BDGP Sequence Production Resources |
Search the DGRC for RE07818
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 78 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cni-RA |
Protein status: | RE07818.pep: gold |
Sequenced Size: | 824 |
Gene | Date | Evidence |
---|---|---|
CG5855 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5855 | 2004-01-31 | Blastp of sequenced clone |
cni | 2008-04-29 | Release 5.5 accounting |
cni | 2008-08-15 | Release 5.9 accounting |
cni | 2008-12-18 | 5.12 accounting |
824 bp (824 high quality bases) assembled on 2004-01-31
GenBank Submission: BT011529
> RE07818.complete GTCATCATCGCCGCCCTTGTAAAAAAAAAACAACACCTGGAAGACGTGCT CCAGCGATTTTACAAGATGGCCTTCAACTTCACCGCCTTCACGTACATAG TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACATA GGCAAGCTCTTGCCTGGGGATCTCAGTGTTGGCGCCAACGCATCAGCGTC GTGTATTAGTTGTCTAAACTCGGGTAGAGGACTTCCTTTTTTGGGGAAGA GTCCCCATCAACCGCGAACAATACTTCACTTGTAAATTCTAGTGTAAATC CATAAAGACATCTTGAAGCTTTGTTTTTTTCATACAATTTGTAATACTTT TCTGCAGTAAGAGATTGTAACATGTTTTTATTTTGATTATTTTTTGCATA TCGCATCTTTGGTGTAGTTGGATTTTAAGCATTAAATAAAAGTCAAATCA ATGTAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cni-RA | 991 | cni-RA | 40..849 | 1..810 | 4050 | 100 | Plus |
cni.b | 829 | cni.b | 53..829 | 34..810 | 3885 | 100 | Plus |
cni-RB | 1031 | cni-RB | 113..889 | 34..810 | 3885 | 100 | Plus |
cni.b | 829 | cni.b | 7..39 | 1..33 | 165 | 100 | Plus |
cni-RB | 1031 | cni-RB | 13..45 | 1..33 | 165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 16308458..16308793 | 808..473 | 1680 | 100 | Minus |
chr2L | 23010047 | chr2L | 16309303..16309485 | 216..34 | 915 | 100 | Minus |
chr2L | 23010047 | chr2L | 16308862..16309006 | 473..329 | 725 | 100 | Minus |
chr2L | 23010047 | chr2L | 16309129..16309242 | 329..216 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 16309594..16309931 | 810..473 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 16310441..16310623 | 216..34 | 915 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 473..329 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 329..216 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 16309594..16309931 | 810..473 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 16310441..16310623 | 216..34 | 915 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 473..329 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 329..216 | 570 | 100 | Minus |
2L | 23513712 | 2L | 16310691..16310723 | 33..1 | 165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16308458..16308792 | 474..808 | 100 | <- | Minus |
chr2L | 16308862..16309005 | 330..473 | 100 | <- | Minus |
chr2L | 16309129..16309241 | 217..329 | 100 | <- | Minus |
chr2L | 16309303..16309485 | 34..216 | 100 | <- | Minus |
chr2L | 16309553..16309585 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RB | 1..435 | 67..501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RB | 1..435 | 67..501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 1..435 | 67..501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RB | 1..435 | 67..501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 1..435 | 67..501 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 14..821 | 1..808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 14..821 | 1..808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 4..811 | 1..808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 14..821 | 1..808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cni-RA | 4..811 | 1..808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16310267..16310379 | 217..329 | 100 | <- | Minus |
2L | 16310441..16310623 | 34..216 | 100 | <- | Minus |
2L | 16310691..16310723 | 1..33 | 100 | Minus | |
