BDGP Sequence Production Resources |
Search the DGRC for RE06857
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 68 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpL22-RA |
Protein status: | RE06857.pep: gold |
Preliminary Size: | 640 |
Sequenced Size: | 968 |
Gene | Date | Evidence |
---|---|---|
CG4742 | 2001-12-14 | Blastp of sequenced clone |
CG4742 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4742 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpL22 | 2008-04-29 | Release 5.5 accounting |
mRpL22 | 2008-08-15 | Release 5.9 accounting |
mRpL22 | 2008-12-18 | 5.12 accounting |
968 bp (968 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070969
> RE06857.complete GCATACCTGCTGCCATTGGTCACACTGGCAGATTACGCGATTATTTTTTT TACGGAAAGTCTGCGTTTTCCCTTCCGGATTGAATTGCCTGGATTTGCTG TGATAACTCAAGCAAGCTAAGATGCACAAGGTGATCCGGCAAATGTCCCA GCTGCGCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATA GCAGCTCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAG TCGAAATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTG GAACAAGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCG TGCATCCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGC CACATGCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGC TGCCTTTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACT TTGTGCTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCC CAGCAAATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTG GATAGCCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGC GGCATGCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTAC TTCGTGCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCC GCAGACGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCC GGAAGATCATCAACTCGCTGTAGCCACCTGAATTGGCACTCGTATGCAAT CGATCCGCACTCCTGCAGTCCTCCATCGCCATCGCGTCCACGCGCATTAA GCATTTTTTTTGGTTTTAGAAGATTGTTTAATAAAATAGAAACAGACAAA AGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL22-RA | 1059 | mRpL22-RA | 66..1019 | 1..954 | 4770 | 100 | Plus |
mRpL22.b | 1072 | mRpL22.b | 5..609 | 1..605 | 3025 | 100 | Plus |
mRpL22.a | 722 | mRpL22.a | 5..609 | 1..605 | 3025 | 100 | Plus |
mRpL22.b | 1072 | mRpL22.b | 722..1072 | 604..954 | 1755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16673588..16673978 | 1..391 | 1955 | 100 | Plus |
chrX | 22417052 | chrX | 16674378..16674726 | 604..952 | 1745 | 100 | Plus |
chrX | 22417052 | chrX | 16674052..16674265 | 392..605 | 1055 | 99.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16673588..16673978 | 1..391 | 100 | -> | Plus |
chrX | 16674052..16674265 | 392..605 | 99 | -> | Plus |
chrX | 16674380..16674726 | 606..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..702 | 122..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..702 | 122..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..702 | 122..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..702 | 122..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..702 | 122..823 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..952 | 1..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..952 | 1..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 22..973 | 1..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 1..952 | 1..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL22-RA | 22..973 | 1..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16783954..16784344 | 1..391 | 100 | -> | Plus |
X | 16784418..16784631 | 392..605 | 100 | -> | Plus |
X | 16784746..16785092 | 606..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16783954..16784344 | 1..391 | 100 | -> | Plus |
X | 16784418..16784631 | 392..605 | 100 | -> | Plus |
X | 16784746..16785092 | 606..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16783954..16784344 | 1..391 | 100 | -> | Plus |
X | 16784418..16784631 | 392..605 | 100 | -> | Plus |
X | 16784746..16785092 | 606..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16678451..16678664 | 392..605 | 100 | -> | Plus |
arm_X | 16677987..16678377 | 1..391 | 100 | -> | Plus |
arm_X | 16678779..16679125 | 606..952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16792052..16792442 | 1..391 | 100 | -> | Plus |
X | 16792516..16792729 | 392..605 | 100 | -> | Plus |
X | 16792844..16793190 | 606..952 | 100 | Plus |
Translation from 121 to 822
> RE06857.hyp MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL22-PA | 233 | CG4742-PA | 1..233 | 1..233 | 1239 | 100 | Plus |
Translation from 121 to 822
> RE06857.pep MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22663-PA | 232 | GF22663-PA | 1..232 | 1..233 | 986 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19077-PA | 232 | GG19077-PA | 1..232 | 1..233 | 1189 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24048-PA | 228 | GH24048-PA | 1..228 | 1..233 | 995 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL22-PA | 233 | CG4742-PA | 1..233 | 1..233 | 1239 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15151-PA | 231 | GI15151-PA | 1..231 | 1..233 | 986 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26864-PA | 233 | GL26864-PA | 1..233 | 1..233 | 1000 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18397-PA | 233 | GA18397-PA | 1..233 | 1..233 | 1001 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13465-PA | 231 | GM13465-PA | 1..231 | 1..233 | 1218 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17306-PA | 231 | GD17306-PA | 1..231 | 1..233 | 1214 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19341-PA | 232 | GJ19341-PA | 1..232 | 1..233 | 935 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14752-PA | 240 | GK14752-PA | 1..240 | 1..233 | 983 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17623-PA | 232 | GE17623-PA | 1..232 | 1..233 | 1202 | 95.7 | Plus |