Clone RE06653 Report

Search the DGRC for RE06653

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:66
Well:53
Vector:pFlc-1
Associated Gene/TranscriptCG12091-RA
Protein status:RE06653.pep: gold
Preliminary Size:1224
Sequenced Size:1835

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12091 2002-01-01 Sim4 clustering to Release 2
CG12091 2002-06-10 Blastp of sequenced clone
CG12091 2003-01-01 Sim4 clustering to Release 3
CG12091 2008-04-29 Release 5.5 accounting
CG12091 2008-08-15 Release 5.9 accounting
CG12091 2008-12-18 5.12 accounting

Clone Sequence Records

RE06653.complete Sequence

1835 bp (1835 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121659

> RE06653.complete
AGTTCTGAACCGGATCGCGACCTGACGAGAAAAAGTGTATCACTTCATCA
CATAACATTTCGCATTTAATTGGAACGTAAATTGTGTGCCCCGTCGAGAC
AGGAGTTTTGCACCGGAAAAAACGAGTGCGGAGGAGTGGCGTGTAGGAGT
GAACGCCAAGGAGGAGCACTCCGACGTCGTAACAAACGAATAAAACGAAT
CCAAATCCGACACCCCCCCACATGCGATTGATTTGATTGATTGAGAGCAC
GAGACCACGAGTTCTGGGCGATGCACTCGTCACTCAGCTGGACCTCGCGT
GCGATCTCTCGCGCCCTGCGCAGCAGCTTCTCCACGCTCCTGGAAACGGC
CACGGGTGGCGGAAGTGGGGCAGCAGCCAAGGGGGCCACCAAGTCGGGAG
CGACACCAGGATCCTCGGGCGCCCCACGACCCCGTTTCGTGTCGGTGGTG
TGCGGCTTCGCCAAGGACAACCTGCGACACAAGTACAAGCCGGGAAAGTA
CGGCGAGGACTCATGGTTCAAGGCCTCCACCGCCAGTGCCGATGTCATGG
GCGTGGCCGACGGCGTGGGCGGCTGGCGAAGCTATGGCATCGATCCCGGA
GAGTTTTCATCGTTCCTGATGCGCACCTGTGAGCGGTTGGTGCAGTGCAG
CCACTTTAATCCCCAACGACCAGTCAACCTGCTGGCCTACAGCTACTGCG
AGCTGATGGAGCAGAAGAAGCCCATACTGGGCAGCAGCACCGCCTGCGTC
CTGATCCTCAACCGTGAGACGAGCACCGTGCACACGGCCAACATCGGCGA
CAGCGGCTTCGTTGTGGTGCGCGAAGGCCAGGTGGTTCACAAGTCCGAGG
AGCAGCAGCACTATTTTAACACACCCTTCCAACTGTCATTGCCGCCGCCG
GGACATGGGCCCAATGTCCTCAGCGACAGCCCTGAGTCGGCGGACACGAT
GAGCTTTCCGGTGCGGGATGGCGACGTGATTCTCATTGCAACCGACGGAG
TGTTCGACAACGTGCCCGAGGATCTAATGCTGCAGGTGCTTAGCGAGGTG
GAGGGCGAACGCGATCCCGTCAAGCTCCAGATGACGGCCAACAGCCTGGC
GCTGATGGCGCGCACCCTGTCCCTCAACAGCGAGTTCCTCTCGCCCTTCG
CCCTCAGCGCCAGGAGGAATAACATTCAGGCGCGTGGCGGCAAGCCGGAC
GACATCACCGTTGTCCTGGCCACCGTGGCGATGTGAGAGTGGTGCTCCAG
CCCATCCTCCCTAGTGATTAACGTTTACTTGTAGTCCGTACGTGTTTAGT
TAGCTTTAGGAGCCAGTTTCGTGGTTCTGTCTACCGTTTAAGCTGCATGT
TGAGATTGAGATTGTGATTGACGAGGACGACGACCCTTTGACCCTTTGCA
TTGTTAGTTACATATATACGAGCAAACTCATTTTCGAACCGACGAATCGA
CTTCGACGCATCCTGGTGAGCGACCCGCGCCTCGATTGTATACATAACCC
TCGCTATAAGTAGAGAATGCGAATTATCTGCCCGATCTGGCGATCTCTGT
CGTCAGTGGCGTTCTAATCACCACAAACAATAAACAAACAACCGATTGCG
AAACAATCCCCGACGCCGAGGATCATAAATACGAGTCCGGGGTCCGGATG
ATGGAAGCTGGATGGATGGTGGACCCGGAATGGAGCGAGTCGAGTGCAGC
TATCTGACTGAGGACGGAGGATTACCCATTTACGCGGGCGAACGAACTGT
CTTTAAACAATTTTTGTCGAAATGTACTCACTGATATTTGCGACCCAATA
AAATTTATTCAATGAAAAACAAAAAAAAAAAAAAA

RE06653.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-RA 1903 CG12091-RA 1..1822 1..1822 9110 100 Plus
nc_9904.a 826 nc_9904.a 1..559 960..402 2795 100 Minus
nc_9904.a 826 nc_9904.a 557..826 293..24 1350 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1534499..1536318 1820..1 8995 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1535010..1536831 1822..1 9110 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1535010..1536831 1822..1 9110 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:00:21 has no hits.

