Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE07178.complete Sequence
1271 bp (1271 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113392
> RE07178.complete
ATGGTCTTTTTTCTTTAAACGCGTGATAACCACACAAATGGGAATGCATA
ATATATGTTTCAAAAAATCTCCCCTCAATTTATTAAACAAAACAAATAAA
AATTCTGCACTGATTGGCTGAACGGCTTACAGTGAAACAGACACGTTCGA
ATCACACGAAAATTAATTTTCGATCAAGGCACAGACGCGGATATTAATCA
GCCTTCCGTGGCGTATTCTGCTCGGATTATTTGACGTGGGATTGCATTTG
CCTAAGAAAGCACTGTAAACCAAGAGATCGCTAATAATGCGAAATAAATT
TCAATCCGCTATTAGGGGCGTAACGCGACAATACATTATAAGATCGTGGC
CCCGAGGCAGAGAGCTATTGAGGACGCAACTGATTATCCCGCCATCTTCT
ACATCTAGCCCATTTACCTGTAGAAACTACTCAAAGTTTAGCACACATTT
GTCTATGGAGCGGGCGTTGGAGTTGCTATGCAACCTTGATGACGAGGAAC
GCGGCAACCTGCGCTCCGCTCTTGGCAGGCTAGATGCCGACAAGGAAAAA
AAATTATACGAGAGTCAACTGGCTTTCGGTAGTTGGCGCACTCGCTTCGG
ACGACTTTCTAATAAGACGGAATTGGGCCAAGTTATTGCGGGAACTTTTT
GCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGTTGAGACGGCAGCA
TCCCCCACGGCAGGTCAATTGTACAGCATTTTCTTTGTAAATGCAGTGCC
GTTTATCGCTTTCGGATTCCTTGACAATTTCATAATGATCATGGCGGGTG
AATACATTGAATATTATTTGGGCCACTTTATAACGCTGTCTACAATGGCA
GCCGCAGGACTAGGAAACACCATAAGCGATATTTTAGGCATCACTATGGC
CACCTACGTTGAGAATGGGTGCCAGATATTGGGTCTAAAGCAGCCCAATT
TGACTCCAGCGCAATTTGAATTAAAGTCTAGCAAGCGGTCTTCAAGTTAC
GGACGGATTGTCGGGATCACTGTAGGCTGTTTGCTTGGAATGTGTCCTTT
ATGGTTTATGGATGAAAAAGCAGATAAGGTGAATGTAAAAGATGAAATCC
CGAAAAATTAGAAAATGTTTTCCAGCTTGTCAAGAGAACGGATATCGGAA
ATAATTTAACATTTTCTTTTCATGTTTTAAAGGGATAAATTTTTTGTATT
ATTTATGAATTTTTCGTTCAACAATTTGAATATGTATCAAATGTTTGTTA
GGCAACAAAGAAAAAAAAAAA
RE07178.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-RD | 1741 | CG17715-RD | 320..1392 | 184..1256 | 5365 | 100 | Plus |
CG17715.r | 4266 | CG17715.r | 871..1441 | 686..1256 | 2855 | 100 | Plus |
CG17715-RE | 1790 | CG17715-RE | 871..1441 | 686..1256 | 2855 | 100 | Plus |
CG17715.r | 4266 | CG17715.r | 248..750 | 184..686 | 2515 | 100 | Plus |
CG17715-RE | 1790 | CG17715-RE | 248..750 | 184..686 | 2515 | 100 | Plus |
CG17715.r | 4266 | CG17715.r | 9..189 | 4..184 | 905 | 100 | Plus |
CG17715-RE | 1790 | CG17715-RE | 9..189 | 4..184 | 905 | 100 | Plus |
CG17715-RD | 1741 | CG17715-RD | 81..261 | 4..184 | 905 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 22735693..22736074 | 184..565 | 1910 | 100 | Plus |
chr2L | 23010047 | chr2L | 22740914..22741173 | 997..1256 | 1285 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 22740653..22740858 | 796..1001 | 1015 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 22735454..22735634 | 4..184 | 905 | 100 | Plus |
chr2L | 23010047 | chr2L | 22740195..22740317 | 564..686 | 615 | 100 | Plus |
chr2L | 23010047 | chr2L | 22740531..22740599 | 729..797 | 345 | 100 | Plus |
chr2L | 23010047 | chr2L | 22740438..22740480 | 686..728 | 215 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 808242..808623 | 565..184 | 1910 | 100 | Minus |
2L | 23513712 | 2L | 22844468..22844849 | 184..565 | 1910 | 100 | Plus |
2R | 25286936 | 2R | 803143..803402 | 1256..997 | 1285 | 99.6 | Minus |
2L | 23513712 | 2L | 22849689..22849948 | 997..1256 | 1285 | 99.6 | Plus |
2R | 25286936 | 2R | 803458..803663 | 1001..796 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 22849428..22849633 | 796..1001 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 808682..808862 | 184..4 | 905 | 100 | Minus |
2L | 23513712 | 2L | 22844229..22844409 | 4..184 | 905 | 100 | Plus |
2R | 25286936 | 2R | 803999..804121 | 686..564 | 615 | 100 | Minus |
2L | 23513712 | 2L | 22848970..22849092 | 564..686 | 615 | 100 | Plus |
2R | 25286936 | 2R | 803717..803785 | 797..729 | 345 | 100 | Minus |
2L | 23513712 | 2L | 22849306..22849374 | 729..797 | 345 | 100 | Plus |
2R | 25286936 | 2R | 803836..803878 | 728..686 | 215 | 100 | Minus |
2L | 23513712 | 2L | 22849213..22849255 | 686..728 | 215 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22844468..22844849 | 184..565 | 1910 | 100 | Plus |
