BDGP Sequence Production Resources |
Search the DGRC for RE06930
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 69 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13005-RA |
Protein status: | RE06930.pep: gold |
Preliminary Size: | 1443 |
Sequenced Size: | 2019 |
Gene | Date | Evidence |
---|---|---|
CG13005 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13005 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13005 | 2003-01-22 | Blastp of sequenced clone |
CG13005 | 2008-04-29 | Release 5.5 accounting |
CG13005 | 2008-08-15 | Release 5.9 accounting |
CG13005 | 2008-12-18 | 5.12 accounting |
2019 bp (2019 high quality bases) assembled on 2003-01-22
GenBank Submission: BT003537
> RE06930.complete AAAATAACACGAAATCCGATTCGGTTTTGTTCATAGATTTGTTTTTATGT TTATTTGTAACCACCAAACGTGGCTGGCCAATGAAGCATCTCCTGGAGGA TCCCTCGGTCCTGGCCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTG TACAGGATCGACAGGAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCC GACGAAGATTTGCCGGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATAC TCTGGGCCAGCTGGCCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACA TAGTCATCGATCGAAAGCGCCATCAGGTGATTCGCACAGATGCGGCTACG CAACAATTAACGATTTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCG CCCGGCGATAGAGAAAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGAC CATCGAAAAGAGCCTGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCA ACACTAGCGGAGCAAAAACCTGCTCCCGACACCCATCGCACTAGATCCGG TCGCCAGGTGCGCAGCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCT CAGCGGTTGAGCCAAGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGAC TTGCGGGACAAGGACTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAG TGTCAGCAGCAGCGTCAGTATAAGCCAGGAACCGACCACAACGACAACCA TCCAACGAGCCGTGCCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATC TTTTTGGGACGCCGTCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACAT GCCGCGTCCGGGCGAGCAGACACCACCTGTAGCTGTAGCTACAGTACCAT CAACGGTTCATCCTCCCTCCACGCCGTCGCTGTTCGGCCTTCTGACCGCC CAACTGCAGCGGCATTCCCATCTCAGCGAGGAACAGCGCTCTGATCTCTT TCTTAACGAACTTAACGACTTTGTGGAGCAGCTGCAATTGCGCAGCCAAC GGCTTATACGGAATACCTCTGGACTGCATTTTGTAAATGCACGAATTGCA CGAGTTTTGGGCATACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCAT GGAGTCGCCGCTGGCACCGATGCCGGAATCAGAGGGAGCGGCCTTGGTTG CCGGCAGCGGTAGTGAAGGAGCCCGCAATCTGGTGGTCTACGCAGAGTTG AGCATGTCGCTGGACGATCCGCTCACAGACGAGGCTGCACAGCGTCTCAA TCTATCGGCGGGCGGTCAACTTCATCCGCCTTCCGAGGAGAGTCTGCTTA GAAACGTCAGCGATCTTATGCAGCCGCCAGTGGCAACTGCTCCTCCGACT GTGAACCATGGCTACGATCATGCCAGCGATAATGCCGTGGAGGCCCTGAC CATGAAGGAAACGCCCAACACAGAGGCTATTCTCGATCTCAACGTGGACT TCTTCCAGTTCAATCCGAATTAGAAGGGACAAATGTATAGAAAGCGCTTA GCTAGCAATGGAGATGAAGAATTCTATGATAGAGTGAAAGGTATTTCAAC TACTTTTTAACTTGAACACTGAAAAGGTTCTAAAATATGAAAGTTTAAAA CATTTATTTTATTTATCGTGCATATTGCATGAAGAAAGTCTCTGAAAATT GAAACGAACTTTTCTAAGTAGATTAAAATGTATTAATGGAGTATGTAAAT ATAGAAATAGGGATCTCTTAGATACATTTTGGTATTGTATTTTGAATTTT TACTGAATATTAATATTGAAATTGTATAATTTGAAAAGTAACCTCATATA ACCTCCAGCCAAAAATCTATGCAATTAGTACGCAAATGTAAATGGTTGAG TGGCAAAAATGCCGCATGCGGATGGAGATTATTTATGAAGTACTTAACTG GCTAACGAAAGATGCCTATTAAATGAATTTATCTTCCTTGATTTTTGAAA AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13005-RA | 2024 | CG13005-RA | 28..2024 | 1..1997 | 9985 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hopper2 | 1593 | hopper2 HOPPER2 1593bp | 15..61 | 1836..1789 | 120 | 75 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16693331..16693643 | 1..313 | 100 | -> | Plus |
