BDGP Sequence Production Resources |
Search the DGRC for RE07882
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 78 |
Well: | 82 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Osi18-RA |
Protein status: | RE07882.pep: gold |
Preliminary Size: | 1448 |
Sequenced Size: | 1284 |
Gene | Date | Evidence |
---|---|---|
CG1169 | 2001-12-14 | Blastp of sequenced clone |
CG1169 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1169 | 2003-01-01 | Sim4 clustering to Release 3 |
Osi18 | 2008-04-29 | Release 5.5 accounting |
Osi18 | 2008-08-15 | Release 5.9 accounting |
Osi18 | 2008-12-18 | 5.12 accounting |
1284 bp (1284 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070982
> RE07882.complete GCATAACCCGCTGAGTGGCCAACGCGTGCGCACCACCAAACCACCTGACC ACCGGACCATCGAACCAGAGTGAGAGTTGAGGACTAACCGTCGTCGAAAG GATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCCTTGCGGCGCTGTCCA CCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCGCCCCAGTCCGCCACG CAACTAGCCCTGGACATGTACCATGGCTGCCTTAAGGACCTCAGTGTTTC CTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACTCTGCCCTCCGGCAGC CGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTCCGTACCGCGGAGAAG GTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCTCTTCGACGACATCGA CAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGGCTCCGGAGTACTTCC GCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTCCTCATGTCGAATCCG CTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGCTAACGAAGGACGTGG CATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGGGCCTGAAACTGAAGA CCACTGTGCTGGTGCCACTGGCCTTGGGACTCATTGCCCTAAAGACCTGG AAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCTGTCTGGAGCCTTGGT TATTTTCAAGATTGCCAAGCCCAAGATTGTCAACTACGAGGTGGTGCACT ATCCCCATCACGTGGATCATGTGGTGCCGCATCACATTGAGCACGTGGTG CCCCACCACATCGAGCACGTGGTGCCCCACCACATCGAGCACATAGTGCC GCATCACATCGATCATCATCTGGAGCACCACATCGATCACCACGTGGATC TGCCCGTGGAGCACATCGAGCACCTGGAGCACCCATCGCCCGCCTGGGAT CCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCAGGATGCCCAGGACTT GGCCTACGCGGGTCAGAAGTGAACATGGGTCTAGAGACCAAAACCCCCCT TACGAAATTCGGCCAAACTGTAACCTTATTTATTTCGTTCTAAGTTAAGT AGCTGAAACACACCGCTCTCGGCGTATTGTTTATTTATTTATTTATTGAG AAGTGTACAAAGCAAAGACCACAAAAAGAACCAAACCCCCAAGGCGTTTT AAAAAGGTACTAAGTGGGAATTAGCTCTGGTGTCCCTTTGTGTAAATATT ACTGCAATAAAAACATGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2156759..2157485 | 542..1268 | 3635 | 100 | Plus |
chr3R | 27901430 | chr3R | 2155926..2156469 | 1..544 | 2705 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 2156997..2157079 | 756..838 | 250 | 86.7 | Plus |
chr3R | 27901430 | chr3R | 2156973..2157055 | 780..862 | 250 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 6331083..6331814 | 542..1273 | 3660 | 100 | Plus |
3R | 32079331 | 3R | 6330250..6330793 | 1..544 | 2720 | 100 | Plus |
3R | 32079331 | 3R | 6331297..6331379 | 780..862 | 250 | 86.7 | Plus |
3R | 32079331 | 3R | 6331321..6331403 | 756..838 | 250 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 224..323 | 1127..1223 | 115 | 61.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2155926..2156468 | 1..543 | 99 | -> | Plus |
chr3R | 2156761..2157485 | 544..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..921 | 102..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..921 | 102..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..921 | 102..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..921 | 102..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..921 | 102..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..1268 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..1268 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 3..1270 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 1..1268 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi18-RA | 3..1270 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6330250..6330792 | 1..543 | 100 | -> | Plus |
3R | 6331085..6331809 | 544..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6330250..6330792 | 1..543 | 100 | -> | Plus |
3R | 6331085..6331809 | 544..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6330250..6330792 | 1..543 | 100 | -> | Plus |