2R | 25260384 | 2R | 808242..808623 | 565..184 | 1910 | 100 | Minus |
2L | 23513712 | 2L | 22849689..22849948 | 997..1256 | 1285 | 99.6 | Plus |
2R | 25260384 | 2R | 803143..803402 | 1256..997 | 1285 | 99.6 | Minus |
2L | 23513712 | 2L | 22849428..22849633 | 796..1001 | 1030 | 100 | Plus |
2R | 25260384 | 2R | 803458..803663 | 1001..796 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 22844229..22844409 | 4..184 | 905 | 100 | Plus |
2R | 25260384 | 2R | 808682..808862 | 184..4 | 905 | 100 | Minus |
2L | 23513712 | 2L | 22848970..22849092 | 564..686 | 615 | 100 | Plus |
2R | 25260384 | 2R | 803999..804121 | 686..564 | 615 | 100 | Minus |
2L | 23513712 | 2L | 22849306..22849374 | 729..797 | 345 | 100 | Plus |
2R | 25260384 | 2R | 803717..803785 | 797..729 | 345 | 100 | Minus |
2L | 23513712 | 2L | 22849213..22849255 | 686..728 | 215 | 100 | Plus |
2R | 25260384 | 2R | 803836..803878 | 728..686 | 215 | 100 | Minus |
2L | 23513712 | 2L | 22845166..22845205 | 93..132 | 170 | 95 | Plus |
2R | 25260384 | 2R | 807886..807925 | 132..93 | 170 | 95 | Minus |
Blast to na_te.dros performed 2019-03-16 04:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Juan | 4236 | Juan JUAN 4236bp | 1694..1818 | 1213..1090 | 120 | 60 | Minus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 685..760 | 31..106 | 119 | 61.8 | Plus |
RE07178.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:32:10 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 22740195..22740317 | 564..686 | 100 | -> | Plus |
chr2L | 22740439..22740480 | 687..728 | 100 | -> | Plus |
chr2L | 22740531..22740598 | 729..796 | 100 | -> | Plus |
chr2L | 22740654..22740857 | 797..1000 | 99 | -> | Plus |
chr2L | 22740918..22741176 | 1001..1260 | 98 | | Plus |
chr2L | 22735451..22735633 | 1..183 | 99 | -> | Plus |
chr2L | 22735693..22736072 | 184..563 | 100 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:20 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..825 | 287..1111 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:21 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..825 | 287..1111 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:36 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RD | 1..825 | 287..1111 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:39 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..825 | 287..1111 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:42:25 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RD | 1..825 | 287..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:49 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..1259 | 1..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:21 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..1259 | 1..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:36 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 7..1265 | 1..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:39 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 1..1259 | 1..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:42:25 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17715-RB | 7..1265 | 1..1260 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 803999..804121 | 564..686 | 100 | <- | Minus |
2R | 803137..803398 | 1001..1260 | 98 | <- | Minus |
2R | 803459..803662 | 797..1000 | 100 | <- | Minus |
2R | 803718..803785 | 729..796 | 100 | <- | Minus |
2R | 803836..803877 | 687..728 | 100 | <- | Minus |
2R | 808244..808623 | 184..563 | 100 | <- | Minus |
2R | 808683..808865 | 1..183 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 803999..804121 | 564..686 | 100 | <- | Minus |
2R | 803137..803398 | 1001..1260 | 98 | <- | Minus |
2R | 803459..803662 | 797..1000 | 100 | <- | Minus |
2R | 803718..803785 | 729..796 | 100 | <- | Minus |
2R | 803836..803877 | 687..728 | 100 | <- | Minus |
2R | 808244..808623 | 184..563 | 100 | <- | Minus |
