Clone RE07082 Report

Search the DGRC for RE07082

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:70
Well:82
Vector:pFlc-1
Associated Gene/TranscriptHexo2-RA
Protein status:RE07082.pep: gold
Sequenced Size:2150

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1787 2002-01-01 Sim4 clustering to Release 2
CG1787 2002-05-23 Blastp of sequenced clone
CG1787 2003-01-01 Sim4 clustering to Release 3
Hexo2 2008-04-29 Release 5.5 accounting
Hexo2 2008-08-15 Release 5.9 accounting
Hexo2 2008-12-18 5.12 accounting

Clone Sequence Records

RE07082.complete Sequence

2150 bp (2150 high quality bases) assembled on 2002-05-23

GenBank Submission: AY118361

> RE07082.complete
CGAGTGTTGTTGTGCTCGGCGAGCGGAGCGGGTGGGCGGCCGGTTGAAAA
TAGCGAATACACCGTACACACCCCCCTAACACAACAAATATAGCAAATAC
CGAACAGAAATTATAAAAGCGAGCGGCGCAGCCAAAGAAGCCGTTAGAAA
GAAACGATGCGGTTCAGCGGCTACAATCGTTATCAGTGCTTTTGCTCTGC
TGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCGGTCGGCGCTG
CGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGCCGGCAGCGCC
AGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCGCGGAGGGCGA
GATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAGAGCCAGCGGG
ATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCCCATGCCCACC
GGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCGATCCGTGGAA
GGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACCCAGTTTCTCA
GGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGAGTGCATACGA
AACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGATCCACGGTGGC
CAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGCTACGCCCTGG
TGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCAAGCGACGACG
GTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACCTGGTCACCGG
CAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAACATCACCGATC
GTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGCCCGTAACTTT
GTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGGCGGCCAGTAA
GCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGTTTTCCGCTGG
AGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTACTCCTCATCG
CAGACGTACTCGCGCCAGGATGCACTGAATCTTGTGAAATATGCCCGACT
GCGGGGCATACGGATACTGATCGAGATCGATGGACCCTCGCATGCGGGCA
ATGGCTGGCAATGGGGTCCTGCCGCCGGACTGGGCAACATGTCCGTGTGC
CTGAATCAATCGCCCTGGAGGAGATTCTGTGTACAGCCACCGTGCGGCCA
ACTGAATCCCCTGAACGATCATATGTACGCAGTGCTCAAGGAGATCTTCG
AGGACGTAGCCGAGGTGGGCGCTCCCGAGGAGACCCTGCACATGGGCGGC
GACGAGGTGTTCCTTCCCTGCTGGAATAACACCGACGAGATTCGGGATGG
GATGCGGGCACGTGGCTACGATCTCAGCGAGCAGAGCTTCCTGCGGCTGT
GGTCACAATTCCATCAGCGGAACCTCAATGCATGGGACGAGATTAACGAG
CGTATGTATCCGGGCATCAAGGAGCCGAAGTCGGTGATCATCTGGTCCAG
TCACCTCACCAATCCCCGGTACATCGAGACCTACCTGCCCAAGGAGCGGT
TCATAATCCAGACATGGGTGGAGTCACAGGATGCCCTCAATCGGGAGCTA
TTGCAGCGAGGCTACCGACTGATTGTGTCCACGAAGAATGCCTGGTACCT
GGATCACGGCTTCTGGGGCAGCACATCGTACTACAACTGGCGCACCGTGT
ACTCCAGTGGCATGCCCGTTGGTCGCAGCAAGGATCAGGTTCTCGGCGGT
GAGGTGTGCATGTGGAGCGAGTATGTGGATCAGAACTCACTGGAATCCCG
AATCTGGCCGCGAGCTGGAGCAGCAGCCGAGCGAATGTGGTCAAATCCAA
AGTCTTCAGCCCTGTTGGCCCAAAGAAGATTCTACCGCTACCGGGAGCGA
CTCCTGGCGCGCGGAATCCATGCGGATGCAGTTATTCCGCACTGGTGCGT
CCTCCACGAAGGACAGTGCCTCTAAATCGGTCGTTCCGAACCTAGTTTTA
GCACCAGCACATACCATGTACATACCTTTCAAACTATGTTATTTTATTCA
TCAGTTATTGCCCATAAAGATCTGTTTTTAATCCAAAAAAAAAAAAAAAA

RE07082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2167 Hexo2-RA 27..2160 3..2136 10655 99.9 Plus
Hexo2.a 2124 Hexo2.a 483..2117 502..2136 8160 99.9 Plus
Hexo2.a 2124 Hexo2.a 27..486 3..462 2300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8602309..8603849 303..1843 7660 99.8 Plus
chrX 22417052 chrX 8601402..8601705 3..306 1520 100 Plus
chrX 22417052 chrX 8603919..8604210 1843..2134 1460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8710572..8712112 303..1843 7690 99.9 Plus
X 23542271 X 8709655..8709958 3..306 1520 100 Plus
X 23542271 X 8712182..8712475 1843..2136 1470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8718670..8720210 303..1843 7690 99.9 Plus
X 23527363 X 8717753..8718056 3..306 1520 100 Plus
X 23527363 X 8720280..8720573 1843..2136 1470 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:57:33 has no hits.

