Clone RE06930 Report

Search the DGRC for RE06930

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:69
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG13005-RA
Protein status:RE06930.pep: gold
Preliminary Size:1443
Sequenced Size:2019

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13005 2002-01-01 Sim4 clustering to Release 2
CG13005 2003-01-01 Sim4 clustering to Release 3
CG13005 2003-01-22 Blastp of sequenced clone
CG13005 2008-04-29 Release 5.5 accounting
CG13005 2008-08-15 Release 5.9 accounting
CG13005 2008-12-18 5.12 accounting

Clone Sequence Records

RE06930.complete Sequence

2019 bp (2019 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003537

> RE06930.complete
AAAATAACACGAAATCCGATTCGGTTTTGTTCATAGATTTGTTTTTATGT
TTATTTGTAACCACCAAACGTGGCTGGCCAATGAAGCATCTCCTGGAGGA
TCCCTCGGTCCTGGCCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTG
TACAGGATCGACAGGAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCC
GACGAAGATTTGCCGGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATAC
TCTGGGCCAGCTGGCCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACA
TAGTCATCGATCGAAAGCGCCATCAGGTGATTCGCACAGATGCGGCTACG
CAACAATTAACGATTTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCG
CCCGGCGATAGAGAAAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGAC
CATCGAAAAGAGCCTGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCA
ACACTAGCGGAGCAAAAACCTGCTCCCGACACCCATCGCACTAGATCCGG
TCGCCAGGTGCGCAGCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCT
CAGCGGTTGAGCCAAGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGAC
TTGCGGGACAAGGACTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAG
TGTCAGCAGCAGCGTCAGTATAAGCCAGGAACCGACCACAACGACAACCA
TCCAACGAGCCGTGCCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATC
TTTTTGGGACGCCGTCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACAT
GCCGCGTCCGGGCGAGCAGACACCACCTGTAGCTGTAGCTACAGTACCAT
CAACGGTTCATCCTCCCTCCACGCCGTCGCTGTTCGGCCTTCTGACCGCC
CAACTGCAGCGGCATTCCCATCTCAGCGAGGAACAGCGCTCTGATCTCTT
TCTTAACGAACTTAACGACTTTGTGGAGCAGCTGCAATTGCGCAGCCAAC
GGCTTATACGGAATACCTCTGGACTGCATTTTGTAAATGCACGAATTGCA
CGAGTTTTGGGCATACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCAT
GGAGTCGCCGCTGGCACCGATGCCGGAATCAGAGGGAGCGGCCTTGGTTG
CCGGCAGCGGTAGTGAAGGAGCCCGCAATCTGGTGGTCTACGCAGAGTTG
AGCATGTCGCTGGACGATCCGCTCACAGACGAGGCTGCACAGCGTCTCAA
TCTATCGGCGGGCGGTCAACTTCATCCGCCTTCCGAGGAGAGTCTGCTTA
GAAACGTCAGCGATCTTATGCAGCCGCCAGTGGCAACTGCTCCTCCGACT
GTGAACCATGGCTACGATCATGCCAGCGATAATGCCGTGGAGGCCCTGAC
CATGAAGGAAACGCCCAACACAGAGGCTATTCTCGATCTCAACGTGGACT
TCTTCCAGTTCAATCCGAATTAGAAGGGACAAATGTATAGAAAGCGCTTA
GCTAGCAATGGAGATGAAGAATTCTATGATAGAGTGAAAGGTATTTCAAC
TACTTTTTAACTTGAACACTGAAAAGGTTCTAAAATATGAAAGTTTAAAA
CATTTATTTTATTTATCGTGCATATTGCATGAAGAAAGTCTCTGAAAATT
GAAACGAACTTTTCTAAGTAGATTAAAATGTATTAATGGAGTATGTAAAT
ATAGAAATAGGGATCTCTTAGATACATTTTGGTATTGTATTTTGAATTTT
TACTGAATATTAATATTGAAATTGTATAATTTGAAAAGTAACCTCATATA
ACCTCCAGCCAAAAATCTATGCAATTAGTACGCAAATGTAAATGGTTGAG
TGGCAAAAATGCCGCATGCGGATGGAGATTATTTATGAAGTACTTAACTG
GCTAACGAAAGATGCCTATTAAATGAATTTATCTTCCTTGATTTTTGAAA
AAAAAAAAAAAAAAAAAAA

RE06930.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-RA 2024 CG13005-RA 28..2024 1..1997 9985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16693721..16695405 313..1997 8425 100 Plus
chrX 22417052 chrX 16693331..16693643 1..313 1565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16804070..16805757 313..2000 8440 100 Plus
X 23542271 X 16803680..16803992 1..313 1565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16812168..16813855 313..2000 8440 100 Plus
X 23527363 X 16811778..16812090 1..313 1565 100 Plus
Blast to na_te.dros performed 2019-03-16 21:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 15..61 1836..1789 120 75 Minus

