![]() | BDGP Sequence Production Resources |
Search the DGRC for RE07220
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 72 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mlc1-RB |
Protein status: | RE07220.pep: gold |
Sequenced Size: | 851 |
Gene | Date | Evidence |
---|---|---|
CG5596 | 2001-12-14 | Blastp of sequenced clone |
CG5596 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5596 | 2003-01-01 | Sim4 clustering to Release 3 |
Mlc1 | 2008-04-29 | Release 5.5 accounting |
Mlc1 | 2008-08-15 | Release 5.9 accounting |
Mlc1 | 2008-12-18 | 5.12 accounting |
851 bp (851 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070972
> RE07220.complete GCCGTACTGCCACTGACGAATAACGTTCAGTCGAGACCGAGCTCATCCGC GATACAGTTGATTTTCGCATCAAACAGACAAAATGGCTGATGTTCCAAAG CGTGAAGTTGAAAATGTCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGG TGAGGGCATTGATGCCGTCGACCTAGGTGATGCCCTCCGCGCTCTGAACT TGAACCCCACATTGGCGCTGATCGAGAAATTGGGCGGCACCAAGAAGCGC AACGAGAAGAAGATCAAGCTGGATGAGTTCCTGCCCATCTACTCACAGGT CAAGAAGGAGAAGGAGCAGGGCTGCTACGAGGACTTCATTGAGTGCTTGA AGCTCTACGACAAGGAGGAGAACGGCACCATGCTGCTGGCTGAGCTGCAG CACGCCCTGCTGGCGCTTGGTGAGAGCTTGGATGACGAGCAGGTGGAGAC CCTGTTCGCTGACTGCATGGATCCCGAGGATGATGAAGGATTTATCCCCT ACTCTCAGTTCGTCCAGCGCCTGATGAGCGATCCTGTCGTCTTCGACTAA ACACATTCCTAGCCAGAATGTGTGACAGACCAGATCAGCTAAAATAGTTG AAAACAACAGCTTCAACAACAACCAACAAACAACAACAACAACAACAACA ACACCAACAAACTTTTAGCGACAACCATTCTCCATAGATGTTATATTCAT CGCTAACTCTCTCTATCTCTCTCGTATATTATTTTAATTAAAAATTACTT CTGCTACTACAACTGCAAAATTGAACTTCAAGATAATATTATTTTTTAAA AAATAAAAAAATTTAAATTATAAAATAACGAAAACAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23481516..23481826 | 424..114 | 1540 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 23480584..23480865 | 835..554 | 1395 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 23481374..23481461 | 506..419 | 440 | 100 | Minus |
chr3R | 27901430 | chr3R | 23483020..23483105 | 86..1 | 430 | 100 | Minus |
chr3R | 27901430 | chr3R | 23480977..23481023 | 553..507 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27658611..27658921 | 424..114 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 27657667..27657955 | 842..554 | 1430 | 99.7 | Minus |
3R | 32079331 | 3R | 27658469..27658556 | 506..419 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27660109..27660194 | 86..1 | 430 | 100 | Minus |
3R | 32079331 | 3R | 27658067..27658113 | 553..507 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 27399442..27399752 | 424..114 | 1540 | 99.6 | Minus |
3R | 31820162 | 3R | 27398498..27398786 | 842..554 | 1430 | 99.6 | Minus |
3R | 31820162 | 3R | 27399300..27399387 | 506..419 | 440 | 100 | Minus |
3R | 31820162 | 3R | 27400940..27401025 | 86..1 | 430 | 100 | Minus |
3R | 31820162 | 3R | 27398898..27398944 | 553..507 | 235 | 100 | Minus |
3R | 31820162 | 3R | 27400760..27400788 | 113..85 | 145 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blood | 7410 | blood BLOOD 7410bp | 6887..6957 | 826..755 | 132 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23480817..23480865 | 554..602 | 97 | <- | Minus |
chr3R | 23480977..23481023 | 507..553 | 100 | <- | Minus |
chr3R | 23481374..23481460 | 420..506 | 100 | <- | Minus |
chr3R | 23481521..23481826 | 114..419 | 99 | <- | Minus |
chr3R | 23482840..23482867 | 86..113 | 100 | <- | Minus |