RE07082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:17 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8603920..8604210 1844..2134 100   Plus
chrX 8601401..8601704 1..305 99 -> Plus
chrX 8602312..8603849 306..1843 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:19 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 157..2025 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:58 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 157..2025 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:17:09 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 157..2025 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:34:20 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 157..2025 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:25 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 157..2025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:03:32 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 2..2133 3..2134 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:58 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 2..2133 3..2134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:17:09 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 3..2135 1..2134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:34:20 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 2..2133 3..2134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:25 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 3..2135 1..2134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:17 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
X 8709654..8709957 1..305 99 -> Plus
X 8710575..8712112 306..1843 99 -> Plus
X 8712183..8712473 1844..2134 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:17 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
X 8709654..8709957 1..305 99 -> Plus
X 8710575..8712112 306..1843 99 -> Plus
X 8712183..8712473 1844..2134 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:17 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
X 8709654..8709957 1..305 99 -> Plus
X 8710575..8712112 306..1843 99 -> Plus
X 8712183..8712473 1844..2134 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:17:09 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8603687..8603990 1..305 99 -> Plus
arm_X 8604608..8606145 306..1843 99 -> Plus
arm_X 8606216..8606506 1844..2134 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:15:46 Download gff for RE07082.complete
Subject Subject Range Query Range Percent Splice Strand
X 8717752..8718055 1..305 99 -> Plus
X 8718673..8720210 306..1843 99 -> Plus
X 8720281..8720571 1844..2134 100   Plus

RE07082.pep Sequence

Translation from 156 to 2024

> RE07082.pep
MRFSGYNRYQCFCSAVGSLLLLSLLSFAVGAALTRADDVGSDADAGSASR
KWLCSRTDICTAEGEMVAGLQYAPEIFESQRDCRLSCGKYGAIWPMPTGK
ECTISHRRVRFDPWKVRFHVVAPGEAATQFLRETNRLFVSNLLKECIRNC
TLETSKQILVRSTVANESLVLDWPTDESYALVVRTTETATFVDIQATTVY
GARHAFETLSNLVTGSLSNGLLMVTTANITDRPAFSHRGVLLDTARNFVP
LKFIRSTLDAMAASKLNVLHWHVVDTHSFPLEITRVPEMQRYGAYSSSQT
YSRQDALNLVKYARLRGIRILIEIDGPSHAGNGWQWGPAAGLGNMSVCLN
QSPWRRFCVQPPCGQLNPLNDHMYAVLKEIFEDVAEVGAPEETLHMGGDE
VFLPCWNNTDEIRDGMRARGYDLSEQSFLRLWSQFHQRNLNAWDEINERM
YPGIKEPKSVIIWSSHLTNPRYIETYLPKERFIIQTWVESQDALNRELLQ
RGYRLIVSTKNAWYLDHGFWGSTSYYNWRTVYSSGMPVGRSKDQVLGGEV
CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLL
ARGIHADAVIPHWCVLHEGQCL*

