Clone RE07178 Report

Search the DGRC for RE07178

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:71
Well:78
Vector:pFlc-1
Associated Gene/TranscriptCG17715-RB
Protein status:RE07178.pep: gold
Preliminary Size:760
Sequenced Size:1271

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17715 2002-01-01 Sim4 clustering to Release 2
CG17715 2002-04-26 Blastp of sequenced clone
CG17715 2003-01-01 Sim4 clustering to Release 3
CG17715 2008-04-29 Release 5.5 accounting
CG17715 2008-08-15 Release 5.9 accounting
CG17715 2008-12-18 5.12 accounting

Clone Sequence Records

RE07178.complete Sequence

1271 bp (1271 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113392

> RE07178.complete
ATGGTCTTTTTTCTTTAAACGCGTGATAACCACACAAATGGGAATGCATA
ATATATGTTTCAAAAAATCTCCCCTCAATTTATTAAACAAAACAAATAAA
AATTCTGCACTGATTGGCTGAACGGCTTACAGTGAAACAGACACGTTCGA
ATCACACGAAAATTAATTTTCGATCAAGGCACAGACGCGGATATTAATCA
GCCTTCCGTGGCGTATTCTGCTCGGATTATTTGACGTGGGATTGCATTTG
CCTAAGAAAGCACTGTAAACCAAGAGATCGCTAATAATGCGAAATAAATT
TCAATCCGCTATTAGGGGCGTAACGCGACAATACATTATAAGATCGTGGC
CCCGAGGCAGAGAGCTATTGAGGACGCAACTGATTATCCCGCCATCTTCT
ACATCTAGCCCATTTACCTGTAGAAACTACTCAAAGTTTAGCACACATTT
GTCTATGGAGCGGGCGTTGGAGTTGCTATGCAACCTTGATGACGAGGAAC
GCGGCAACCTGCGCTCCGCTCTTGGCAGGCTAGATGCCGACAAGGAAAAA
AAATTATACGAGAGTCAACTGGCTTTCGGTAGTTGGCGCACTCGCTTCGG
ACGACTTTCTAATAAGACGGAATTGGGCCAAGTTATTGCGGGAACTTTTT
GCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGTTGAGACGGCAGCA
TCCCCCACGGCAGGTCAATTGTACAGCATTTTCTTTGTAAATGCAGTGCC
GTTTATCGCTTTCGGATTCCTTGACAATTTCATAATGATCATGGCGGGTG
AATACATTGAATATTATTTGGGCCACTTTATAACGCTGTCTACAATGGCA
GCCGCAGGACTAGGAAACACCATAAGCGATATTTTAGGCATCACTATGGC
CACCTACGTTGAGAATGGGTGCCAGATATTGGGTCTAAAGCAGCCCAATT
TGACTCCAGCGCAATTTGAATTAAAGTCTAGCAAGCGGTCTTCAAGTTAC
GGACGGATTGTCGGGATCACTGTAGGCTGTTTGCTTGGAATGTGTCCTTT
ATGGTTTATGGATGAAAAAGCAGATAAGGTGAATGTAAAAGATGAAATCC
CGAAAAATTAGAAAATGTTTTCCAGCTTGTCAAGAGAACGGATATCGGAA
ATAATTTAACATTTTCTTTTCATGTTTTAAAGGGATAAATTTTTTGTATT
ATTTATGAATTTTTCGTTCAACAATTTGAATATGTATCAAATGTTTGTTA
GGCAACAAAGAAAAAAAAAAA

