BDGP Sequence Production Resources |
Search the DGRC for RE07468
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 74 |
Well: | 68 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rpn11-RA |
Protein status: | RE07468.pep: gold |
Preliminary Size: | 1176 |
Sequenced Size: | 1249 |
Gene | Date | Evidence |
---|---|---|
CG18174 | 2001-12-14 | Blastp of sequenced clone |
CG18174 | 2002-01-01 | Sim4 clustering to Release 2 |
Rpn11 | 2008-04-29 | Release 5.5 accounting |
Rpn11 | 2008-08-15 | Release 5.9 accounting |
Rpn11 | 2008-12-18 | 5.12 accounting |
1249 bp (1249 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070977
> RE07468.complete GATAGCTTTTCGATAGGCGATGAGCGATACAACCCTGTTGCGAGTATTAC TTGCAATTCTGCAAAATCAAACGAGACGGCTTTGTGTTTTTTGTTGCTGC TTTCGACGAGGAACGTAAATTACACGTAAAACAGTAGGAAATAGTTGATA CTTGCCCCCGATCACAGAGTGTCTACAAATCCCAGAGCCGCATAAAATGG ATCGTCTGCTACGTCTTGGAGGTGCTATGCCACAGGCCGCCCCGCCCACA GATGCGCCCGTCGTAGACACCGCCGAGCAGGTGTACATCTCGTCCTTGGC CCTGCTCAAGATGCTTAAGCACGGACGGGCCGGCGTGCCCATGGAGGTGA TGGGTCTGATGTTGGGCGAATTCGTGGACGACTACACGGTGCAGGTCATC GATGTGTTCGCCATGCCGCAAACGGGTACTGGAGTATCCGTAGAGGCCGT GGATCCCGTCTTTCAGGCGAAGATGTTGGACATGCTGAAGCAGACGGGTC GACCCGAAATGGTCGTCGGCTGGTATCACTCGCATCCCGGTTTCGGCTGC TGGCTGTCCGGCGTGGACATCAATACGCAGCAATCCTTCGAGGCGCTGTC GGAGCGAGCCGTAGCCGTCGTCGTCGATCCCATTCAGTCTGTCAAGGGCA AAGTGGTCATCGATGCCTTCCGCCTGATCAATCCCAACATGCTTGTGCTG GGACAGGAGCCCCGGCAGACAACCTCCAATTTGGGTCATCTGCAAAAGCC CTCCGTACAGGCCCTGATCCACGGGCTCAATCGCCACTACTACTCGATTA GCATAAACTACCGCAAGAACGAACTGGAGCAGAAGATGCTTCTCAATCTG CACAAAAAGTCGTGGAAGGACGGCCTCACGTTGTCCGACTACAATGAGCA CTGTTCCATCAACGAGGACACCGTGGCCGAGATGCTGGATCTCGCCAAGA ACTACAACAAGTCACTGGAGGACGAGGAGAAAATGACGCCCGAGCAGCTG GCGATCAAGAACGTGGGCAAGCAGGACCCCAAGCGGCATTTGGAGGAGAA GGTGGACAAGGTTATGCAGAACAATATTGTGCAGTGCCTGGGCGCCATGC TGGACACCATAGTCTTTAAGTGAATTTATGCATTTGCTCTCCTCAAACCA ATTTCCCTTCATACCCACAAATCGCTAAGCTAAACGTATTAACTGATAAA AAAAAAGGCTTTTGTTCAGAGCAGAGTTTTACACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn11-RA | 1341 | Rpn11-RA | 88..1324 | 1..1237 | 6185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 5057886..5058661 | 961..186 | 3880 | 100 | Minus |
chr2L | 23010047 | chr2L | 5057504..5057778 | 1234..960 | 1375 | 100 | Minus |
chr2L | 23010047 | chr2L | 5058730..5058916 | 187..1 | 935 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 5058786..5059561 | 961..186 | 3880 | 100 | Minus |
2L | 23513712 | 2L | 5058401..5058678 | 1237..960 | 1390 | 100 | Minus |
2L | 23513712 | 2L | 5059630..5059816 | 187..1 | 935 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 5057504..5057776 | 962..1234 | 100 | <- | Minus |
chr2L | 5057886..5058659 | 188..961 | 100 | <- | Minus |
chr2L | 5058730..5058916 | 1..187 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..927 | 197..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..927 | 197..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..927 | 197..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..927 | 197..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..927 | 197..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..1234 | 1..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..1234 | 1..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..1208 | 27..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..1234 | 1..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn11-RA | 1..1208 | 27..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5058404..5058676 | 962..1234 | 100 | <- | Minus |