2L | 16309596..16309930 | 474..808 | 100 | <- | Minus |
2L | 16310000..16310143 | 330..473 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16310267..16310379 | 217..329 | 100 | <- | Minus |
2L | 16310441..16310623 | 34..216 | 100 | <- | Minus |
2L | 16310691..16310723 | 1..33 | 100 | Minus | |
2L | 16309596..16309930 | 474..808 | 100 | <- | Minus |
2L | 16310000..16310143 | 330..473 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16310267..16310379 | 217..329 | 100 | <- | Minus |
2L | 16310441..16310623 | 34..216 | 100 | <- | Minus |
2L | 16310691..16310723 | 1..33 | 100 | Minus | |
2L | 16309596..16309930 | 474..808 | 100 | <- | Minus |
2L | 16310000..16310143 | 330..473 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16310441..16310623 | 34..216 | 100 | <- | Minus |
arm_2L | 16310691..16310723 | 1..33 | 100 | Minus | |
arm_2L | 16310267..16310379 | 217..329 | 100 | <- | Minus |
arm_2L | 16309596..16309930 | 474..808 | 100 | <- | Minus |
arm_2L | 16310000..16310143 | 330..473 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16309596..16309930 | 474..808 | 100 | <- | Minus |
2L | 16310000..16310143 | 330..473 | 100 | <- | Minus |
2L | 16310267..16310379 | 217..329 | 100 | <- | Minus |
2L | 16310441..16310623 | 34..216 | 100 | <- | Minus |
2L | 16310691..16310723 | 1..33 | 100 | Minus |
Translation from 0 to 500
> RE07818.hyp VIIAALVKKKQHLEDVLQRFYKMAFNFTAFTYIVALIGDAFLIFFAIFHV IAFDELKTDYKNPIDQCNSLNPLVLPEYLLHIFLNLLFLFCGEWFSLCIN IPLIAYHIWRYKNRPVMSGPGLYDPTTVLKTDTLYRNMREGWIKLAVYLI SFFYYIYGMVYSLIST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cni-PC | 144 | CG5855-PC | 1..144 | 23..166 | 775 | 100 | Plus |
cni-PB | 144 | CG5855-PB | 1..144 | 23..166 | 775 | 100 | Plus |
cni-PA | 144 | CG5855-PA | 1..144 | 23..166 | 775 | 100 | Plus |
cnir-PA | 157 | CG17262-PA | 8..140 | 31..164 | 169 | 28.7 | Plus |
Translation from 66 to 500
> RE07818.pep MAFNFTAFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNP LVLPEYLLHIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGPGL YDPTTVLKTDTLYRNMREGWIKLAVYLISFFYYIYGMVYSLIST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15325-PA | 144 | GF15325-PA | 1..144 | 1..144 | 747 | 99.3 | Plus |
Dana\GF22791-PA | 205 | GF22791-PA | 1..52 | 1..52 | 266 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24173-PA | 144 | GG24173-PA | 1..144 | 1..144 | 742 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11430-PA | 144 | GH11430-PA | 1..144 | 1..144 | 696 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cni-PC | 144 | CG5855-PC | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PB | 144 | CG5855-PB | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PA | 144 | CG5855-PA | 1..144 | 1..144 | 775 | 100 | Plus |
cnir-PA | 157 | CG17262-PA | 8..140 | 9..142 | 169 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14694-PA | 144 | GI14694-PA | 1..144 | 1..144 | 668 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14087-PA | 144 | GL14087-PA | 1..144 | 1..144 | 724 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19182-PA | 144 | GA19182-PA | 1..144 | 1..144 | 724 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17911-PA | 144 | GM17911-PA | 1..144 | 1..144 | 739 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21921-PA | 144 | GD21921-PA | 1..144 | 1..144 | 747 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17163-PA | 144 | GJ17163-PA | 1..144 | 1..144 | 668 | 95.8 | Plus |
Dvir\GJ10862-PA | 157 | GJ10862-PA | 32..141 | 33..143 | 137 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23716-PA | 144 | GK23716-PA | 1..144 | 1..144 | 735 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19367-PA | 144 | GE19367-PA | 1..144 | 1..144 | 742 | 98.6 | Plus |