Clone RE07882 Report

Search the DGRC for RE07882

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:78
Well:82
Vector:pFlc-1
Associated Gene/TranscriptOsi18-RA
Protein status:RE07882.pep: gold
Preliminary Size:1448
Sequenced Size:1284

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1169 2001-12-14 Blastp of sequenced clone
CG1169 2002-01-01 Sim4 clustering to Release 2
CG1169 2003-01-01 Sim4 clustering to Release 3
Osi18 2008-04-29 Release 5.5 accounting
Osi18 2008-08-15 Release 5.9 accounting
Osi18 2008-12-18 5.12 accounting

Clone Sequence Records

RE07882.complete Sequence

1284 bp (1284 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070982

> RE07882.complete
GCATAACCCGCTGAGTGGCCAACGCGTGCGCACCACCAAACCACCTGACC
ACCGGACCATCGAACCAGAGTGAGAGTTGAGGACTAACCGTCGTCGAAAG
GATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCCTTGCGGCGCTGTCCA
CCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCGCCCCAGTCCGCCACG
CAACTAGCCCTGGACATGTACCATGGCTGCCTTAAGGACCTCAGTGTTTC
CTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACTCTGCCCTCCGGCAGC
CGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTCCGTACCGCGGAGAAG
GTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCTCTTCGACGACATCGA
CAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGGCTCCGGAGTACTTCC
GCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTCCTCATGTCGAATCCG
CTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGCTAACGAAGGACGTGG
CATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGGGCCTGAAACTGAAGA
CCACTGTGCTGGTGCCACTGGCCTTGGGACTCATTGCCCTAAAGACCTGG
AAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCTGTCTGGAGCCTTGGT
TATTTTCAAGATTGCCAAGCCCAAGATTGTCAACTACGAGGTGGTGCACT
ATCCCCATCACGTGGATCATGTGGTGCCGCATCACATTGAGCACGTGGTG
CCCCACCACATCGAGCACGTGGTGCCCCACCACATCGAGCACATAGTGCC
GCATCACATCGATCATCATCTGGAGCACCACATCGATCACCACGTGGATC
TGCCCGTGGAGCACATCGAGCACCTGGAGCACCCATCGCCCGCCTGGGAT
CCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCAGGATGCCCAGGACTT
GGCCTACGCGGGTCAGAAGTGAACATGGGTCTAGAGACCAAAACCCCCCT
TACGAAATTCGGCCAAACTGTAACCTTATTTATTTCGTTCTAAGTTAAGT
AGCTGAAACACACCGCTCTCGGCGTATTGTTTATTTATTTATTTATTGAG
AAGTGTACAAAGCAAAGACCACAAAAAGAACCAAACCCCCAAGGCGTTTT
AAAAAGGTACTAAGTGGGAATTAGCTCTGGTGTCCCTTTGTGTAAATATT
ACTGCAATAAAAACATGCAAAAAAAAAAAAAAAA

RE07882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1456 Osi18-RA 139..1411 1..1273 6365 100 Plus
Osi18.a 1600 Osi18.a 318..1590 1..1273 6365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2156759..2157485 542..1268 3635 100 Plus
chr3R 27901430 chr3R 2155926..2156469 1..544 2705 99.8 Plus
chr3R 27901430 chr3R 2156997..2157079 756..838 250 86.7 Plus
chr3R 27901430 chr3R 2156973..2157055 780..862 250 86.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331814 542..1273 3660 100 Plus
3R 32079331 3R 6330250..6330793 1..544 2720 100 Plus
3R 32079331 3R 6331297..6331379 780..862 250 86.7 Plus
3R 32079331 3R 6331321..6331403 756..838 250 86.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6071914..6072645 542..1273 3660 100 Plus
3R 31820162 3R 6071081..6071624 1..544 2720 100 Plus
Blast to na_te.dros performed 2019-03-16 04:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 224..323 1127..1223 115 61.8 Plus

RE07882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:35:31 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2155926..2156468 1..543 99 -> Plus
chr3R 2156761..2157485 544..1268 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:50 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 102..1022 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:51 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 102..1022 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:23 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 102..1022 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:26 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 102..1022 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:44:04 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 102..1022 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:47 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..1268 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:51 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..1268 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:23 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 3..1270 1..1268 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:27:26 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..1268 1..1268 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:44:04 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 3..1270 1..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:31 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6330250..6330792 1..543 100 -> Plus
3R 6331085..6331809 544..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:31 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6330250..6330792 1..543 100 -> Plus
3R 6331085..6331809 544..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:31 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6330250..6330792 1..543 100 -> Plus
3R 6331085..6331809 544..1268 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:23 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2155972..2156514 1..543 100 -> Plus
arm_3R 2156807..2157531 544..1268 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:15 Download gff for RE07882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6071081..6071623 1..543 100 -> Plus
3R 6071916..6072640 544..1268 100   Plus

