAAAGACAAGCGAA ACCTCTGGAGAATTTCACTATGAAAGGCTTGGCTGCAGCCGTTGGAGTTC TGGGCGTGGCCCGCCTGGCAGACGCGAATTTCCTGAAGGCAACCGCCGAG AAGCCAAAAGAACAGGAAAATACTAGCACTGATCATCAGTTCTTTTCTAG ACGTTAATTCAATGACGTTTTAATTATAATCGTAGAGTCACTTAATATAT AAAGGTTAATGTTTTCTTTTGTACGACCATGTGGCATTACAATAATATAG CTGTAACCTTGTTTTTAGAATTTTTTCTATTTAAAATCGTTGAAAACAAA ACCTTGTTTGCTTTAATGAATTTATGATTTATTTTAAATAAATTAATTAC ATAGGCATACACAATATTGCATCTTTTGAAAGAGGATCATAAATAAACAT ATGTTTGTATTAATAATAATATTATAAAATATCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 8210..8328 | 631..518 | 142 | 65 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1081..1188 | 631..520 | 126 | 61.9 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1067..1245 | 631..455 | 122 | 56.4 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1154..1250 | 631..532 | 121 | 65.7 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1132..1243 | 626..514 | 120 | 60.9 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 132..199 | 512..580 | 117 | 65.2 | Plus |
Tc3 | 1743 | Tc3 TC3 1743bp | 274..320 | 631..585 | 109 | 70.2 | Minus |
invader6 | 4885 | invader6 INVADER6 4885bp | 1547..1573 | 601..627 | 108 | 88.9 | Plus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 284..325 | 589..632 | 107 | 75 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 509..625 | 516..632 | 107 | 56.8 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1140..1256 | 631..515 | 106 | 60 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 13509454..13509691 | 1..238 | 99 | -> | Plus |
chr3R | 13509754..13510122 | 239..607 | 91 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 1..297 | 61..357 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 1..297 | 61..357 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 1..297 | 61..357 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 1..297 | 61..357 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 1..297 | 61..357 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 12..644 | 1..633 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 12..644 | 1..633 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 17..649 | 1..633 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 12..644 | 1..633 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31360-RA | 17..649 | 1..633 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685113..17685350 | 1..238 | 99 | -> | Plus |
3R | 17685413..17685807 | 239..633 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685113..17685350 | 1..238 | 99 | -> | Plus |
3R | 17685413..17685807 | 239..633 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17685113..17685350 | 1..238 | 99 | -> | Plus |
3R | 17685413..17685807 | 239..633 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 13511135..13511529 | 239..633 | 100 | Plus | |
arm_3R | 13510835..13511072 | 1..238 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17425944..17426181 | 1..238 | 99 | -> | Plus |
3R | 17426244..17426638 | 239..633 | 100 | Plus |
Translation from 0 to 356
> RE06652.hyp SCRLIFQIHSQIVIIEIILKMIGRLSFWNKDNVSNEVDCLACRLVSGLGL LGIGAFLLAQSKKRQAKPLENFTMKGLAAAVGVLGVARLADANFLKATAE KPKEQENTSTDHQFFSRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31360-PA | 98 | CG31360-PA | 1..98 | 21..118 | 496 | 100 | Plus |
Translation from 60 to 356
> RE06652.pep MIGRLSFWNKDNVSNEVDCLACRLVSGLGLLGIGAFLLAQSKKRQAKPLE NFTMKGLAAAVGVLGVARLADANFLKATAEKPKEQENTSTDHQFFSRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17826-PA | 101 | GF17826-PA | 1..101 | 1..98 | 298 | 67.6 | Plus |
Dana\GF19109-PA | 125 | GF19109-PA | 1..70 | 1..71 | 264 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22448-PA | 102 | GG22448-PA | 1..102 | 1..98 | 451 | 84.3 | Plus |
Dere\GG17631-PA | 94 | GG17631-PA | 1..94 | 1..98 | 197 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18103-PA | 96 | GH18103-PA | 1..96 | 1..97 | 306 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31360-PA | 98 | CG31360-PA | 1..98 | 1..98 | 496 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24603-PA | 96 | GI24603-PA | 1..96 | 1..97 | 325 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22124-PA | 102 | GL22124-PA | 1..102 | 1..98 | 291 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16208-PA | 102 | GA16208-PA | 1..102 | 1..98 | 297 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15258-PA | 98 | GM15258-PA | 1..98 | 1..98 | 467 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15168-PA | 98 | GD15168-PA | 1..98 | 1..98 | 467 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22666-PA | 96 | GJ22666-PA | 1..96 | 1..97 | 332 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13494-PA | 112 | GK13494-PA | 1..81 | 1..87 | 243 | 64.4 | Plus |