Clone RE07805 Report

Search the DGRC for RE07805

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:78
Well:5
Vector:pFlc-1
Associated Gene/TranscriptPde8-RE
Protein status:RE07805.pep: gold
Preliminary Size:4850
Sequenced Size:5404

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5411 2004-12-02 Blastp of sequenced clone
Pde8 2008-04-29 Release 5.5 accounting
Pde8 2008-08-15 Release 5.9 accounting
Pde8 2008-12-18 5.12 accounting

Clone Sequence Records

RE07805.complete Sequence

5404 bp (5404 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021326

> RE07805.complete
GCATTCGGATTCGGATTCGAACTCGTACTGGCGGCACTCGCACGAATTTA
GTCTAGAGTCTGATATAAATATTAAAATAAGTATAAGAAGCGGCGCACAG
CTACGTCTGCCCGCCTATGTGCATAAAATATCACAAGCAACAGGCGGCCA
AGCAACAACTACCAGCTGAACGACAAATTTTTGGTTTCGTTATCCGGATC
ATGTGACCAGTATCTCCGCTGGCCATCAGTCAATCAATCAGCAGACCGCA
GCCCAAAAATGTTTCAATTATGTTATCGCCAGCAACAACGACATCGTCCA
GAATCGAAAGCATCGAACCAGAGCAGCAGCAACCACAAGAAGGCAGCCGC
ACTGTCCAGGACGAAGGAGTAAGACGTGCAATTCCGCAAAGGCTAAATCC
GGATACGGAACCGGAGCCCACTGCAAAACCGAAATCACAAGGCAACCAAG
AGCAATTTAGCATAGCAACCGCAACGCAATCAGCCAGGCCAGGATCAGAA
GCAGGACTTCTTAGCCATGGGCTGTTCTCCGAGTACTTTGCCCCCCGCCC
CTTCCGCTGGTCAGACCGGCGAACGAGGATCCCTGCCGCTGGACGCCTCT
GAAAAGGACGAGAGCCGCCTCTTCTGCATCAAGCTGCGGCGCAGCCGCCT
GCGCCGCTGCAGCTGTGGGGGCGTGACCTTGCAGCCCCCCAGCGACGGGA
ATGGCAGCACGGCCGGAGACAACCTGTGCGGCCAGGTGCTCCTCAATCCG
CTGCAGACCAAGAGCGAGGCCGACTACGAAAAGCTGAGCACCGGCAAAAA
GGACTCGATTGTGACGGTGGCCGCCCTGGGCAACTTTACACACAGCGTAG
TGCGACGGGCCACTGGAAGCACAGGCACATCGGGCACCAGTTCATCCGGC
GGGAACAGCCGTCCAGGTCACCGCAAGTCATCACTAGCCCTCGCTCTCAC
CCCGGAAGATGAGCCGATGGACGTCTACCAGCGAAATCTCATGGACCTGA
AGTATCCAACCGTGCTACCACCGAATCCCCCACTTAAGGCCCTTCTGGTT
TTCCACAAGTCGGACAGCATCTGCGAGGCGATCACCGCGGCCTGCCAGCG
CCACCAGCTGGACGTTACGCTGGTCAAGTCCAAGGAGGAGGCCCTGGACA
CTCTGCAGAAGTCGTACGCCACCGCCCAGTGCTACCACCTAATCATAATT
GATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGAACCAT
TCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTGCAAGA
AGAGTTTCTTCGAAAAGGATGATGTGCTAATTGCTCTATTGGACGCTGGC
GTTAATAGATGCGTAGCGGAGACGACCAACCTGGCCATGTGCAGTGTGGA
ACTGAAGCAGATACTGCACTCCATCATCCGGCCGCACAATGTCATGTCCA
CTCAACAGGCCCTCTACACGGCTCTGCATCGGCTAAAGGAGGTGGTGCTC
ATCACGGACGACTTGCTGCGGATTCAGTACGCGAACCGTGCCACCGAGAG
GCTGCTCAACATGCGGCTGGACGAGATCATTAGCAAGCAGCTGGAGGACA
TATTTGTGTCGGACCTCTCCACCATCAGCGAGCAGTGCAAGAACATCAAG
GAGTTCGATGGCATCCTGACGGTGCGTCGCAAGAGCCAGGAGGGCATACC
CATGCACGTGCGCGTCGTGCCGGTGGCCTGCATAGGCAGCGCCCCCACGC
ACCTGATTTTCAACTTTGATGTGCCCGGCGGGCAGATGGACTTCATAGCC
ACGCTGCCGCAGCCCAAGGAGGCGCCTCGGGGCTCCCTGCACTCGGTGCG
GCGCTGCAGCTTTGATGTCCGCTCCATCGCCTCGGACGGATTGCGGAGGA
CGAGCTTGGCCAAGCTGACGTCGCTGCCACTGGAGGCACCCATCACTAAA
GAGAATTGTTCGGCCGATGAGGCGCGTCTCATAGACAAGGTCTTGGAGTT
CCTGAAGCGTGAGGGACTCTACAGTCCGCAGATGAAGGAGATACGAACGG
ACGATCCCATAGCCACCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGC
GTGTACTCATCGCGCCGCAGCTCGAATGACTCCATCATACGCACTGGCAG
CTCCACGAGAACTGCCGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCA
TCATCATGGAACTACTTGACGAATCTCTCAGCTGGGACTTTGATATTTTC
AAATTGGAGGAGATCACCGACTACCACCCGCTGCTCTACCTGGGCATGGA
GATGTTCCGCCGCTTCGACGTCTTTGCCACCCTGAACATCGATGAGAACG
TGTGCAAGGCGTGGTTGGCAGTGATTGAAGCCCACTACCGCAAGAGCAAC