2L | 5058786..5059559 | 188..961 | 100 | <- | Minus |
2L | 5059630..5059816 | 1..187 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5058404..5058676 | 962..1234 | 100 | <- | Minus |
2L | 5058786..5059559 | 188..961 | 100 | <- | Minus |
2L | 5059630..5059816 | 1..187 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5058404..5058676 | 962..1234 | 100 | <- | Minus |
2L | 5058786..5059559 | 188..961 | 100 | <- | Minus |
2L | 5059630..5059816 | 1..187 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 5059630..5059816 | 1..187 | 100 | Minus | |
arm_2L | 5058404..5058676 | 962..1234 | 100 | <- | Minus |
arm_2L | 5058786..5059559 | 188..961 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5059630..5059816 | 1..187 | 100 | Minus | |
2L | 5058786..5059559 | 188..961 | 100 | <- | Minus |
2L | 5058404..5058676 | 962..1234 | 100 | <- | Minus |
Translation from 196 to 1122
> RE07468.hyp MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA MLDTIVFK*
Translation from 196 to 1122
> RE07468.pep MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA MLDTIVFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14156-PA | 308 | GF14156-PA | 1..308 | 1..308 | 1643 | 99.4 | Plus |
Dana\GF18500-PA | 320 | GF18500-PA | 52..286 | 29..269 | 393 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24318-PA | 308 | GG24318-PA | 1..308 | 1..308 | 1651 | 100 | Plus |
Dere\GG17007-PA | 327 | GG17007-PA | 52..273 | 29..256 | 381 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10267-PA | 308 | GH10267-PA | 1..308 | 1..308 | 1648 | 99.7 | Plus |
Dgri\GH19288-PA | 327 | GH19288-PA | 52..273 | 29..256 | 383 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn11-PA | 308 | CG18174-PA | 1..308 | 1..308 | 1592 | 100 | Plus |
CSN5-PB | 325 | CG14884-PB | 50..273 | 27..256 | 376 | 38 | Plus |
CSN5-PA | 327 | CG14884-PA | 50..273 | 27..256 | 376 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15638-PA | 308 | GI15638-PA | 1..308 | 1..308 | 1648 | 99.7 | Plus |
Dmoj\GI23503-PA | 327 | GI23503-PA | 52..273 | 29..256 | 383 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26475-PA | 308 | GL26475-PA | 1..308 | 1..308 | 1644 | 99.4 | Plus |
Dper\GL22178-PA | 327 | GL22178-PA | 52..273 | 29..256 | 377 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14824-PA | 308 | GA14824-PA | 1..308 | 1..308 | 1647 | 99.7 | Plus |
Dpse\GA13321-PA | 327 | GA13321-PA | 52..273 | 29..256 | 377 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18036-PA | 308 | GM18036-PA | 1..308 | 1..308 | 1651 | 100 | Plus |
Dsec\GM15160-PA | 327 | GM15160-PA | 52..273 | 29..256 | 378 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22663-PA | 308 | GD22663-PA | 1..308 | 1..308 | 1651 | 100 | Plus |
Dsim\GD19103-PA | 321 | GD19103-PA | 52..267 | 29..256 | 361 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10111-PA | 308 | GJ10111-PA | 1..308 | 1..308 | 1648 | 99.7 | Plus |
Dvir\GJ10255-PA | 327 | GJ10255-PA | 52..273 | 29..256 | 381 | 38.4 | Plus |