3R | 6331085..6331809 | 544..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2155972..2156514 | 1..543 | 100 | -> | Plus |
arm_3R | 2156807..2157531 | 544..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6071081..6071623 | 1..543 | 100 | -> | Plus |
3R | 6071916..6072640 | 544..1268 | 100 | Plus |
Translation from 101 to 1021
> RE07882.hyp MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL AYAGQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi18-PA | 306 | CG1169-PA | 1..306 | 1..306 | 1609 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 6..206 | 7..220 | 213 | 29 | Plus |
Osi7-PA | 288 | CG1153-PA | 13..235 | 9..220 | 190 | 29.5 | Plus |
Osi19-PB | 257 | CG15189-PB | 7..225 | 8..227 | 178 | 25.2 | Plus |
Osi19-PA | 266 | CG15189-PA | 7..234 | 8..227 | 169 | 24.3 | Plus |
Translation from 101 to 1021
> RE07882.pep MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL AYAGQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16391-PA | 307 | GF16391-PA | 1..307 | 1..306 | 1357 | 94.1 | Plus |
Dana\GF16381-PA | 232 | GF16381-PA | 28..206 | 36..220 | 199 | 27.7 | Plus |
Dana\GF16392-PA | 268 | GF16392-PA | 47..221 | 48..206 | 146 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13291-PA | 306 | GG13291-PA | 1..306 | 1..306 | 1550 | 97.7 | Plus |
Dere\GG13161-PA | 233 | GG13161-PA | 28..206 | 36..220 | 203 | 28.2 | Plus |
Dere\GG13302-PA | 266 | GG13302-PA | 45..219 | 48..206 | 151 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14035-PA | 318 | GH14035-PA | 7..316 | 8..306 | 1099 | 77.2 | Plus |
Dgri\GH14025-PA | 231 | GH14025-PA | 28..206 | 36..220 | 206 | 29.2 | Plus |
Dgri\GH14036-PA | 262 | GH14036-PA | 7..216 | 8..206 | 159 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi18-PA | 306 | CG1169-PA | 1..306 | 1..306 | 1609 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 6..206 | 7..220 | 213 | 29 | Plus |
Osi7-PA | 288 | CG1153-PA | 13..235 | 9..220 | 190 | 29.5 | Plus |
Osi19-PB | 257 | CG15189-PB | 7..225 | 8..227 | 178 | 25.2 | Plus |
Osi19-PA | 266 | CG15189-PA | 7..234 | 8..227 | 169 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24408-PA | 309 | GI24408-PA | 31..307 | 31..306 | 1065 | 81.4 | Plus |
Dmoj\GI24397-PA | 232 | GI24397-PA | 28..206 | 36..220 | 209 | 29.7 | Plus |
Dmoj\GI24409-PA | 262 | GI24409-PA | 43..218 | 48..211 | 157 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24072-PA | 368 | GL24072-PA | 1..313 | 1..306 | 1124 | 83.4 | Plus |
Dper\GL24061-PA | 232 | GL24061-PA | 28..206 | 36..220 | 209 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11143-PA | 313 | GA11143-PA | 1..313 | 1..306 | 1138 | 84 | Plus |
Dpse\GA13834-PA | 232 | GA13834-PA | 28..206 | 36..220 | 209 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10882-PA | 306 | GM10882-PA | 1..306 | 1..306 | 1587 | 99 | Plus |
Dsec\GM10870-PA | 233 | GM10870-PA | 28..206 | 36..220 | 203 | 28.2 | Plus |
Dsec\GM10883-PA | 266 | GM10883-PA | 45..219 | 48..206 | 156 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19861-PA | 298 | GD19861-PA | 1..298 | 1..306 | 1266 | 97.1 | Plus |
Dsim\GD19850-PA | 233 | GD19850-PA | 28..206 | 36..220 | 203 | 28.2 | Plus |
Dsim\GD19862-PA | 266 | GD19862-PA | 45..219 | 48..206 | 155 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14267-PA | 309 | GJ14267-PA | 24..307 | 22..306 | 973 | 79.5 | Plus |
Dvir\GJ14255-PA | 231 | GJ14255-PA | 28..206 | 36..220 | 206 | 29.2 | Plus |
Dvir\GJ14268-PA | 266 | GJ14268-PA | 13..220 | 12..206 | 156 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13051-PA | 302 | GK13051-PA | 7..300 | 8..306 | 1014 | 79.2 | Plus |
Dwil\GK13052-PA | 266 | GK13052-PA | 19..216 | 23..206 | 155 | 24.6 | Plus |
Dwil\GK24013-PA | 108 | GK24013-PA | 4..83 | 144..220 | 141 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10206-PA | 306 | GE10206-PA | 1..306 | 1..306 | 1556 | 97.4 | Plus |
Dyak\GE10192-PA | 233 | GE10192-PA | 28..206 | 36..220 | 203 | 28.2 | Plus |
Dyak\GE10207-PA | 266 | GE10207-PA | 45..219 | 48..206 | 153 | 24.3 | Plus |