RE06930.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:31:12 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16693331..16693643 1..313 100 -> Plus
chrX 16693722..16695405 314..1997 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:13 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 81..1523 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:04 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 81..1523 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:08 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 81..1523 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:08 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 81..1523 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:23 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 81..1523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:08:52 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1523 1..1523 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:04 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1997 1..1997 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:08 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 8..2004 1..1997 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:08 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1523 1..1523 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:23 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 31..2027 1..1997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:12 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
X 16803680..16803992 1..313 100 -> Plus
X 16804071..16805754 314..1997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:12 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
X 16803680..16803992 1..313 100 -> Plus
X 16804071..16805754 314..1997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:12 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
X 16803680..16803992 1..313 100 -> Plus
X 16804071..16805754 314..1997 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:08 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16697713..16698025 1..313 100 -> Plus
arm_X 16698104..16699787 314..1997 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:06 Download gff for RE06930.complete
Subject Subject Range Query Range Percent Splice Strand
X 16811778..16812090 1..313 100 -> Plus
X 16812169..16813852 314..1997 100   Plus

RE06930.hyp Sequence

Translation from 2 to 1522

> RE06930.hyp
NNTKSDSVLFIDLFLCLFVTTKRGWPMKHLLEDPSVLAELQVLPDKTGGV
QDRQEAAKNPAENSVPDEDLPAAGGDLLRVKDTLGQLACSLHKLSKNDHI
VIDRKRHQVIRTDAATQQLTIYRCPDPAVMGIRPAIEKNAQNPPAKVGRP
SKRACSVATAPVAKKPTLAEQKPAPDTHRTRSGRQVRSLMPQPAPVTSGS
AVEPSSARMLEMLVADLRDKDYRAPMAAPKSTSVSSSVSISQEPTTTTTI
QRAVPKNAVCPGCGKIFLGRRLQRHFVKFPEHMPRPGEQTPPVAVATVPS
TVHPPSTPSLFGLLTAQLQRHSHLSEEQRSDLFLNELNDFVEQLQLRSQR
LIRNTSGLHFVNARIARVLGIPEGQYALDMSAMESPLAPMPESEGAALVA
GSGSEGARNLVVYAELSMSLDDPLTDEAAQRLNLSAGGQLHPPSEESLLR
NVSDLMQPPVATAPPTVNHGYDHASDNAVEALTMKETPNTEAILDLNVDF
FQFNPN*

RE06930.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-PA 480 CG13005-PA 1..480 27..506 2457 100 Plus

RE06930.pep Sequence

Translation from 80 to 1522

> RE06930.pep
MKHLLEDPSVLAELQVLPDKTGGVQDRQEAAKNPAENSVPDEDLPAAGGD
LLRVKDTLGQLACSLHKLSKNDHIVIDRKRHQVIRTDAATQQLTIYRCPD
PAVMGIRPAIEKNAQNPPAKVGRPSKRACSVATAPVAKKPTLAEQKPAPD
THRTRSGRQVRSLMPQPAPVTSGSAVEPSSARMLEMLVADLRDKDYRAPM
AAPKSTSVSSSVSISQEPTTTTTIQRAVPKNAVCPGCGKIFLGRRLQRHF
VKFPEHMPRPGEQTPPVAVATVPSTVHPPSTPSLFGLLTAQLQRHSHLSE
EQRSDLFLNELNDFVEQLQLRSQRLIRNTSGLHFVNARIARVLGIPEGQY
ALDMSAMESPLAPMPESEGAALVAGSGSEGARNLVVYAELSMSLDDPLTD
EAAQRLNLSAGGQLHPPSEESLLRNVSDLMQPPVATAPPTVNHGYDHASD
NAVEALTMKETPNTEAILDLNVDFFQFNPN*

RE06930.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21748-PA 464 GF21748-PA 1..464 1..480 1418 64.9 Plus
Dana\GF22698-PA 53 GF22698-PA 1..53 430..480 238 92.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19081-PA 480 GG19081-PA 1..480 1..480 2161 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11923-PA 599 GH11923-PA 393..598 280..478 791 78.3 Plus
Dgri\GH11923-PA 599 GH11923-PA 92..321 38..258 467 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-PA 480 CG13005-PA 1..480 1..480 2457 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15344-PA 599 GI15344-PA 396..599 280..480 720 77 Plus
Dmoj\GI15344-PA 599 GI15344-PA 109..314 56..258 465 46.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16514-PA 447 GL16514-PA 33..447 56..480 1447 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11971-PA 447 GA11971-PA 33..447 56..480 1443 69.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13470-PA 482 GM13470-PA 1..482 1..480 2215 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17310-PA 482 GD17310-PA 1..482 1..480 2239 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19316-PA 586 GJ19316-PA 119..586 43..480 1209 56.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25828-PA 463 GK25828-PA 34..463 56..480 1329 64.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17628-PA 481 GE17628-PA 1..481 1..480 2097 88.2 Plus