ACATATCACAACAGCACCCATGCCGCGGATGTGATGCAGGCCACTGGCGC
TTTCATCACCCAACTAACCAACAAGGATATGCTGGTGATGGATCGCATGG
AGGAGGCGACTGCCTTGATCGCCGCCGCCGCCCACGATGTGGATCATCCT
GGTCGCTCATCCGCCTTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCT
ATACAATGATCTGACTGTGCTGGAGAACCATCACGCGGCAATCACCTTTA
AGCTGACACTGGGCGACGACAAGATCAACATTTTCAAGAACCTGGACAAG
GAGACATACAAGTCGGCACGCAGCACCATCATTGACATGATCCTGGCCAC
CGAGATGACCCGCCACTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTG
GCGGCGAGGAGCCGCGTGATCACAATCCCCAAACGGATGAGGAGACGTCC
ATACTCATGCGTCGCATGCTGATCAAAGTGGCCGATGTGAGCAATCCCGC
CAGGCCGATGCAATTCTGCATCGAGTGGGCCCGCCGGATAGCCGAGGAGT
ACTTCATGCAGACGGACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATG
CCGATGTTCGATCGGGCCACCTGCAGCATACCAAAGAGCCAGATCGGCTT
CATCGAATACATCATACAGGACATGATGCACGCCTGGGAGAGCTTCATCG
ACATGCCACAGCTGATCACCTACATGCAGATCAACTACTCGCAATGGAAG
AAGTACGACGAGCAGGGCGTCAACACGCTGGCGGAGATCATGGCCAAGCA
GCCACCGGTGGGCAAGATGGCCAACTCCAAATAGCATACGGCCTTCCGGA
GATTGTTCTCGGGTCTACTGAAGCCACTGCCGGCCCACGCGCCAGGTACC
TCCACGATTGGCGAGAACGAGATGGAGGACGTGCTCTAGTGACGGCGTCG
AAGGTCCTGCGACGTCTGACTCCGGACCCGCAGTCTCTCGGCCTAATCCT
CCCACTGAAGTCGCAGCTCATCACGGCTTGACGCCCACCCGAGTCCACCC
GCTCCCTGGACTGCCCCACACTTATCTCTGAACGGACCAACGGACTGGGG
GCGGTTGGCCCGAAATGGGCGGCTGGCTGGCTTACGAAGTGGTGCCCCTG
TGCGGTGTCACAAATGCGGTATCATGCAAAGCAAAACTAACTAAGGCAAA
CAAGTAAACAATTATTGGGCTGACTCAAAATTAAATGTTTAAGATGCATC
ACAAGAAGCGAACTTTCTATTTCTATATATAACTATATAAACCATGTGAG
TCTGTGTGTGCGTGAGTGTGTAAGTCCCTCCCTCCATCATCATATAAATG
TGTATGTGTTTAGGCTAACGAAAGCAGACTTGCAGACTAGCAAAGTAGCA
TGCTGTGCTAGCAAGCTAGCAAGCTGGCAAGAAGTCCCACAGCATATTGA
CCAGATCATATGGCGTGCGCTCCACTGTACCTGGCAACGGTATAATGTAT
AATAACAGTATAACGGTTTTGTAGACCGTATAGCGGTACTACCGACCCAA
GTGTTACAAGCATGTAGTTCTCTCCCATCATGAAGACAATCTCTGTTAAA
TACTGCGAGGCCAAGTAAATATAGTTTAATTGCTGTCCAAGTCAGATTCG
TAATCGGATTCGAATTGGGATTTGGATTTGGATTCGGGTTCGGAACGAGT
ACGAGGCCATAGCATAGATGAAGACTATACATATATACATATGCACATGC
GGGCGAGATCGCGGCAAGCACGATACATATATACATATATATACTGTACT
ATCACTAGCGACTAGCTGACCAGCTAACAACTACAAGTAAAACTGAAACA
AACTAATTCGAATCCACTCTTGAGACATATGAAATCCTATGGGGCCCCTT
TTACTACCTAATTATCTAGTTACCTACTTTCCTAACTGAAGAAAAACGCG
AAACGATGAGCTATCCCTAACTAATACTATTAATGTTGTTTAGCTTTCTA
AGCATACGGTATGAGAAATCAAACTAAACGCAAATGTTTACCAATTAAGT
GAAATCCTTTTTGAAATCTTTTTATCTAATTGACTGAACAAATTACATAT
ACATATATAAACCAGATCTATTAATACGAGTTGATAATACGTTCTTGTTA
TAACTAAAATGAAGAAATGAAATGGAAAAGCAAAATAATATATACAATAT
ACATATATATACAATTTATACAACTTTTACGAAGCATATTATACATATAT
ATATATATATATATTTATATATGTCATACGATATCGGCATTCATTCACAG
AGTTACAGTAATTTGTATGTGTTACCGCAGGTGTTAATCCGTGCTTCAGA
ATGTTTTGATAGAAGTTATATACACGTATACAAGTCCCTCTGTCCCTGTC
GACCTCCTGAACTGCAAACCAGCAACCCACCCACAACCAGTCTGCTCCAC
CCGACCAAAAACCACCACCCACCAGCCGACATTTTCCGTTCCCAACCCAC
ACGTTCGTATCACTATCACTACTGATCACTTTAGGTCGGAAAAATCAAAC
TGAGCGATAGGAGAATATAAATGTATTTGCATATTCAATGTTGTTAATAT
GTGTGTGTTTCAAATTGAATGTATTGGATTAATCGCGTAAGTTACAAGAG
CGCAAAAGTTGAATAAATAAAGCAAAAGCTGCTAGTAAAAGGCGAAAACA
ATTTACACGTTATGAAGAATATATGTATACATATAATATTTATAGATACG
GTACTACTACTACATGTTTCACAACACAACAAATGATAAATCTTTACATA
CAACTATGTATATTTGTTACTACATCTGTTTGCTCCTTGCAGGTTAAGGA
TTATAAATGTTAAGATTTAGTCAAATTTATTGTAAAAACCAAACACAACA
AAAAACAAAAGAAAAACAAACACAAACAAGAAACAAAACAAAACGCAAAT
AATACAAATAAAAATCCAGCAAAATGGAAATTATCTACAAAAAAAAAAAA
AAAA

