BDGP Sequence Production Resources |
Search the DGRC for RE06943
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 69 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6951-RA |
Protein status: | RE06943.pep: gold |
Sequenced Size: | 888 |
Gene | Date | Evidence |
---|---|---|
CG6951 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6951 | 2004-01-14 | Blastp of sequenced clone |
CG6951 | 2008-04-29 | Release 5.5 accounting |
CG6951 | 2008-08-15 | Release 5.9 accounting |
CG6951 | 2008-12-18 | 5.12 accounting |
888 bp (888 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011479
> RE06943.complete ATTGTTTGTTTTGCCGTCGTCCTCGCATTTCGTCTTTGTTAATTTCCTCA AAAAGTATACTGCGTCTTGTGTTCTTCGTGGCATAGAAATGGCTGAAGTT TCCGCTCAAGATTTGATATCCCAGTTGTCGAAGTCACCCGAAAGCCACAA GAGAAAGGAATATCTGCATTGGGATGACTACTTTATGGCCACCTCACTGC TCTCCGCCAAACGCAGCAAAGATCCCGTCACCCAAGTGGGCGCCTGCATC GTGGATTCCCAGAATCGGATAGTGGCCATTGGATACAATGGGTTCCCTCG CAACTGCAGCGATGACGTGTTTCCGTGGTCAAAAGCTAAGAAAGGCTCGC AGGAATTTGATCCCCTGGAAGACAAGAAGATGTACGTGGTCCACGCGGAG GCCAATGCAATCCTGAACAGCAACGGCATGAGTTTGTCTGGAACTCGACT GTATACCACACTATTTCCGTGCAACGAATGTGCCAAACTCATTATACAGG TGGGCATATCTCAGGTGCTATATTTGTCCGACAAATATGCCGATAAGCCC ACATATCGTGCATCCAAGCGGATGCTGGATGCAGTGGGCGTGGAATATAA GCGACACATCCCCCAGAAAAAAACGATCACCATTGATTTTGACACCTTCC CGGAAGAAGATCCGAATGCATCCCTGGGACTAAACGAACTCCATTTGTAA TGTACTAATACAATCTTAGCTATCTTGACAACTTTTAATGTGTTTAAAGT AAATTTGACGTGATCGGACTAAATATGTAGACAAATGATAAATAAATTTA ATAGCATGCTAATTAAGTTATACTTAGTTTGGCAGTACTAATATAAATAA AAAAATACAGTTTAACTAAAAAGCAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20233336..20233752 | 85..501 | 2070 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 20234108..20234485 | 497..874 | 1890 | 100 | Plus |
chr3L | 24539361 | chr3L | 20230770..20230855 | 1..86 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20237263..20237679 | 85..501 | 2085 | 100 | Plus |
3L | 28103327 | 3L | 20238035..20238416 | 497..878 | 1910 | 100 | Plus |
3L | 28103327 | 3L | 20234699..20234784 | 1..86 | 430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20230770..20230855 | 1..86 | 100 | -> | Plus |
chr3L | 20233338..20233750 | 87..499 | 99 | -> | Plus |
chr3L | 20234111..20234485 | 500..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 1..612 | 89..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 1..612 | 89..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RB | 1..612 | 89..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 1..612 | 89..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RB | 1..612 | 89..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 1..700 | 1..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 33..906 | 1..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 37..910 | 1..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 1..700 | 1..700 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6951-RA | 37..910 | 1..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20241599..20241684 | 1..86 | 100 | -> | Plus |
3L | 20244165..20244577 | 87..499 | 100 | -> | Plus |
3L | 20244938..20245312 | 500..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20241599..20241684 | 1..86 | 100 | -> | Plus |
3L | 20244165..20244577 | 87..499 | 100 | -> | Plus |
3L | 20244938..20245312 | 500..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20241599..20241684 | 1..86 | 100 | -> | Plus |
3L | 20244165..20244577 | 87..499 | 100 | -> | Plus |
3L | 20244938..20245312 | 500..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20234699..20234784 | 1..86 | 100 | -> | Plus |
arm_3L | 20237265..20237677 | 87..499 | 100 | -> | Plus |
arm_3L | 20238038..20238412 | 500..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20237265..20237677 | 87..499 | 100 | -> | Plus |
3L | 20238038..20238412 | 500..874 | 100 | Plus | |
3L | 20234699..20234784 | 1..86 | 100 | -> | Plus |
Translation from 0 to 699
> RE06943.hyp LFVLPSSSHFVFVNFLKKYTASCVLRGIEMAEVSAQDLISQLSKSPESHK RKEYLHWDDYFMATSLLSAKRSKDPVTQVGACIVDSQNRIVAIGYNGFPR NCSDDVFPWSKAKKGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRL YTTLFPCNECAKLIIQVGISQVLYLSDKYADKPTYRASKRMLDAVGVEYK RHIPQKKTITIDFDTFPEEDPNASLGLNELHL*
Translation from 88 to 699
> RE06943.pep MAEVSAQDLISQLSKSPESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQV GACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYV VHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKY ADKPTYRASKRMLDAVGVEYKRHIPQKKTITIDFDTFPEEDPNASLGLNE LHL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25318-PA | 187 | GF25318-PA | 2..187 | 18..203 | 856 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16092-PA | 199 | GG16092-PA | 2..194 | 6..197 | 916 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15113-PA | 194 | GH15113-PA | 25..193 | 20..192 | 699 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6951-PA | 203 | CG6951-PA | 1..203 | 1..203 | 1061 | 100 | Plus |
CG6951-PB | 203 | CG6951-PB | 1..203 | 1..203 | 1061 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13764-PA | 189 | GI13764-PA | 21..186 | 16..185 | 662 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25124-PA | 159 | GL25124-PA | 1..158 | 33..191 | 630 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19978-PA | 159 | GA19978-PA | 1..158 | 33..191 | 631 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22266-PA | 191 | GM22266-PA | 1..191 | 1..191 | 935 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14864-PA | 187 | GD14864-PA | 1..185 | 1..185 | 874 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13755-PA | 193 | GJ13755-PA | 12..191 | 6..190 | 692 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17242-PA | 203 | GK17242-PA | 39..201 | 18..185 | 657 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19654-PA | 199 | GE19654-PA | 2..199 | 6..203 | 993 | 90.9 | Plus |