chr3R | 23483021..23483105 | 1..85 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..468 | 83..550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..468 | 83..550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..468 | 83..550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..468 | 83..550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..468 | 83..550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 6..840 | 1..835 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 6..840 | 1..835 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..818 | 18..835 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 6..840 | 1..835 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mlc1-RB | 1..818 | 18..835 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27657674..27657955 | 554..835 | 99 | <- | Minus |
3R | 27658067..27658113 | 507..553 | 100 | <- | Minus |
3R | 27658469..27658555 | 420..506 | 100 | <- | Minus |
3R | 27658616..27658921 | 114..419 | 99 | <- | Minus |
3R | 27659929..27659956 | 86..113 | 100 | <- | Minus |
3R | 27660110..27660194 | 1..85 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27657674..27657955 | 554..835 | 99 | <- | Minus |
3R | 27658067..27658113 | 507..553 | 100 | <- | Minus |
3R | 27658469..27658555 | 420..506 | 100 | <- | Minus |
3R | 27658616..27658921 | 114..419 | 99 | <- | Minus |
3R | 27659929..27659956 | 86..113 | 100 | <- | Minus |
3R | 27660110..27660194 | 1..85 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27657674..27657955 | 554..835 | 99 | <- | Minus |
3R | 27658067..27658113 | 507..553 | 100 | <- | Minus |
3R | 27658469..27658555 | 420..506 | 100 | <- | Minus |
3R | 27658616..27658921 | 114..419 | 99 | <- | Minus |
3R | 27659929..27659956 | 86..113 | 100 | <- | Minus |
3R | 27660110..27660194 | 1..85 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23483396..23483677 | 554..835 | 99 | <- | Minus |
arm_3R | 23483789..23483835 | 507..553 | 100 | <- | Minus |
arm_3R | 23484191..23484277 | 420..506 | 100 | <- | Minus |
arm_3R | 23484338..23484643 | 114..419 | 99 | <- | Minus |
arm_3R | 23485651..23485678 | 86..113 | 100 | <- | Minus |
arm_3R | 23485832..23485916 | 1..85 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27398505..27398786 | 554..835 | 99 | <- | Minus |
3R | 27398898..27398944 | 507..553 | 100 | <- | Minus |
3R | 27399300..27399386 | 420..506 | 100 | <- | Minus |
3R | 27399447..27399752 | 114..419 | 99 | <- | Minus |
3R | 27400760..27400787 | 86..113 | 100 | <- | Minus |
3R | 27400941..27401025 | 1..85 | 100 | Minus |
Translation from 82 to 549
> RE07220.pep MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD PVVFD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18698-PA | 155 | GF18698-PA | 1..155 | 1..155 | 787 | 96.1 | Plus |
Dana\GF21286-PA | 147 | GF21286-PA | 1..146 | 1..149 | 218 | 37.3 | Plus |
Dana\GF12835-PA | 149 | GF12835-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12101-PA | 155 | GG12101-PA | 1..155 | 1..155 | 797 | 99.4 | Plus |
Dere\GG18489-PA | 147 | GG18489-PA | 1..146 | 1..149 | 218 | 37.3 | Plus |
Dere\GG20265-PA | 149 | GG20265-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Dere\GG24532-PA | 193 | GG24532-PA | 64..191 | 26..148 | 136 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21626-PA | 155 | GH21626-PA | 1..155 | 1..155 | 765 | 94.8 | Plus |
Dgri\GH19638-PA | 89 | GH19638-PA | 1..89 | 67..155 | 436 | 93.3 | Plus |
Dgri\GH24922-PA | 158 | GH24922-PA | 26..157 | 15..149 | 213 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mlc1-PD | 155 | CG5596-PD | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PB | 155 | CG5596-PB | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PA | 155 | CG5596-PA | 1..151 | 1..151 | 744 | 95.4 | Plus |
