Clone RE06996 Report

Search the DGRC for RE06996

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:69
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCG30411-RA
Protein status:RE06996.pep: gold
Sequenced Size:1247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30411 2001-12-14 Blastp of sequenced clone
CG5357 2002-01-01 Sim4 clustering to Release 2
CG30411 2003-01-01 Sim4 clustering to Release 3
CG30411 2008-04-29 Release 5.5 accounting
CG30411 2008-08-15 Release 5.9 accounting
CG30411 2008-12-18 5.12 accounting

Clone Sequence Records

RE06996.complete Sequence

1247 bp (1247 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070971

> RE06996.complete
GGTGTTTCACACGCCGACTGGAGGAGGAGGCGTAGGTGGTGGCCAGCCAG
CAGACAGCAGCGAATCATCATCAAACGAGTCCGAAAGGAGCGTGAGGAGC
AGTGAGGGCAGACACATGTCGCCATGTTGACAAGGGCGTGGGAGTGGGAA
TGGTTGCCAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGT
GGTGCTGCTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCT
CGGTCACCTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAA
GATGTTTACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTT
GCAGAAAGCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATC
TAGGCGCCGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAG
CAGTTTGTGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCC
GGAGCGAGCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGG
CTGTCTGACCCATTGTTGTAAATATCAATTAGTGTACGGAGCTTTCAGCT
GTGCAAGCCAAGGAAAGCACATAGGAAAATGGGTTGTATCTTTGAGATAC
AAAAAGCACATATATAAGCTTAAATTAGTATATATTTTAAGTAAACAAAT
TTCAAATATTTCACGCATAGAATAAATTCCTTTATGTTTATAGATAGCAC
TATTTGAAGTACAAACGAAACATCTGTAGCCCTGAACTTCCCACGCCCAC
CTCTATATTTATATTCAATGCTATCTGGAGTGAAATCGACATCTTCAGAT
TGTGTTTATTACCCAAGACACACGGTCGCTATAGTAATGATAGGTTTTTA
TCTGCCCCGTGGACTGAAAACTTTGTAACTGTGCACTGAACAACGTAATA
ACATTTAAAGTTAAAAGTTGCCAGGGGTTGTGAAGTTTGGATGTCGCTTA
AAGGCTGTCGGGTTTTTATAATCTTATGGAAATGTGTAGTAAGTTTGTAA
CTGTGTGAAAACCTGTAAGCTGCGGGCATTATTTGCCTTTTTTTTTGCCT
TTCAGTGCATTTCAGCCTTAATAAGTTCATTTTTCCATTGCAGCCAGATG
CACGAGCTTGAATTTATTTAATTAAAATGTAATAAGTCTAACAAGTCGGA
CATCATAATAAACTTTCGCTCAAAACAAAACAAAAAAAAAAAAAAAA

RE06996.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411.b 1847 CG30411.b 133..1361 4..1232 6145 100 Plus
CG30411-RA 1387 CG30411-RA 133..1361 4..1232 6145 100 Plus
CG30411.a 1476 CG30411.a 133..1167 4..1038 5175 100 Plus
CG30411.a 1476 CG30411.a 1168..1256 1144..1232 445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19302686..19303563 351..1231 4205 98.8 Plus
chr2R 21145070 chr2R 19302276..19302626 4..354 1755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416358..23417239 351..1232 4410 100 Plus
2R 25286936 2R 23415948..23416298 4..354 1755 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23417557..23418438 351..1232 4410 100 Plus
2R 25260384 2R 23417147..23417497 4..354 1755 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:31:12 has no hits.

RE06996.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:32:19 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19302273..19302626 1..354 99 -> Plus
chr2R 19302690..19303563 355..1231 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:16 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 124..549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:30 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 124..549 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:16 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 124..549 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:08 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 124..549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:33 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 124..549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:41 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..1231 3..1231 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:30 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..1231 3..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:16 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 7..1237 1..1231 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:08 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..1231 3..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:33 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 7..1237 1..1231 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:19 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23415945..23416298 1..354 99 -> Plus
2R 23416362..23417238 355..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:19 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23415945..23416298 1..354 99 -> Plus
2R 23416362..23417238 355..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:19 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23415945..23416298 1..354 99 -> Plus
2R 23416362..23417238 355..1231 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:16 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303468..19303821 1..354 99 -> Plus
arm_2R 19303885..19304761 355..1231 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:00 Download gff for RE06996.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23417162..23417515 1..354 99 -> Plus
2R 23417579..23418455 355..1231 100   Plus

RE06996.hyp Sequence

Translation from 123 to 548

> RE06996.hyp
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDL*

RE06996.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 141 CG30411-PA 1..141 1..141 747 100 Plus

RE06996.pep Sequence

Translation from 123 to 548

> RE06996.pep
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDL*

RE06996.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13054-PA 140 GF13054-PA 31..140 34..141 349 65.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22852-PA 133 GG22852-PA 1..133 1..141 493 78.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21225-PA 131 GH21225-PA 24..131 38..141 202 46 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 141 CG30411-PA 1..141 1..141 747 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20511-PA 141 GI20511-PA 19..140 39..141 185 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16911-PA 131 GL16911-PA 33..66 42..75 157 85.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15827-PA 139 GA15827-PA 33..139 42..141 332 61.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16010-PA 125 GM16010-PA 1..125 14..141 533 90.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11761-PA 138 GD11761-PA 1..138 1..141 591 89.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22362-PA 134 GJ22362-PA 32..134 40..141 185 43.5 Plus
Dvir\GJ22363-PA 134 GJ22363-PA 32..134 40..141 153 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23181-PA 132 GK23181-PA 34..132 43..141 236 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14288-PA 130 GE14288-PA 1..130 1..141 517 77.3 Plus