chrX | 16693722..16695405 | 314..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1443 | 81..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1443 | 81..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1443 | 81..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1443 | 81..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1443 | 81..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1523 | 1..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1997 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 8..2004 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 1..1523 | 1..1523 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13005-RA | 31..2027 | 1..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16803680..16803992 | 1..313 | 100 | -> | Plus |
X | 16804071..16805754 | 314..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16803680..16803992 | 1..313 | 100 | -> | Plus |
X | 16804071..16805754 | 314..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16803680..16803992 | 1..313 | 100 | -> | Plus |
X | 16804071..16805754 | 314..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16697713..16698025 | 1..313 | 100 | -> | Plus |
arm_X | 16698104..16699787 | 314..1997 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16811778..16812090 | 1..313 | 100 | -> | Plus |
X | 16812169..16813852 | 314..1997 | 100 | Plus |
Translation from 2 to 1522
> RE06930.hyp NNTKSDSVLFIDLFLCLFVTTKRGWPMKHLLEDPSVLAELQVLPDKTGGV QDRQEAAKNPAENSVPDEDLPAAGGDLLRVKDTLGQLACSLHKLSKNDHI VIDRKRHQVIRTDAATQQLTIYRCPDPAVMGIRPAIEKNAQNPPAKVGRP SKRACSVATAPVAKKPTLAEQKPAPDTHRTRSGRQVRSLMPQPAPVTSGS AVEPSSARMLEMLVADLRDKDYRAPMAAPKSTSVSSSVSISQEPTTTTTI QRAVPKNAVCPGCGKIFLGRRLQRHFVKFPEHMPRPGEQTPPVAVATVPS TVHPPSTPSLFGLLTAQLQRHSHLSEEQRSDLFLNELNDFVEQLQLRSQR LIRNTSGLHFVNARIARVLGIPEGQYALDMSAMESPLAPMPESEGAALVA GSGSEGARNLVVYAELSMSLDDPLTDEAAQRLNLSAGGQLHPPSEESLLR NVSDLMQPPVATAPPTVNHGYDHASDNAVEALTMKETPNTEAILDLNVDF FQFNPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13005-PA | 480 | CG13005-PA | 1..480 | 27..506 | 2457 | 100 | Plus |
Translation from 80 to 1522
> RE06930.pep MKHLLEDPSVLAELQVLPDKTGGVQDRQEAAKNPAENSVPDEDLPAAGGD LLRVKDTLGQLACSLHKLSKNDHIVIDRKRHQVIRTDAATQQLTIYRCPD PAVMGIRPAIEKNAQNPPAKVGRPSKRACSVATAPVAKKPTLAEQKPAPD THRTRSGRQVRSLMPQPAPVTSGSAVEPSSARMLEMLVADLRDKDYRAPM AAPKSTSVSSSVSISQEPTTTTTIQRAVPKNAVCPGCGKIFLGRRLQRHF VKFPEHMPRPGEQTPPVAVATVPSTVHPPSTPSLFGLLTAQLQRHSHLSE EQRSDLFLNELNDFVEQLQLRSQRLIRNTSGLHFVNARIARVLGIPEGQY ALDMSAMESPLAPMPESEGAALVAGSGSEGARNLVVYAELSMSLDDPLTD EAAQRLNLSAGGQLHPPSEESLLRNVSDLMQPPVATAPPTVNHGYDHASD NAVEALTMKETPNTEAILDLNVDFFQFNPN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21748-PA | 464 | GF21748-PA | 1..464 | 1..480 | 1418 | 64.9 | Plus |
Dana\GF22698-PA | 53 | GF22698-PA | 1..53 | 430..480 | 238 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19081-PA | 480 | GG19081-PA | 1..480 | 1..480 | 2161 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11923-PA | 599 | GH11923-PA | 393..598 | 280..478 | 791 | 78.3 | Plus |
Dgri\GH11923-PA | 599 | GH11923-PA | 92..321 | 38..258 | 467 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13005-PA | 480 | CG13005-PA | 1..480 | 1..480 | 2457 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15344-PA | 599 | GI15344-PA | 396..599 | 280..480 | 720 | 77 | Plus |
Dmoj\GI15344-PA | 599 | GI15344-PA | 109..314 | 56..258 | 465 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16514-PA | 447 | GL16514-PA | 33..447 | 56..480 | 1447 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11971-PA | 447 | GA11971-PA | 33..447 | 56..480 | 1443 | 69.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13470-PA | 482 | GM13470-PA | 1..482 | 1..480 | 2215 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17310-PA | 482 | GD17310-PA | 1..482 | 1..480 | 2239 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19316-PA | 586 | GJ19316-PA | 119..586 | 43..480 | 1209 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25828-PA | 463 | GK25828-PA | 34..463 | 56..480 | 1329 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17628-PA | 481 | GE17628-PA | 1..481 | 1..480 | 2097 | 88.2 | Plus |