RE07805.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RE 5407 Pde8-RE 18..5407 1..5389 26910 99.9 Plus
Pde8-RG 5448 Pde8-RG 1970..5412 1951..5392 17175 99.9 Plus
Pde8.e 5786 Pde8.e 2347..5786 1951..5389 17160 99.9 Plus
Pde8.e 5786 Pde8.e 418..2319 49..1950 9510 100 Plus
Pde8-RG 5448 Pde8-RG 35..1942 43..1950 9510 99.8 Plus
Pde8.e 5786 Pde8.e 23..71 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19564749..19567037 3092..5388 11005 99.1 Plus
chr2R 21145070 chr2R 19551487..19552081 189..783 2975 100 Plus
chr2R 21145070 chr2R 19564420..19564691 2821..3092 1345 99.6 Plus
chr2R 21145070 chr2R 19563605..19563856 2189..2440 1245 99.6 Plus
chr2R 21145070 chr2R 19563915..19564140 2438..2663 1115 99.6 Plus
chr2R 21145070 chr2R 19561979..19562193 1737..1951 1075 100 Plus
chr2R 21145070 chr2R 19560616..19560823 1037..1244 1010 99 Plus
chr2R 21145070 chr2R 19561742..19561912 1569..1739 840 99.4 Plus
chr2R 21145070 chr2R 19564203..19564361 2662..2820 765 98.7 Plus
chr2R 21145070 chr2R 19546606..19546745 50..189 700 100 Plus
chr2R 21145070 chr2R 19563250..19563391 1951..2092 695 99.3 Plus
chr2R 21145070 chr2R 19561556..19561670 1456..1570 575 100 Plus
chr2R 21145070 chr2R 19558175..19558287 869..981 565 100 Plus
chr2R 21145070 chr2R 19561311..19561410 1360..1459 500 100 Plus
chr2R 21145070 chr2R 19563450..19563549 2091..2190 500 100 Plus
chr2R 21145070 chr2R 19552143..19552230 782..869 440 100 Plus
chr2R 21145070 chr2R 19561005..19561066 1243..1304 310 100 Plus
chr2R 21145070 chr2R 19560491..19560551 979..1039 305 100 Plus
chr2R 21145070 chr2R 19561133..19561189 1303..1359 285 100 Plus
chr2R 21145070 chr2R 19545514..19545562 1..49 245 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23678547..23680848 3092..5392 11460 100 Plus
2R 25286936 2R 23665293..23665887 189..783 2975 100 Plus
2R 25286936 2R 23678218..23678489 2821..3092 1360 100 Plus
2R 25286936 2R 23677403..23677654 2189..2440 1260 100 Plus
2R 25286936 2R 23677713..23677938 2438..2663 1130 100 Plus
2R 25286936 2R 23675775..23675989 1737..1951 1075 100 Plus
2R 25286936 2R 23674412..23674619 1037..1244 1040 100 Plus
2R 25286936 2R 23675538..23675708 1569..1739 855 100 Plus
2R 25286936 2R 23678001..23678159 2662..2820 795 100 Plus
2R 25286936 2R 23677048..23677189 1951..2092 710 100 Plus
2R 25286936 2R 23660394..23660533 50..189 700 100 Plus
2R 25286936 2R 23675352..23675466 1456..1570 575 100 Plus
2R 25286936 2R 23671976..23672088 869..981 565 100 Plus
2R 25286936 2R 23677248..23677347 2091..2190 500 100 Plus
2R 25286936 2R 23675107..23675206 1360..1459 500 100 Plus
2R 25286936 2R 23665949..23666036 782..869 440 100 Plus
2R 25286936 2R 23674802..23674863 1243..1304 310 100 Plus
2R 25286936 2R 23674283..23674343 979..1039 305 100 Plus
2R 25286936 2R 23674929..23674985 1303..1359 285 100 Plus
2R 25286936 2R 23659304..23659352 1..49 245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23679746..23682047 3092..5392 11470 99.9 Plus
2R 25260384 2R 23666492..23667086 189..783 2975 100 Plus
2R 25260384 2R 23679417..23679688 2821..3092 1360 100 Plus
2R 25260384 2R 23678602..23678853 2189..2440 1260 100 Plus
2R 25260384 2R 23678912..23679137 2438..2663 1130 100 Plus
2R 25260384 2R 23676974..23677188 1737..1951 1075 100 Plus
2R 25260384 2R 23675611..23675818 1037..1244 1040 100 Plus
2R 25260384 2R 23676737..23676907 1569..1739 855 100 Plus
2R 25260384 2R 23679200..23679358 2662..2820 795 100 Plus
2R 25260384 2R 23678247..23678388 1951..2092 710 100 Plus
2R 25260384 2R 23661593..23661732 50..189 700 100 Plus
2R 25260384 2R 23676551..23676665 1456..1570 575 100 Plus
2R 25260384 2R 23673175..23673287 869..981 565 100 Plus
2R 25260384 2R 23678447..23678546 2091..2190 500 100 Plus
2R 25260384 2R 23676306..23676405 1360..1459 500 100 Plus
2R 25260384 2R 23667148..23667235 782..869 440 100 Plus
2R 25260384 2R 23676001..23676062 1243..1304 310 100 Plus
2R 25260384 2R 23675482..23675542 979..1039 305 100 Plus
2R 25260384 2R 23676128..23676184 1303..1359 285 100 Plus
2R 25260384 2R 23660503..23660551 1..49 245 100 Plus
Blast to na_te.dros performed 2019-03-16 21:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6871 280..365 136 68.2 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 12..210 4461..4663 131 55.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 13..170 4461..4622 124 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2537 280..444 123 57.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6415..6589 4461..4625 122 56.8 Plus

