BDGP Sequence Production Resources |
Search the DGRC for RE07428
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 74 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | scramb1-RB |
Protein status: | RE07428.pep: gold |
Sequenced Size: | 1665 |
Gene | Date | Evidence |
---|---|---|
scramb1-RC | 2009-06-22 | Replacement based on scoring |
1665 bp assembled on 2009-07-30
GenBank Submission: BT089011.1
> RE07428.complete AGTTCATCTCTGTGCTGCAGAGCAGGCAGTCGTGTCAGTCTGAAAAAATG TCCACCGAAAACCCAGCAAGTTGTGTTTCCACGCTGGACCTAAGTGGTGG CGAAAATCGGGGAAATCCGGAGGAATCTCATTCCAGGGGCGTGAGGAGCG GCTCCAAGGTGCTGCGCTTAATCTGGCACTCGCTGTATAGCCAGTATAAT CAGATCTGCTCGAGATCCCAGACTCTAAGGCAACTGGTTTGCAGGGAAGC CAACAAACCACTGCCCAAGAAACTCAGGCACACAATGAGACTAAATAAGT CGGCCAAGCGAAAGGGATACGAGTTCTACATGAGCGACGAGGACAGGAGG AGACTGGATGAGTATACCTACCGGAATTCCGAACTGTCCGCGCGGATTGG AGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGGTCGAGCTG CTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACGATCAAGAA CGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGACTGCTGCA CGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGGGTCTTTGAT AACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCCTGCTCCTC CTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGCACCACCCG GCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATCTGTTCGCCATCC TTCCGCATCCTCAACCACGTGGGTGACACGGTGATGCGCATCGAAGGACC TTTCTGCACCTTTTCGCTCTGCGGCGACGTTGAGTTCAATGTTGTTTCGC TCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCGGGCCTGGCA CGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTTCCCACTGGA CTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATAG ATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGGA ATGCTTTAGGAATCGGGTGCTGGCTTGTGCGTGAATTGTTTATGCGTTGC AACCGATTGTTGTGGCGTTTGTGGCAATTGCGAATGCGATTGCGACGATT AAATGTTGTGCATTATCTTGAGTTGCAACTTTATCCAAATATCTTCCCGG TGAACTGTCGCGTACTAGTCTTCTGTACCAAATGCTTATTGATGAAAATG GATCGCACTAATGAAACTCCTTGTTAATTTTGATGAACATACTGAACTCA GGCTTCCTTCGAGAGGACATTGCCAGAATATAAAACTAACTTTAAGTTAG CATTTTTTGCTATTTTGCCACAGCAATTACTTGTGTAAAGTATTCAACGA CAAATCAGCTTTATTTATGAATTTTGTATTGATGCTCTGAAGCGACAACT AACTAACGAATGATTCGTTATTGAAACATGTACTTTAAACTGTATGTTAA GTGTCTTATGGAAAGAAAAATATATTTAACATTGTATATTGTTAAGCATC AGGAAATTTATATATATCCCTACTGATATTATGGAACAGAAGGTTTTCTT TTTATGTATTACAACAAAAGTTAAATAAATTATAAACTTATATACTGGTA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scramb1-RB | 1723 | scramb1-RB | 14..1662 | 1..1649 | 8245 | 100 | Plus |
scramb1-RA | 2126 | scramb1-RA | 760..2065 | 344..1649 | 6515 | 99.9 | Plus |
scramb1-RC | 1638 | scramb1-RC | 351..1638 | 360..1647 | 6440 | 100 | Plus |
scramb1-RC | 1638 | scramb1-RC | 5..353 | 1..349 | 1745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 10212238..10212887 | 1649..1000 | 3175 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 10213359..10213853 | 842..348 | 2400 | 99 | Minus |
chr3L | 24539361 | chr3L | 10214636..10214985 | 350..1 | 1690 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 10213143..10213302 | 1000..841 | 770 | 98.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 10220483..10221132 | 1649..1000 | 3250 | 100 | Minus |
3L | 28110227 | 3L | 10221609..10222103 | 842..348 | 2475 | 100 | Minus |
3L | 28110227 | 3L | 10222905..10223254 | 350..1 | 1750 | 100 | Minus |
3L | 28110227 | 3L | 10221393..10221552 | 1000..841 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 10213583..10214232 | 1649..1000 | 3250 | 100 | Minus |
3L | 28103327 | 3L | 10214709..10215203 | 842..348 | 2475 | 100 | Minus |
3L | 28103327 | 3L | 10216005..10216354 | 350..1 | 1750 | 100 | Minus |
3L | 28103327 | 3L | 10214493..10214652 | 1000..841 | 800 | 100 | Minus |
