Clone RE07468 Report

Search the DGRC for RE07468

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:74
Well:68
Vector:pFlc-1
Associated Gene/TranscriptRpn11-RA
Protein status:RE07468.pep: gold
Preliminary Size:1176
Sequenced Size:1249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18174 2001-12-14 Blastp of sequenced clone
CG18174 2002-01-01 Sim4 clustering to Release 2
Rpn11 2008-04-29 Release 5.5 accounting
Rpn11 2008-08-15 Release 5.9 accounting
Rpn11 2008-12-18 5.12 accounting

Clone Sequence Records

RE07468.complete Sequence

1249 bp (1249 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070977

> RE07468.complete
GATAGCTTTTCGATAGGCGATGAGCGATACAACCCTGTTGCGAGTATTAC
TTGCAATTCTGCAAAATCAAACGAGACGGCTTTGTGTTTTTTGTTGCTGC
TTTCGACGAGGAACGTAAATTACACGTAAAACAGTAGGAAATAGTTGATA
CTTGCCCCCGATCACAGAGTGTCTACAAATCCCAGAGCCGCATAAAATGG
ATCGTCTGCTACGTCTTGGAGGTGCTATGCCACAGGCCGCCCCGCCCACA
GATGCGCCCGTCGTAGACACCGCCGAGCAGGTGTACATCTCGTCCTTGGC
CCTGCTCAAGATGCTTAAGCACGGACGGGCCGGCGTGCCCATGGAGGTGA
TGGGTCTGATGTTGGGCGAATTCGTGGACGACTACACGGTGCAGGTCATC
GATGTGTTCGCCATGCCGCAAACGGGTACTGGAGTATCCGTAGAGGCCGT
GGATCCCGTCTTTCAGGCGAAGATGTTGGACATGCTGAAGCAGACGGGTC
GACCCGAAATGGTCGTCGGCTGGTATCACTCGCATCCCGGTTTCGGCTGC
TGGCTGTCCGGCGTGGACATCAATACGCAGCAATCCTTCGAGGCGCTGTC
GGAGCGAGCCGTAGCCGTCGTCGTCGATCCCATTCAGTCTGTCAAGGGCA
AAGTGGTCATCGATGCCTTCCGCCTGATCAATCCCAACATGCTTGTGCTG
GGACAGGAGCCCCGGCAGACAACCTCCAATTTGGGTCATCTGCAAAAGCC
CTCCGTACAGGCCCTGATCCACGGGCTCAATCGCCACTACTACTCGATTA
GCATAAACTACCGCAAGAACGAACTGGAGCAGAAGATGCTTCTCAATCTG
CACAAAAAGTCGTGGAAGGACGGCCTCACGTTGTCCGACTACAATGAGCA
CTGTTCCATCAACGAGGACACCGTGGCCGAGATGCTGGATCTCGCCAAGA
ACTACAACAAGTCACTGGAGGACGAGGAGAAAATGACGCCCGAGCAGCTG
GCGATCAAGAACGTGGGCAAGCAGGACCCCAAGCGGCATTTGGAGGAGAA
GGTGGACAAGGTTATGCAGAACAATATTGTGCAGTGCCTGGGCGCCATGC
TGGACACCATAGTCTTTAAGTGAATTTATGCATTTGCTCTCCTCAAACCA
ATTTCCCTTCATACCCACAAATCGCTAAGCTAAACGTATTAACTGATAAA
AAAAAAGGCTTTTGTTCAGAGCAGAGTTTTACACAAAAAAAAAAAAAAA

RE07468.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1341 Rpn11-RA 88..1324 1..1237 6185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5057886..5058661 961..186 3880 100 Minus
chr2L 23010047 chr2L 5057504..5057778 1234..960 1375 100 Minus
chr2L 23010047 chr2L 5058730..5058916 187..1 935 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059561 961..186 3880 100 Minus
2L 23513712 2L 5058401..5058678 1237..960 1390 100 Minus
2L 23513712 2L 5059630..5059816 187..1 935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059561 961..186 3880 100 Minus
2L 23513712 2L 5058401..5058678 1237..960 1390 100 Minus
2L 23513712 2L 5059630..5059816 187..1 935 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:29:12 has no hits.