RE07805.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:17 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19545514..19545562 1..49 100 -> Plus
chr2R 19546606..19546745 50..189 100 -> Plus
chr2R 19563917..19564139 2440..2662 99 -> Plus
chr2R 19564204..19564361 2663..2820 98 -> Plus
chr2R 19551488..19552081 190..783 100 -> Plus
chr2R 19552145..19552229 784..868 100 -> Plus
chr2R 19558175..19558287 869..981 100 -> Plus
chr2R 19560494..19560550 982..1038 100 -> Plus
chr2R 19560618..19560823 1039..1244 99 -> Plus
chr2R 19561007..19561066 1245..1304 100 -> Plus
chr2R 19561135..19561189 1305..1359 100 -> Plus
chr2R 19561311..19561409 1360..1458 100 -> Plus
chr2R 19561559..19561669 1459..1569 100 -> Plus
chr2R 19561743..19561912 1570..1739 99 -> Plus
chr2R 19561982..19562192 1740..1950 100 -> Plus
chr2R 19563250..19563390 1951..2091 99 -> Plus
chr2R 19563451..19563549 2092..2190 100 -> Plus
chr2R 19563607..19563855 2191..2439 99 -> Plus
chr2R 19564420..19564690 2821..3091 99 -> Plus
chr2R 19564749..19565698 3092..4041 99 == Plus
chr2R 19565757..19566933 4100..5284 96 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:35:50 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..2718 517..3234 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:58:30 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RH 1..2718 517..3234 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:18 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..2718 517..3234 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:57:25 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..2718 517..3234 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:05 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..2718 517..3234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:49 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..5389 1..5388 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:58:30 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 18..5406 1..5388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:18 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 5..5393 1..5388 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:57:25 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1..5389 1..5388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:05 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 5..5393 1..5388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:17 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23674931..23674985 1305..1359 100 -> Plus
2R 23675107..23675205 1360..1458 100 -> Plus
2R 23675355..23675465 1459..1569 100 -> Plus
2R 23675539..23675708 1570..1739 100 -> Plus
2R 23665951..23666035 784..868 100 -> Plus
2R 23671976..23672088 869..981 100 -> Plus
2R 23674286..23674342 982..1038 100 -> Plus
2R 23674414..23674619 1039..1244 100 -> Plus
2R 23674804..23674863 1245..1304 100 -> Plus
2R 23659304..23659352 1..49 100 -> Plus
2R 23660394..23660533 50..189 100 -> Plus
2R 23665294..23665887 190..783 100 -> Plus
2R 23675778..23675988 1740..1950 100 -> Plus
2R 23677048..23677188 1951..2091 100 -> Plus
2R 23677249..23677347 2092..2190 100 -> Plus
2R 23677405..23677653 2191..2439 100 -> Plus
2R 23677715..23677937 2440..2662 100 -> Plus
2R 23678002..23678159 2663..2820 100 -> Plus
2R 23678218..23678488 2821..3091 100 -> Plus
2R 23678547..23680844 3092..5388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:17 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23674931..23674985 1305..1359 100 -> Plus
2R 23675107..23675205 1360..1458 100 -> Plus
2R 23675355..23675465 1459..1569 100 -> Plus
2R 23675539..23675708 1570..1739 100 -> Plus
2R 23665951..23666035 784..868 100 -> Plus