3L | 28103327 | 3L | 3045001..3045113 | 971..859 | 175 | 76.9 | Minus |
3L | 28103327 | 3L | 3046009..3046105 | 557..461 | 155 | 77.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 5084..5137 | 1585..1638 | 144 | 74.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 10212238..10212887 | 1000..1649 | 99 | <- | Minus |
chr3L | 10213144..10213302 | 841..999 | 98 | <- | Minus |
chr3L | 10213361..10213851 | 350..840 | 98 | <- | Minus |
chr3L | 10214637..10214985 | 1..349 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RA | 532..1251 | 341..1059 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RA | 532..1251 | 341..1059 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RC | 1..999 | 48..1059 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RC | 1..999 | 48..1059 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RB | 5..1651 | 1..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RB | 5..1651 | 1..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RB | 7..1655 | 1..1649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scramb1-RB | 7..1655 | 1..1649 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10220483..10221132 | 1000..1649 | 100 | <- | Minus |
3L | 10221394..10221552 | 841..999 | 100 | <- | Minus |
3L | 10221611..10222101 | 350..840 | 100 | <- | Minus |
3L | 10222906..10223254 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10220483..10221132 | 1000..1649 | 100 | <- | Minus |
3L | 10221394..10221552 | 841..999 | 100 | <- | Minus |
3L | 10221611..10222101 | 350..840 | 100 | <- | Minus |
3L | 10222906..10223254 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10220483..10221132 | 1000..1649 | 100 | <- | Minus |
3L | 10221394..10221552 | 841..999 | 100 | <- | Minus |
3L | 10221611..10222101 | 350..840 | 100 | <- | Minus |
3L | 10222906..10223254 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 10213583..10214232 | 1000..1649 | 100 | <- | Minus |
arm_3L | 10214494..10214652 | 841..999 | 100 | <- | Minus |
arm_3L | 10214711..10215201 | 350..840 | 100 | <- | Minus |
arm_3L | 10216006..10216354 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10213583..10214232 | 1000..1649 | 100 | <- | Minus |
3L | 10214494..10214652 | 841..999 | 100 | <- | Minus |
3L | 10214711..10215201 | 350..840 | 100 | <- | Minus |
3L | 10216006..10216354 | 1..349 | 100 | Minus |
Translation from 357 to 1058
> RE07428.pep MSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNAL GQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCL FPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFC TFSLCGDVEFNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLD VRMKAVLLGATFLIDAMFFEKAGNQETDRPGML*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23835-PA | 392 | GF23835-PA | 160..392 | 1..233 | 1210 | 95.3 | Plus |
Dana\GF10228-PA | 260 | GF10228-PA | 39..260 | 1..221 | 743 | 59 | Plus |
Dana\GF12436-PA | 376 | GF12436-PA | 168..374 | 13..221 | 243 | 29.8 | Plus |
Dana\GF23837-PA | 703 | GF23837-PA | 1..197 | 14..224 | 209 | 27.2 | Plus |
Dana\GF23836-PA | 206 | GF23836-PA | 4..194 | 17..218 | 191 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13979-PA | 408 | GG13979-PA | 176..408 | 1..233 | 1238 | 97 | Plus |
Dere\GG14486-PA | 263 | GG14486-PA | 42..263 | 1..221 | 758 | 59.9 | Plus |
Dere\GG22697-PA | 275 | GG22697-PA | 67..272 | 13..220 | 229 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16555-PA | 378 | GH16555-PA | 146..378 | 1..233 | 1157 | 88.8 | Plus |
Dgri\GH15491-PA | 271 | GH15491-PA | 55..270 | 1..220 | 548 | 47.3 | Plus |
Dgri\GH22506-PA | 224 | GH22506-PA | 70..223 | 72..221 | 449 | 57.7 | Plus |