RE06653.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:01:31 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1534499..1536318 1..1820 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:49:58 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 271..1236 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:26:33 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 271..1236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:48:18 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 271..1236 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:16:59 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 271..1236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:22:56 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..966 271..1236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:54:55 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..1820 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:26:32 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..1820 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:18 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 5..1824 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:00 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 1..1820 1..1820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:22:56 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
CG12091-RA 5..1824 1..1820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:31 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1535012..1536831 1..1820 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:31 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1535012..1536831 1..1820 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:31 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1535012..1536831 1..1820 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:18 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1535012..1536831 1..1820 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:50:20 Download gff for RE06653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1535012..1536831 1..1820 100   Minus

RE06653.pep Sequence

Translation from 270 to 1235

> RE06653.pep
MHSSLSWTSRAISRALRSSFSTLLETATGGGSGAAAKGATKSGATPGSSG
APRPRFVSVVCGFAKDNLRHKYKPGKYGEDSWFKASTASADVMGVADGVG
GWRSYGIDPGEFSSFLMRTCERLVQCSHFNPQRPVNLLAYSYCELMEQKK
PILGSSTACVLILNRETSTVHTANIGDSGFVVVREGQVVHKSEEQQHYFN
TPFQLSLPPPGHGPNVLSDSPESADTMSFPVRDGDVILIATDGVFDNVPE
DLMLQVLSEVEGERDPVKLQMTANSLALMARTLSLNSEFLSPFALSARRN
NIQARGGKPDDITVVLATVAM*

RE06653.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25028-PA 324 GF25028-PA 1..324 1..321 1533 92.6 Plus
Dana\GF21131-PA 460 GF21131-PA 194..460 55..320 936 65.2 Plus
Dana\GF22865-PA 332 GF22865-PA 46..327 38..321 654 47.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14592-PA 321 GG14592-PA 1..321 1..321 1673 97.5 Plus
Dere\GG17623-PA 375 GG17623-PA 105..374 51..319 938 63.7 Plus
Dere\GG12003-PA 317 GG12003-PA 46..314 54..321 626 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15200-PA 311 GH15200-PA 1..311 1..321 1511 88.2 Plus
Dgri\GH12845-PA 343 GH12845-PA 1..340 1..318 914 52.6 Plus
Dgri\GH13984-PA 307 GH13984-PA 29..302 48..321 655 46.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-PB 321 CG12091-PB 1..321 1..321 1657 100 Plus
CG12091-PA 321 CG12091-PA 1..321 1..321 1657 100 Plus
CG15035-PA 374 CG15035-PA 107..373 54..319 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 54..319 607 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16719-PA 311 GI16719-PA 1..311 1..321 1509 89.1 Plus
Dmoj\GI14148-PA 311 GI14148-PA 1..311 1..321 1509 89.1 Plus
Dmoj\GI14933-PA 348 GI14933-PA 1..347 1..319 932 53.3 Plus
Dmoj\GI22329-PA 312 GI22329-PA 36..306 54..319 641 46.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22485-PA 211 GL22485-PA 1..207 1..215 977 85.1 Plus
Dper\GL23811-PA 326 GL23811-PA 39..316 44..321 553 43.5 Plus
Dper\GL14622-PA 653 GL14622-PA 401..652 50..319 432 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11388-PA 313 GA11388-PA 1..313 1..321 1529 89.7 Plus
Dpse\GA20482-PA 340 GA20482-PA 67..316 74..321 625 50 Plus
Dpse\GA28301-PA 498 GA28301-PA 245..497 50..319 416 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14206-PA 321 GM14206-PA 1..321 1..321 1690 98.8 Plus
Dsec\GM17470-PA 374 GM17470-PA 107..374 54..320 885 60.1 Plus
Dsec\GM12223-PA 314 GM12223-PA 34..311 46..321 630 46.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13469-PA 321 GD13469-PA 1..321 1..321 1695 99.1 Plus
Dsim\GD17671-PA 314 GD17671-PA 43..311 54..321 620 46.3 Plus
Dsim\GD24581-PA 197 GD24581-PA 107..192 54..138 277 55.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12462-PA 311 GJ12462-PA 1..311 1..321 1513 89.7 Plus
Dvir\GJ18963-PA 348 GJ18963-PA 66..347 39..319 912 59.2 Plus
Dvir\GJ10517-PA 313 GJ10517-PA 36..309 54..321 644 46.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17200-PA 317 GK17200-PA 1..317 1..321 1491 88.5 Plus
Dwil\GK16148-PA 359 GK16148-PA 90..358 52..319 981 66.2 Plus
Dwil\GK19179-PA 315 GK19179-PA 29..311 41..321 669 48.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20952-PA 321 GE20952-PA 1..321 1..321 1679 97.8 Plus
Dyak\GE17524-PA 372 GE17524-PA 105..371 54..319 962 65.2 Plus
Dyak\GE10429-PA 320 GE10429-PA 49..317 54..321 607 46 Plus

RE06653.hyp Sequence

Translation from 270 to 1235

> RE06653.hyp
MHSSLSWTSRAISRALRSSFSTLLETATGGGSGAAAKGATKSGATPGSSG
APRPRFVSVVCGFAKDNLRHKYKPGKYGEDSWFKASTASADVMGVADGVG
GWRSYGIDPGEFSSFLMRTCERLVQCSHFNPQRPVNLLAYSYCELMEQKK
PILGSSTACVLILNRETSTVHTANIGDSGFVVVREGQVVHKSEEQQHYFN
TPFQLSLPPPGHGPNVLSDSPESADTMSFPVRDGDVILIATDGVFDNVPE
DLMLQVLSEVEGERDPVKLQMTANSLALMARTLSLNSEFLSPFALSARRN
NIQARGGKPDDITVVLATVAM*

RE06653.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12091-PB 321 CG12091-PB 1..321 1..321 1657 100 Plus
CG12091-PA 321 CG12091-PA 1..321 1..321 1657 100 Plus
CG15035-PA 374 CG15035-PA 107..373 54..319 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 54..319 607 45.5 Plus