RE07468.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:24 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5057504..5057776 962..1234 100 <- Minus
chr2L 5057886..5058659 188..961 100 <- Minus
chr2L 5058730..5058916 1..187 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:32 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 197..1123 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:41 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 197..1123 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:43 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 197..1123 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:18 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 197..1123 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:04 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 197..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:55 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..1234 1..1234 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:41 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..1234 1..1234 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:43 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..1208 27..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:18 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..1234 1..1234 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:04 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..1208 27..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:24 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5058404..5058676 962..1234 100 <- Minus
2L 5058786..5059559 188..961 100 <- Minus
2L 5059630..5059816 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:24 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5058404..5058676 962..1234 100 <- Minus
2L 5058786..5059559 188..961 100 <- Minus
2L 5059630..5059816 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:24 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5058404..5058676 962..1234 100 <- Minus
2L 5058786..5059559 188..961 100 <- Minus
2L 5059630..5059816 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:43 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5059630..5059816 1..187 100   Minus
arm_2L 5058404..5058676 962..1234 100 <- Minus
arm_2L 5058786..5059559 188..961 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:12 Download gff for RE07468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5059630..5059816 1..187 100   Minus
2L 5058786..5059559 188..961 100 <- Minus
2L 5058404..5058676 962..1234 100 <- Minus

RE07468.hyp Sequence

Translation from 196 to 1122

> RE07468.hyp
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFK*

RE07468.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-PA 308 CG18174-PA 1..308 1..308 1592 100 Plus
CSN5-PB 325 CG14884-PB 50..273 27..256 376 38 Plus
CSN5-PA 327 CG14884-PA 50..273 27..256 376 38 Plus

RE07468.pep Sequence

Translation from 196 to 1122

> RE07468.pep
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFK*

RE07468.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14156-PA 308 GF14156-PA 1..308 1..308 1643 99.4 Plus
Dana\GF18500-PA 320 GF18500-PA 52..286 29..269 393 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24318-PA 308 GG24318-PA 1..308 1..308 1651 100 Plus
Dere\GG17007-PA 327 GG17007-PA 52..273 29..256 381 38.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10267-PA 308 GH10267-PA 1..308 1..308 1648 99.7 Plus
Dgri\GH19288-PA 327 GH19288-PA 52..273 29..256 383 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-PA 308 CG18174-PA 1..308 1..308 1592 100 Plus
CSN5-PB 325 CG14884-PB 50..273 27..256 376 38 Plus
CSN5-PA 327 CG14884-PA 50..273 27..256 376 38 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15638-PA 308 GI15638-PA 1..308 1..308 1648 99.7 Plus
Dmoj\GI23503-PA 327 GI23503-PA 52..273 29..256 383 38.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26475-PA 308 GL26475-PA 1..308 1..308 1644 99.4 Plus
Dper\GL22178-PA 327 GL22178-PA 52..273 29..256 377 38.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14824-PA 308 GA14824-PA 1..308 1..308 1647 99.7 Plus
Dpse\GA13321-PA 327 GA13321-PA 52..273 29..256 377 38.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18036-PA 308 GM18036-PA 1..308 1..308 1651 100 Plus
Dsec\GM15160-PA 327 GM15160-PA 52..273 29..256 378 38.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22663-PA 308 GD22663-PA 1..308 1..308 1651 100 Plus
Dsim\GD19103-PA 321 GD19103-PA 52..267 29..256 361 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10111-PA 308 GJ10111-PA 1..308 1..308 1648 99.7 Plus
Dvir\GJ10255-PA 327 GJ10255-PA 52..273 29..256 381 38.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23790-PA 308 GK23790-PA 1..308 1..308 1641 99 Plus
Dwil\GK14483-PA 327 GK14483-PA 52..273 29..256 381 38.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Rpn11-PA 308 GE18698-PA 1..308 1..308 1651 100 Plus
Dyak\CSN5-PA 327 GE24400-PA 52..273 29..256 381 38.8 Plus