2R | 808683..808865 | 1..183 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 803999..804121 | 564..686 | 100 | <- | Minus |
2R | 803137..803398 | 1001..1260 | 98 | <- | Minus |
2R | 803459..803662 | 797..1000 | 100 | <- | Minus |
2R | 803718..803785 | 729..796 | 100 | <- | Minus |
2R | 803836..803877 | 687..728 | 100 | <- | Minus |
2R | 808244..808623 | 184..563 | 100 | <- | Minus |
2R | 808683..808865 | 1..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:36 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22736958..22737140 | 1..183 | 99 | -> | Plus |
arm_2L | 22737200..22737579 | 184..563 | 100 | -> | Plus |
arm_2L | 22741702..22741824 | 564..686 | 100 | -> | Plus |
arm_2L | 22741946..22741987 | 687..728 | 100 | -> | Plus |
arm_2L | 22742038..22742105 | 729..796 | 100 | -> | Plus |
arm_2L | 22742161..22742364 | 797..1000 | 100 | -> | Plus |
arm_2L | 22742425..22742683 | 1001..1260 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:32 Download gff for
RE07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 808244..808623 | 184..563 | 100 | <- | Minus |
2R | 808683..808865 | 1..183 | 99 | | Minus |
2R | 803137..803398 | 1001..1260 | 98 | <- | Minus |
2R | 803459..803662 | 797..1000 | 100 | <- | Minus |
2R | 803718..803785 | 729..796 | 100 | <- | Minus |
2R | 803836..803877 | 687..728 | 100 | <- | Minus |
2R | 803999..804121 | 564..686 | 100 | <- | Minus |
RE07178.pep Sequence
Translation from 286 to 1110
> RE07178.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*
RE07178.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24043-PA | 276 | GF24043-PA | 37..262 | 40..263 | 937 | 77.9 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH10759-PA | 1696 | GH10759-PA | 1515..1696 | 46..269 | 714 | 63.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-PB | 274 | CG17715-PB | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PD | 274 | CG17715-PD | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PG | 269 | CG17715-PG | 1..267 | 1..267 | 1373 | 98.9 | Plus |
CG17715-PH | 268 | CG17715-PH | 1..268 | 1..274 | 1372 | 97.4 | Plus |
CG17715-PC | 233 | CG17715-PC | 1..233 | 1..274 | 1150 | 84.7 | Plus |
CG17715-PF | 233 | CG17715-PF | 1..233 | 1..274 | 1150 | 84.7 | Plus |
CG17715-PE | 135 | CG17715-PE | 1..133 | 1..133 | 693 | 100 | Plus |
CG17715-PA | 135 | CG17715-PA | 1..133 | 1..133 | 693 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11672-PA | 207 | GI11672-PA | 1..201 | 61..262 | 862 | 79.3 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL25632-PA | 151 | GL25632-PA | 1..131 | 133..263 | 620 | 86.3 | Plus |
Dper\GL25631-PA | 119 | GL25631-PA | 51..102 | 43..94 | 214 | 76.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA25361-PA | 222 | GA25361-PA | 32..202 | 94..263 | 789 | 84.8 | Plus |
Dpse\GA25360-PA | 119 | GA25360-PA | 51..102 | 43..94 | 214 | 76.9 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13036-PA | 152 | GJ13036-PA | 19..145 | 135..261 | 574 | 82.7 | Plus |
Dvir\GJ13025-PA | 121 | GJ13025-PA | 62..110 | 46..94 | 164 | 65.3 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK14771-PA | 87 | GK14771-PA | 1..84 | 187..270 | 367 | 83.3 | Plus |
Dwil\GK14770-PA | 92 | GK14770-PA | 47..88 | 51..92 | 161 | 69 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22675-PA | 214 | GE22675-PA | 111..213 | 171..273 | 542 | 97.1 | Plus |
RE07178.hyp Sequence
Translation from 286 to 1110
> RE07178.hyp
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*
RE07178.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17715-PB | 274 | CG17715-PB | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PD | 274 | CG17715-PD | 1..274 | 1..274 | 1422 | 100 | Plus |
CG17715-PG | 269 | CG17715-PG | 1..267 | 1..267 | 1373 | 98.9 | Plus |
CG17715-PH | 268 | CG17715-PH | 1..268 | 1..274 | 1372 | 97.4 | Plus |
CG17715-PC | 233 | CG17715-PC | 1..233 | 1..274 | 1150 | 84.7 | Plus |