RE07178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RD 1741 CG17715-RD 320..1392 184..1256 5365 100 Plus
CG17715.r 4266 CG17715.r 871..1441 686..1256 2855 100 Plus
CG17715-RE 1790 CG17715-RE 871..1441 686..1256 2855 100 Plus
CG17715.r 4266 CG17715.r 248..750 184..686 2515 100 Plus
CG17715-RE 1790 CG17715-RE 248..750 184..686 2515 100 Plus
CG17715.r 4266 CG17715.r 9..189 4..184 905 100 Plus
CG17715-RE 1790 CG17715-RE 9..189 4..184 905 100 Plus
CG17715-RD 1741 CG17715-RD 81..261 4..184 905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22735693..22736074 184..565 1910 100 Plus
chr2L 23010047 chr2L 22740914..22741173 997..1256 1285 99.6 Plus
chr2L 23010047 chr2L 22740653..22740858 796..1001 1015 99.5 Plus
chr2L 23010047 chr2L 22735454..22735634 4..184 905 100 Plus
chr2L 23010047 chr2L 22740195..22740317 564..686 615 100 Plus
chr2L 23010047 chr2L 22740531..22740599 729..797 345 100 Plus
chr2L 23010047 chr2L 22740438..22740480 686..728 215 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:29:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 808242..808623 565..184 1910 100 Minus
2L 23513712 2L 22844468..22844849 184..565 1910 100 Plus
2R 25286936 2R 803143..803402 1256..997 1285 99.6 Minus
2L 23513712 2L 22849689..22849948 997..1256 1285 99.6 Plus
2R 25286936 2R 803458..803663 1001..796 1030 100 Minus
2L 23513712 2L 22849428..22849633 796..1001 1030 100 Plus
2R 25286936 2R 808682..808862 184..4 905 100 Minus
2L 23513712 2L 22844229..22844409 4..184 905 100 Plus
2R 25286936 2R 803999..804121 686..564 615 100 Minus
2L 23513712 2L 22848970..22849092 564..686 615 100 Plus
2R 25286936 2R 803717..803785 797..729 345 100 Minus
2L 23513712 2L 22849306..22849374 729..797 345 100 Plus
2R 25286936 2R 803836..803878 728..686 215 100 Minus
2L 23513712 2L 22849213..22849255 686..728 215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22844468..22844849 184..565 1910 100 Plus
2R 25260384 2R 808242..808623 565..184 1910 100 Minus
2L 23513712 2L 22849689..22849948 997..1256 1285 99.6 Plus
2R 25260384 2R 803143..803402 1256..997 1285 99.6 Minus
2L 23513712 2L 22849428..22849633 796..1001 1030 100 Plus
2R 25260384 2R 803458..803663 1001..796 1030 100 Minus
2L 23513712 2L 22844229..22844409 4..184 905 100 Plus
2R 25260384 2R 808682..808862 184..4 905 100 Minus
2L 23513712 2L 22848970..22849092 564..686 615 100 Plus
2R 25260384 2R 803999..804121 686..564 615 100 Minus
2L 23513712 2L 22849306..22849374 729..797 345 100 Plus
2R 25260384 2R 803717..803785 797..729 345 100 Minus
2L 23513712 2L 22849213..22849255 686..728 215 100 Plus
2R 25260384 2R 803836..803878 728..686 215 100 Minus
2L 23513712 2L 22845166..22845205 93..132 170 95 Plus
2R 25260384 2R 807886..807925 132..93 170 95 Minus
Blast to na_te.dros performed 2019-03-16 04:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 1694..1818 1213..1090 120 60 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 685..760 31..106 119 61.8 Plus