2R 23671976..23672088 869..981 100 -> Plus
2R 23674286..23674342 982..1038 100 -> Plus
2R 23674414..23674619 1039..1244 100 -> Plus
2R 23674804..23674863 1245..1304 100 -> Plus
2R 23659304..23659352 1..49 100 -> Plus
2R 23660394..23660533 50..189 100 -> Plus
2R 23665294..23665887 190..783 100 -> Plus
2R 23675778..23675988 1740..1950 100 -> Plus
2R 23677048..23677188 1951..2091 100 -> Plus
2R 23677249..23677347 2092..2190 100 -> Plus
2R 23677405..23677653 2191..2439 100 -> Plus
2R 23677715..23677937 2440..2662 100 -> Plus
2R 23678002..23678159 2663..2820 100 -> Plus
2R 23678218..23678488 2821..3091 100 -> Plus
2R 23678547..23680844 3092..5388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:17 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23674931..23674985 1305..1359 100 -> Plus
2R 23675107..23675205 1360..1458 100 -> Plus
2R 23675355..23675465 1459..1569 100 -> Plus
2R 23675539..23675708 1570..1739 100 -> Plus
2R 23665951..23666035 784..868 100 -> Plus
2R 23671976..23672088 869..981 100 -> Plus
2R 23674286..23674342 982..1038 100 -> Plus
2R 23674414..23674619 1039..1244 100 -> Plus
2R 23674804..23674863 1245..1304 100 -> Plus
2R 23659304..23659352 1..49 100 -> Plus
2R 23660394..23660533 50..189 100 -> Plus
2R 23665294..23665887 190..783 100 -> Plus
2R 23675778..23675988 1740..1950 100 -> Plus
2R 23677048..23677188 1951..2091 100 -> Plus
2R 23677249..23677347 2092..2190 100 -> Plus
2R 23677405..23677653 2191..2439 100 -> Plus
2R 23677715..23677937 2440..2662 100 -> Plus
2R 23678002..23678159 2663..2820 100 -> Plus
2R 23678218..23678488 2821..3091 100 -> Plus
2R 23678547..23680844 3092..5388 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:18 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564772..19564870 2092..2190 100 -> Plus
arm_2R 19564928..19565176 2191..2439 100 -> Plus
arm_2R 19559499..19559611 869..981 100 -> Plus
arm_2R 19561809..19561865 982..1038 100 -> Plus
arm_2R 19561937..19562142 1039..1244 100 -> Plus
arm_2R 19562327..19562386 1245..1304 100 -> Plus
arm_2R 19562454..19562508 1305..1359 100 -> Plus
arm_2R 19562630..19562728 1360..1458 100 -> Plus
arm_2R 19562878..19562988 1459..1569 100 -> Plus
arm_2R 19563062..19563231 1570..1739 100 -> Plus
arm_2R 19546827..19546875 1..49 100 -> Plus
arm_2R 19547917..19548056 50..189 100 -> Plus
arm_2R 19552817..19553410 190..783 100 -> Plus
arm_2R 19553474..19553558 784..868 100 -> Plus
arm_2R 19565238..19565460 2440..2662 100 -> Plus
arm_2R 19563301..19563511 1740..1950 100 -> Plus
arm_2R 19564571..19564711 1951..2091 100 -> Plus
arm_2R 19565525..19565682 2663..2820 100 -> Plus
arm_2R 19565741..19566011 2821..3091 100 -> Plus
arm_2R 19566070..19568367 3092..5388 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:34:33 Download gff for RE07805.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23660521..23660569 1..49 100 -> Plus
2R 23661611..23661750 50..189 100 -> Plus
2R 23678932..23679154 2440..2662 100 -> Plus
2R 23679219..23679376 2663..2820 100 -> Plus
2R 23679435..23679705 2821..3091 100 -> Plus
2R 23679764..23682061 3092..5388 99   Plus
2R 23666511..23667104 190..783 100 -> Plus
2R 23667168..23667252 784..868 100 -> Plus
2R 23673193..23673305 869..981 100 -> Plus
2R 23675503..23675559 982..1038 100 -> Plus
2R 23675631..23675836 1039..1244 100 -> Plus
2R 23676021..23676080 1245..1304 100 -> Plus
2R 23676148..23676202 1305..1359 100 -> Plus
2R 23676324..23676422 1360..1458 100 -> Plus
2R 23676572..23676682 1459..1569 100 -> Plus
2R 23676756..23676925 1570..1739 100 -> Plus
2R 23676995..23677205 1740..1950 100 -> Plus
2R 23678265..23678405 1951..2091 100 -> Plus
2R 23678466..23678564 2092..2190 100 -> Plus
2R 23678622..23678870 2191..2439 100 -> Plus