Mlc-c-PA | 147 | CG3201-PA | 1..146 | 1..149 | 226 | 37.3 | Plus |
Mlc-c-PB | 153 | CG3201-PB | 15..152 | 9..149 | 226 | 38.7 | Plus |
Cam-PD | 149 | CG8472-PD | 1..148 | 1..149 | 157 | 29.6 | Plus |
Cam-PC | 149 | CG8472-PC | 1..148 | 1..149 | 157 | 29.6 | Plus |
Cam-PE | 149 | CG8472-PE | 1..148 | 1..149 | 157 | 29.6 | Plus |
Cam-PB | 149 | CG8472-PB | 1..148 | 1..149 | 157 | 29.6 | Plus |
Cam-PA | 149 | CG8472-PA | 1..148 | 1..149 | 157 | 29.6 | Plus |
Acam-PB | 148 | CG17769-PB | 1..142 | 1..144 | 143 | 26.7 | Plus |
Acam-PA | 148 | CG17769-PA | 1..142 | 1..144 | 143 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10745-PA | 154 | GI10745-PA | 1..154 | 2..155 | 780 | 97.4 | Plus |
Dmoj\GI21775-PA | 153 | GI21775-PA | 15..152 | 9..149 | 217 | 38.7 | Plus |
Dmoj\GI20594-PA | 149 | GI20594-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13770-PA | 155 | GL13770-PA | 1..155 | 1..155 | 780 | 95.5 | Plus |
Dper\GL16470-PA | 153 | GL16470-PA | 15..152 | 9..149 | 222 | 39.4 | Plus |
Dper\GL10814-PA | 149 | GL10814-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Dper\GL11703-PA | 149 | GL11703-PA | 10..147 | 8..147 | 137 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Mlc1-PA | 155 | GA18996-PA | 1..155 | 1..155 | 780 | 95.5 | Plus |
Dpse\Mlc1-PB | 155 | GA18996-PB | 1..151 | 1..151 | 723 | 91.4 | Plus |
Dpse\GA22593-PA | 153 | GA22593-PA | 15..152 | 9..149 | 222 | 39.4 | Plus |
Dpse\GA24499-PA | 149 | GA24499-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Dpse\GA24239-PA | 149 | GA24239-PA | 10..149 | 8..149 | 135 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Mlc1-PA | 155 | GM16330-PA | 1..155 | 1..155 | 797 | 99.4 | Plus |
Dsec\GM12637-PA | 147 | GM12637-PA | 1..146 | 1..149 | 218 | 37.3 | Plus |
Dsec\GM21351-PA | 149 | GM21351-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Mlc1-PA | 155 | GD18066-PA | 1..155 | 1..155 | 797 | 99.4 | Plus |
Dsim\GD16253-PA | 147 | GD16253-PA | 1..146 | 1..149 | 218 | 37.3 | Plus |
Dsim\GD10849-PA | 149 | GD10849-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Mlc1-PA | 154 | GJ10688-PA | 1..154 | 2..155 | 779 | 97.4 | Plus |
Dvir\GJ16948-PA | 146 | GJ16948-PA | 14..145 | 15..149 | 215 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11324-PA | 155 | GK11324-PA | 1..155 | 1..155 | 786 | 96.8 | Plus |
Dwil\GK24961-PA | 619 | GK24961-PA | 472..618 | 2..149 | 229 | 40.4 | Plus |
Dwil\GK14989-PA | 174 | GK14989-PA | 27..173 | 8..149 | 144 | 27.2 | Plus |
Dwil\GK22183-PA | 149 | GK22183-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Mlc1-PA | 155 | GE10549-PA | 1..155 | 1..155 | 795 | 99.4 | Plus |
Dyak\GE16807-PA | 147 | GE16807-PA | 1..146 | 1..149 | 218 | 37.3 | Plus |
Dyak\Cam-PA | 149 | GE12425-PA | 1..148 | 1..149 | 140 | 29.6 | Plus |
Translation from 82 to 549
> RE07220.hyp MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD PVVFD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mlc1-PD | 155 | CG5596-PD | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PB | 155 | CG5596-PB | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PA | 155 | CG5596-PA | 1..151 | 1..151 | 744 | 95.4 | Plus |
Mlc-c-PA | 147 | CG3201-PA | 1..146 | 1..149 | 226 | 37.3 | Plus |
Mlc-c-PB | 153 | CG3201-PB | 15..152 | 9..149 | 226 | 38.7 | Plus |