RE07082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19129-PA 616 GF19129-PA 1..616 1..622 2964 87.5 Plus
Dana\GF25061-PA 620 GF25061-PA 56..595 83..621 984 37.6 Plus
Dana\GF12448-PA 663 GF12448-PA 218..663 175..622 888 38.8 Plus
Dana\GF12449-PA 715 GF12449-PA 92..617 83..586 772 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18269-PA 618 GG18269-PA 1..618 1..622 3266 97.3 Plus
Dere\GG15218-PA 622 GG15218-PA 58..597 83..621 989 38.1 Plus
Dere\GG22574-PA 660 GG22574-PA 88..660 83..622 868 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24516-PA 624 GH24516-PA 31..624 41..622 2465 74.1 Plus
Dgri\GH15943-PA 608 GH15943-PA 59..601 83..621 1036 39.1 Plus
Dgri\GH20571-PA 676 GH20571-PA 90..676 83..622 918 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-PA 622 CG1787-PA 1..622 1..622 3329 100 Plus
Hexo1-PF 606 CG1318-PF 6..597 14..621 972 35.7 Plus
Hexo1-PE 606 CG1318-PE 6..597 14..621 972 35.7 Plus
Hexo1-PD 606 CG1318-PD 6..597 14..621 972 35.7 Plus
Hexo1-PA 622 CG1318-PA 6..597 14..621 972 35.7 Plus
fdl-PF 660 CG8824-PF 195..660 154..622 871 37.5 Plus
fdl-PC 660 CG8824-PC 195..660 154..622 871 37.5 Plus
fdl-PE 672 CG8824-PE 207..672 154..622 871 37.5 Plus
fdl-PB 673 CG8824-PB 208..673 154..622 871 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15081-PA 614 GI15081-PA 6..614 13..622 2422 73.1 Plus
Dmoj\GI16594-PA 603 GI16594-PA 59..596 83..621 1051 39.5 Plus
Dmoj\GI19764-PA 664 GI19764-PA 90..664 83..622 912 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12954-PA 617 GL12954-PA 1..617 1..622 2698 79.7 Plus
Dper\GL13089-PA 558 GL13089-PA 2..548 75..621 2130 69.3 Plus
Dper\GL17874-PA 607 GL17874-PA 59..598 83..621 996 38.1 Plus
Dper\GL10214-PA 655 GL10214-PA 89..655 83..622 892 35.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14705-PA 617 GA14705-PA 1..617 1..622 2821 82.8 Plus
Dpse\GA26101-PA 605 GA26101-PA 26..596 51..621 2190 68.7 Plus
Dpse\GA12099-PA 607 GA12099-PA 59..598 83..621 1003 38.7 Plus
Dpse\GA21348-PA 655 GA21348-PA 89..655 83..622 892 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21777-PA 622 GM21777-PA 1..622 1..622 3329 98.7 Plus
Dsec\GM14649-PA 622 GM14649-PA 58..597 83..621 986 37.9 Plus
Dsec\GM20356-PA 673 GM20356-PA 101..673 83..622 881 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16914-PA 577 GD16914-PA 1..577 1..622 2998 91.5 Plus
Dsim\GD13835-PA 622 GD13835-PA 58..597 83..621 984 37.9 Plus
Dsim\GD25835-PA 673 GD25835-PA 101..673 83..622 886 34.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18889-PA 611 GJ18889-PA 36..611 51..622 2514 78.7 Plus
Dvir\GJ12846-PA 637 GJ12846-PA 59..598 83..621 1043 39.2 Plus
Dvir\GJ18228-PA 673 GJ18228-PA 215..673 162..622 908 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10305-PA 624 GK10305-PA 39..624 37..622 2628 79.4 Plus
Dwil\GK10559-PA 605 GK10559-PA 57..596 83..621 1038 37.2 Plus
Dwil\GK17832-PA 1229 GK17832-PA 656..1229 83..622 888 34.2 Plus
Dwil\GK17832-PA 1229 GK17832-PA 263..505 277..532 507 39 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15800-PA 627 GE15800-PA 26..627 21..622 3158 96.8 Plus
Dyak\GE21437-PA 622 GE21437-PA 58..597 83..621 988 38.2 Plus
Dyak\GE13443-PA 660 GE13443-PA 195..660 154..622 871 37.1 Plus

RE07082.hyp Sequence

Translation from 156 to 2024

> RE07082.hyp
MRFSGYNRYQCFCSAVGSLLLLSLLSFAVGAALTRADDVGSDADAGSASR
KWLCSRTDICTAEGEMVAGLQYAPEIFESQRDCRLSCGKYGAIWPMPTGK
ECTISHRRVRFDPWKVRFHVVAPGEAATQFLRETNRLFVSNLLKECIRNC
TLETSKQILVRSTVANESLVLDWPTDESYALVVRTTETATFVDIQATTVY
GARHAFETLSNLVTGSLSNGLLMVTTANITDRPAFSHRGVLLDTARNFVP
LKFIRSTLDAMAASKLNVLHWHVVDTHSFPLEITRVPEMQRYGAYSSSQT
YSRQDALNLVKYARLRGIRILIEIDGPSHAGNGWQWGPAAGLGNMSVCLN
QSPWRRFCVQPPCGQLNPLNDHMYAVLKEIFEDVAEVGAPEETLHMGGDE
VFLPCWNNTDEIRDGMRARGYDLSEQSFLRLWSQFHQRNLNAWDEINERM
YPGIKEPKSVIIWSSHLTNPRYIETYLPKERFIIQTWVESQDALNRELLQ
RGYRLIVSTKNAWYLDHGFWGSTSYYNWRTVYSSGMPVGRSKDQVLGGEV
CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLL
ARGIHADAVIPHWCVLHEGQCL*

RE07082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-PA 622 CG1787-PA 1..622 1..622 3329 100 Plus
Hexo1-PF 606 CG1318-PF 6..597 14..621 972 35.7 Plus
Hexo1-PE 606 CG1318-PE 6..597 14..621 972 35.7 Plus
Hexo1-PD 606 CG1318-PD 6..597 14..621 972 35.7 Plus
Hexo1-PA 622 CG1318-PA 6..597 14..621 972 35.7 Plus