RE07805.pep Sequence

Translation from 516 to 3233

> RE07805.pep
MGCSPSTLPPAPSAGQTGERGSLPLDASEKDESRLFCIKLRRSRLRRCSC
GGVTLQPPSDGNGSTAGDNLCGQVLLNPLQTKSEADYEKLSTGKKDSIVT
VAALGNFTHSVVRRATGSTGTSGTSSSGGNSRPGHRKSSLALALTPEDEP
MDVYQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDV
TLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHG
HHLTTIIAVCKKSFFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQIL
HSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLLNMR
LDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV
VPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD
VRSIASDGLRRTSLAKLTSLPLEAPITKENCSADEARLIDKVLEFLKREG
LYSPQMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTA
AIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRF
DVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQL
TNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLT
VLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRH
FEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQF
CIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYII
QDMMHAWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGK
MANSK*

RE07805.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13070-PA 926 GF13070-PA 1..926 1..905 4364 93.1 Plus
Dana\GF19605-PA 999 GF19605-PA 594..886 566..863 482 36 Plus
Dana\GF23391-PA 606 GF23391-PA 94..444 505..854 411 30.4 Plus
Dana\GF20888-PA 889 GF20888-PA 4..261 596..866 362 34.7 Plus
Dana\GF17478-PA 1158 GF17478-PA 710..957 594..849 261 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22873-PA 905 GG22873-PA 1..905 1..905 4880 99.8 Plus
Dere\GG18654-PA 662 GG18654-PA 259..552 566..861 483 36 Plus
Dere\GG10295-PA 601 GG10295-PA 96..456 505..867 410 29.9 Plus
Dere\GG19538-PA 984 GG19538-PA 70..358 589..878 367 33 Plus
Dere\GG21262-PA 1131 GG21262-PA 695..942 594..849 260 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20665-PA 921 GH20665-PA 1..921 1..905 4127 87 Plus
Dgri\GH24693-PA 811 GH24693-PA 418..710 566..863 484 36 Plus
Dgri\GH13071-PA 517 GH13071-PA 108..394 557..854 417 33.9 Plus
Dgri\GH24569-PA 971 GH24569-PA 59..323 589..866 375 34.9 Plus
Dgri\GH14135-PA 1078 GH14135-PA 634..881 594..849 254 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PE 905 CG45019-PE 1..905 1..905 4659 100 Plus
Pde8-PK 914 CG45019-PK 1..914 1..905 4639 99 Plus
Pde8-PI 914 CG45019-PI 1..914 1..905 4639 99 Plus
Pde8-PN 949 CG45019-PN 1..914 1..905 4639 99 Plus
Pde8-PA 914 CG45019-PA 1..914 1..905 4639 99 Plus
Pde8-PD 805 CG45019-PD 1..805 111..905 4038 98.3 Plus
Pde8-PB 904 CG45019-PB 11..904 2..905 4036 88.5 Plus
Pde8-PO 1050 CG45019-PO 145..1050 13..905 3861 85.8 Plus
Pde8-PC 400 CG45019-PC 1..400 506..905 2074 100 Plus
dnc-PL 521 CG32498-PL 118..411 566..861 469 35.2 Plus
dnc-PP 642 CG32498-PP 239..532 566..861 469 35.2 Plus
dnc-PE 642 CG32498-PE 239..532 566..861 469 35.2 Plus
dnc-PF 662 CG32498-PF 259..552 566..861 469 35.2 Plus
dnc-PA 701 CG32498-PA 298..591 566..861 469 35.2 Plus
dnc-PR 703 CG32498-PR 300..593 566..861 469 35.2 Plus
dnc-PQ 703 CG32498-PQ 300..593 566..861 469 35.2 Plus
dnc-PU 715 CG32498-PU 312..605 566..861 469 35.2 Plus
dnc-PT 715 CG32498-PT 312..605 566..861 469 35.2 Plus
dnc-PG 814 CG32498-PG 411..704 566..861 469 35.2 Plus
dnc-PN 983 CG32498-PN 580..873 566..861 469 35.2 Plus
dnc-PC 1057 CG32498-PC 654..947 566..861 469 35.2 Plus
dnc-PD 1068 CG32498-PD 665..958 566..861 469 35.2 Plus
dnc-PJ 1070 CG32498-PJ 667..960 566..861 469 35.2 Plus
dnc-PI 1070 CG32498-PI 667..960 566..861 469 35.2 Plus
dnc-PS 1209 CG32498-PS 806..1099 566..861 469 35.2 Plus
dnc-PB 1209 CG32498-PB 806..1099 566..861 469 35.2 Plus
Pde1c-PG 834 CG44007-PG 308..689 472..863 408 27.9 Plus
Pde1c-PB 834 CG44007-PB 308..689 472..863 408 27.9 Plus
Pde1c-PL 855 CG44007-PL 329..710 472..863 408 27.9 Plus
Pde1c-PD 1137 CG44007-PD 611..992 472..863 408 27.9 Plus
Pde1c-PJ 1158 CG44007-PJ 632..1013 472..863 408 27.9 Plus