Dgri\GH20589-PA | 275 | GH20589-PA | 67..273 | 13..221 | 219 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scramb1-PB | 233 | CG32056-PB | 1..233 | 1..233 | 1250 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 184..416 | 1..233 | 1250 | 100 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..332 | 2..233 | 1245 | 100 | Plus |
scramb2-PA | 263 | CG1893-PA | 42..263 | 1..221 | 749 | 59.9 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 13..220 | 236 | 29.1 | Plus |
CG9084-PC | 281 | CG9084-PC | 67..278 | 13..220 | 219 | 28.3 | Plus |
CG9084-PE | 145 | CG9084-PE | 1..142 | 77..220 | 148 | 29.5 | Plus |
CG9084-PD | 145 | CG9084-PD | 1..142 | 77..220 | 148 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13845-PA | 380 | GI13845-PA | 148..380 | 1..233 | 1134 | 88 | Plus |
Dmoj\GI19735-PA | 275 | GI19735-PA | 67..273 | 13..221 | 227 | 27 | Plus |
Dmoj\GI16767-PA | 230 | GI16767-PA | 11..217 | 12..222 | 222 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11735-PA | 399 | GL11735-PA | 167..399 | 1..233 | 1183 | 91.8 | Plus |
Dper\GL11737-PA | 247 | GL11737-PA | 34..247 | 8..221 | 890 | 75.7 | Plus |
Dper\GL16303-PA | 256 | GL16303-PA | 40..255 | 1..220 | 705 | 59.3 | Plus |
Dper\GL20642-PA | 273 | GL20642-PA | 65..270 | 13..220 | 236 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16644-PA | 397 | GA16644-PA | 165..397 | 1..233 | 1180 | 91.8 | Plus |
Dpse\GA23464-PA | 247 | GA23464-PA | 34..247 | 8..221 | 892 | 75.7 | Plus |
Dpse\GA15113-PA | 261 | GA15113-PA | 40..260 | 1..220 | 745 | 61.5 | Plus |
Dpse\GA21529-PA | 273 | GA21529-PA | 65..270 | 13..220 | 236 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24815-PA | 416 | GM24815-PA | 184..416 | 1..233 | 1267 | 100 | Plus |
Dsec\GM14090-PA | 263 | GM14090-PA | 42..263 | 1..221 | 740 | 59 | Plus |
Dsec\GM20472-PA | 275 | GM20472-PA | 67..272 | 13..220 | 229 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12867-PA | 416 | GD12867-PA | 184..416 | 1..233 | 1262 | 99.1 | Plus |
Dsim\GD13361-PA | 263 | GD13361-PA | 42..263 | 1..221 | 744 | 59.5 | Plus |
Dsim\GD25941-PA | 275 | GD25941-PA | 67..272 | 13..220 | 229 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11709-PA | 410 | GJ11709-PA | 178..410 | 1..233 | 1160 | 89.7 | Plus |
Dvir\GJ18435-PA | 275 | GJ18435-PA | 67..273 | 13..221 | 232 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24075-PA | 399 | GK24075-PA | 167..399 | 1..233 | 1166 | 90.6 | Plus |
Dwil\GK17620-PA | 271 | GK17620-PA | 50..271 | 1..221 | 742 | 59.9 | Plus |
Dwil\GK23558-PA | 240 | GK23558-PA | 50..222 | 1..172 | 545 | 58.4 | Plus |
Dwil\GK20657-PA | 275 | GK20657-PA | 67..272 | 13..220 | 233 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20277-PA | 408 | GE20277-PA | 176..408 | 1..233 | 1250 | 98.7 | Plus |
Dyak\GE21674-PA | 263 | GE21674-PA | 42..263 | 1..221 | 748 | 59.9 | Plus |
Dyak\GE13050-PA | 274 | GE13050-PA | 66..271 | 13..220 | 236 | 28.5 | Plus |
Translation from 357 to 1058
> RE07428.hyp MSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNAL GQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCL FPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFC TFSLCGDVEFNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLD VRMKAVLLGATFLIDAMFFEKAGNQETDRPGML*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scramb1-PB | 233 | CG32056-PB | 1..233 | 1..233 | 1250 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 184..416 | 1..233 | 1250 | 100 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..332 | 2..233 | 1245 | 100 | Plus |
scramb2-PA | 263 | CG1893-PA | 42..263 | 1..221 | 749 | 59.9 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 13..220 | 236 | 29.1 | Plus |