RE07178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:32:10 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22740195..22740317 564..686 100 -> Plus
chr2L 22740439..22740480 687..728 100 -> Plus
chr2L 22740531..22740598 729..796 100 -> Plus
chr2L 22740654..22740857 797..1000 99 -> Plus
chr2L 22740918..22741176 1001..1260 98   Plus
chr2L 22735451..22735633 1..183 99 -> Plus
chr2L 22735693..22736072 184..563 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:20 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 287..1111 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:21 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 287..1111 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:36 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 1..825 287..1111 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:39 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..825 287..1111 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:42:25 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 1..825 287..1111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:49 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..1259 1..1260 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:21 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..1259 1..1260 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:36 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 7..1265 1..1260 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:39 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 1..1259 1..1260 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:42:25 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RB 7..1265 1..1260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 803999..804121 564..686 100 <- Minus
2R 803137..803398 1001..1260 98 <- Minus
2R 803459..803662 797..1000 100 <- Minus
2R 803718..803785 729..796 100 <- Minus
2R 803836..803877 687..728 100 <- Minus
2R 808244..808623 184..563 100 <- Minus
2R 808683..808865 1..183 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 803999..804121 564..686 100 <- Minus
2R 803137..803398 1001..1260 98 <- Minus
2R 803459..803662 797..1000 100 <- Minus
2R 803718..803785 729..796 100 <- Minus
2R 803836..803877 687..728 100 <- Minus
2R 808244..808623 184..563 100 <- Minus
2R 808683..808865 1..183 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:10 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 803999..804121 564..686 100 <- Minus
2R 803137..803398 1001..1260 98 <- Minus
2R 803459..803662 797..1000 100 <- Minus
2R 803718..803785 729..796 100 <- Minus
2R 803836..803877 687..728 100 <- Minus
2R 808244..808623 184..563 100 <- Minus
2R 808683..808865 1..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:36 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22736958..22737140 1..183 99 -> Plus
arm_2L 22737200..22737579 184..563 100 -> Plus
arm_2L 22741702..22741824 564..686 100 -> Plus
arm_2L 22741946..22741987 687..728 100 -> Plus
arm_2L 22742038..22742105 729..796 100 -> Plus
arm_2L 22742161..22742364 797..1000 100 -> Plus
arm_2L 22742425..22742683 1001..1260 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:32 Download gff for RE07178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 808244..808623 184..563 100 <- Minus
2R 808683..808865 1..183 99   Minus
2R 803137..803398 1001..1260 98 <- Minus
2R 803459..803662 797..1000 100 <- Minus
2R 803718..803785 729..796 100 <- Minus
2R 803836..803877 687..728 100 <- Minus
2R 803999..804121 564..686 100 <- Minus

RE07178.pep Sequence

Translation from 286 to 1110

> RE07178.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*

RE07178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24043-PA 276 GF24043-PA 37..262 40..263 937 77.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10759-PA 1696 GH10759-PA 1515..1696 46..269 714 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PB 274 CG17715-PB 1..274 1..274 1422 100 Plus
CG17715-PD 274 CG17715-PD 1..274 1..274 1422 100 Plus
CG17715-PG 269 CG17715-PG 1..267 1..267 1373 98.9 Plus
CG17715-PH 268 CG17715-PH 1..268 1..274 1372 97.4 Plus
CG17715-PC 233 CG17715-PC 1..233 1..274 1150 84.7 Plus
CG17715-PF 233 CG17715-PF 1..233 1..274 1150 84.7 Plus
CG17715-PE 135 CG17715-PE 1..133 1..133 693 100 Plus
CG17715-PA 135 CG17715-PA 1..133 1..133 693 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11672-PA 207 GI11672-PA 1..201 61..262 862 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25632-PA 151 GL25632-PA 1..131 133..263 620 86.3 Plus
Dper\GL25631-PA 119 GL25631-PA 51..102 43..94 214 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25361-PA 222 GA25361-PA 32..202 94..263 789 84.8 Plus
Dpse\GA25360-PA 119 GA25360-PA 51..102 43..94 214 76.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13036-PA 152 GJ13036-PA 19..145 135..261 574 82.7 Plus
Dvir\GJ13025-PA 121 GJ13025-PA 62..110 46..94 164 65.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14771-PA 87 GK14771-PA 1..84 187..270 367 83.3 Plus
Dwil\GK14770-PA 92 GK14770-PA 47..88 51..92 161 69 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22675-PA 214 GE22675-PA 111..213 171..273 542 97.1 Plus

RE07178.hyp Sequence

Translation from 286 to 1110

> RE07178.hyp
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*

RE07178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PB 274 CG17715-PB 1..274 1..274 1422 100 Plus
CG17715-PD 274 CG17715-PD 1..274 1..274 1422 100 Plus
CG17715-PG 269 CG17715-PG 1..267 1..267 1373 98.9 Plus
CG17715-PH 268 CG17715-PH 1..268 1..274 1372 97.4 Plus
CG17715-PC 233 CG17715-PC 1..233 1..274 1150 84.7 Plus