Pde1c-PE 1173 CG44007-PE 647..1028 472..863 408 27.9 Plus
Pde1c-PH 952 CG44007-PH 428..807 486..863 404 28.3 Plus
Pde1c-PC 605 CG44007-PC 101..460 505..863 403 28.8 Plus
Pde1c-PK 1009 CG44007-PK 505..864 505..863 403 28.8 Plus
Pde9-PB 1526 CG42276-PB 699..955 589..856 355 34.7 Plus
Pde9-PF 1526 CG42276-PF 699..955 589..856 355 34.7 Plus
Pde9-PE 1526 CG42276-PE 699..955 589..856 355 34.7 Plus
Pde9-PD 1623 CG42276-PD 699..955 589..856 355 34.7 Plus
Pde6-PD 1118 CG8279-PD 682..929 594..849 260 30 Plus
Pde6-PB 1118 CG8279-PB 682..929 594..849 260 30 Plus
Pde6-PC 1124 CG8279-PC 682..929 594..849 260 30 Plus
Pde11-PE 1117 CG34341-PE 780..1056 594..877 230 26.6 Plus
Pde11-PD 1161 CG34341-PD 824..1100 594..877 230 26.6 Plus
Pde11-PG 1407 CG34341-PG 780..1056 594..877 230 26.6 Plus
Pde11-PC 1407 CG34341-PC 780..1056 594..877 230 26.6 Plus
Pde11-PF 1451 CG34341-PF 824..1100 594..877 230 26.6 Plus
Pde11-PB 1451 CG34341-PB 824..1100 594..877 230 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19028-PA 952 GI19028-PA 1..950 1..904 4052 84.6 Plus
Dmoj\GI17690-PA 572 GI17690-PA 159..445 557..854 411 33.9 Plus
Dmoj\GI11066-PA 1039 GI11066-PA 66..336 589..872 369 34.5 Plus
Dmoj\GI10668-PA 1116 GI10668-PA 681..928 594..849 259 29.9 Plus
Dmoj\GI17200-PA 1241 GI17200-PA 616..901 594..887 237 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16875-PA 1333 GL16875-PA 581..1333 153..905 3895 96 Plus
Dper\GL15274-PA 589 GL15274-PA 147..445 538..854 420 32.8 Plus
Dper\GL19963-PA 342 GL19963-PA 2..228 633..861 389 37.6 Plus
Dper\GL22965-PA 1036 GL22965-PA 105..393 589..878 368 33 Plus
Dper\GL16875-PA 1333 GL16875-PA 1..137 1..117 354 66.7 Plus
Dper\GL14120-PA 151 GL14120-PA 43..138 33..118 291 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18863-PB 928 GA18863-PB 1..928 1..905 4335 90.8 Plus
Dpse\GA18863-PC 918 GA18863-PC 134..918 130..905 3991 94.9 Plus
Dpse\GA18863-PD 400 GA18863-PD 1..400 506..905 2061 95.2 Plus
Dpse\GA28567-PA 624 GA28567-PA 220..513 566..861 480 35.5 Plus
Dpse\GA13368-PA 538 GA13368-PA 96..394 538..854 417 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16033-PA 914 GM16033-PA 1..914 1..905 4861 98.9 Plus
Dsec\GM19267-PA 1204 GM19267-PA 801..1093 566..863 491 36 Plus
Dsec\GM10946-PA 605 GM10946-PA 101..461 505..867 409 29.9 Plus
Dsec\GM11531-PA 968 GM11531-PA 70..358 589..878 367 33 Plus
Dsec\GM17084-PA 1366 GM17084-PA 735..1011 594..877 233 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11781-PA 840 GD11781-PA 530..840 595..905 1712 99.4 Plus
Dsim\GD11781-PA 840 GD11781-PA 414..550 147..284 601 83.3 Plus
Dsim\GD16638-PA 862 GD16638-PA 553..847 566..865 495 36.2 Plus
Dsim\GD22155-PA 603 GD22155-PA 99..459 505..867 408 29.9 Plus
Dsim\GD20415-PA 1143 GD20415-PA 707..954 594..849 260 29.9 Plus
Dsim\GD21829-PA 1366 GD21829-PA 737..1013 594..877 233 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19994-PA 956 GJ19994-PA 1..956 1..905 4084 85 Plus
Dvir\GJ15306-PA 649 GJ15306-PA 251..543 566..863 488 36.7 Plus
Dvir\GJ17476-PA 513 GJ17476-PA 108..394 557..854 415 34.2 Plus
Dvir\GJ16925-PA 948 GJ16925-PA 60..348 589..878 369 32.8 Plus
Dvir\GJ23019-PA 893 GJ23019-PA 460..707 594..849 257 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23066-PA 924 GK23066-PA 1..924 1..905 4228 91.1 Plus
Dwil\GK10356-PA 1013 GK10356-PA 621..913 566..863 487 36 Plus
Dwil\GK14971-PA 593 GK14971-PA 140..438 538..854 422 34.1 Plus
Dwil\GK10275-PA 1547 GK10275-PA 709..997 589..878 373 33.3 Plus
Dwil\GK11355-PA 1127 GK11355-PA 694..941 594..849 259 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14311-PA 906 GE14311-PA 1..906 1..905 4876 99.9 Plus
Dyak\GE16298-PA 1201 GE16298-PA 798..1090 566..863 490 36 Plus
Dyak\GE12665-PA 615 GE12665-PA 106..466 505..867 410 29.9 Plus
Dyak\GE26445-PA 1149 GE26445-PA 713..960 594..849 261 30.4 Plus
Dyak\GE12727-PA 934 GE12727-PA 295..571 594..877 236 27 Plus