RE07882.hyp Sequence

Translation from 101 to 1021

> RE07882.hyp
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQK*

RE07882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-PA 306 CG1169-PA 1..306 1..306 1609 100 Plus
Osi9-PA 233 CG15592-PA 6..206 7..220 213 29 Plus
Osi7-PA 288 CG1153-PA 13..235 9..220 190 29.5 Plus
Osi19-PB 257 CG15189-PB 7..225 8..227 178 25.2 Plus
Osi19-PA 266 CG15189-PA 7..234 8..227 169 24.3 Plus

RE07882.pep Sequence

Translation from 101 to 1021

> RE07882.pep
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQK*

RE07882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16391-PA 307 GF16391-PA 1..307 1..306 1357 94.1 Plus
Dana\GF16381-PA 232 GF16381-PA 28..206 36..220 199 27.7 Plus
Dana\GF16392-PA 268 GF16392-PA 47..221 48..206 146 23.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13291-PA 306 GG13291-PA 1..306 1..306 1550 97.7 Plus
Dere\GG13161-PA 233 GG13161-PA 28..206 36..220 203 28.2 Plus
Dere\GG13302-PA 266 GG13302-PA 45..219 48..206 151 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14035-PA 318 GH14035-PA 7..316 8..306 1099 77.2 Plus
Dgri\GH14025-PA 231 GH14025-PA 28..206 36..220 206 29.2 Plus
Dgri\GH14036-PA 262 GH14036-PA 7..216 8..206 159 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-PA 306 CG1169-PA 1..306 1..306 1609 100 Plus
Osi9-PA 233 CG15592-PA 6..206 7..220 213 29 Plus
Osi7-PA 288 CG1153-PA 13..235 9..220 190 29.5 Plus
Osi19-PB 257 CG15189-PB 7..225 8..227 178 25.2 Plus
Osi19-PA 266 CG15189-PA 7..234 8..227 169 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24408-PA 309 GI24408-PA 31..307 31..306 1065 81.4 Plus
Dmoj\GI24397-PA 232 GI24397-PA 28..206 36..220 209 29.7 Plus
Dmoj\GI24409-PA 262 GI24409-PA 43..218 48..211 157 26.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24072-PA 368 GL24072-PA 1..313 1..306 1124 83.4 Plus
Dper\GL24061-PA 232 GL24061-PA 28..206 36..220 209 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11143-PA 313 GA11143-PA 1..313 1..306 1138 84 Plus
Dpse\GA13834-PA 232 GA13834-PA 28..206 36..220 209 28.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10882-PA 306 GM10882-PA 1..306 1..306 1587 99 Plus
Dsec\GM10870-PA 233 GM10870-PA 28..206 36..220 203 28.2 Plus
Dsec\GM10883-PA 266 GM10883-PA 45..219 48..206 156 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19861-PA 298 GD19861-PA 1..298 1..306 1266 97.1 Plus
Dsim\GD19850-PA 233 GD19850-PA 28..206 36..220 203 28.2 Plus
Dsim\GD19862-PA 266 GD19862-PA 45..219 48..206 155 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14267-PA 309 GJ14267-PA 24..307 22..306 973 79.5 Plus
Dvir\GJ14255-PA 231 GJ14255-PA 28..206 36..220 206 29.2 Plus
Dvir\GJ14268-PA 266 GJ14268-PA 13..220 12..206 156 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13051-PA 302 GK13051-PA 7..300 8..306 1014 79.2 Plus
Dwil\GK13052-PA 266 GK13052-PA 19..216 23..206 155 24.6 Plus
Dwil\GK24013-PA 108 GK24013-PA 4..83 144..220 141 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10206-PA 306 GE10206-PA 1..306 1..306 1556 97.4 Plus
Dyak\GE10192-PA 233 GE10192-PA 28..206 36..220 203 28.2 Plus
Dyak\GE10207-PA 266 GE10207-PA 45..219 48..206 153 24.3 Plus