RE07805.hyp Sequence

Translation from 516 to 3233

> RE07805.hyp
MGCSPSTLPPAPSAGQTGERGSLPLDASEKDESRLFCIKLRRSRLRRCSC
GGVTLQPPSDGNGSTAGDNLCGQVLLNPLQTKSEADYEKLSTGKKDSIVT
VAALGNFTHSVVRRATGSTGTSGTSSSGGNSRPGHRKSSLALALTPEDEP
MDVYQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDV
TLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHG
HHLTTIIAVCKKSFFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQIL
HSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLLNMR
LDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV
VPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD
VRSIASDGLRRTSLAKLTSLPLEAPITKENCSADEARLIDKVLEFLKREG
LYSPQMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTA
AIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRF
DVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQL
TNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLT
VLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRH
FEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQF
CIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYII
QDMMHAWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGK
MANSK*

RE07805.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PE 905 CG45019-PE 1..905 1..905 4659 100 Plus
Pde8-PK 914 CG45019-PK 1..914 1..905 4639 99 Plus
Pde8-PI 914 CG45019-PI 1..914 1..905 4639 99 Plus
Pde8-PN 949 CG45019-PN 1..914 1..905 4639 99 Plus
Pde8-PA 914 CG45019-PA 1..914 1..905 4639 99 Plus