Clone RE07960 Report

Search the DGRC for RE07960

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:79
Well:60
Vector:pFlc-1
Associated Gene/TranscriptCG32147-RA
Protein status:RE07960.pep: gold
Sequenced Size:893

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32147 2001-12-14 Blastp of sequenced clone
CG6988 2002-01-01 Sim4 clustering to Release 2
CG32147 2003-01-01 Sim4 clustering to Release 3
CG32147 2008-04-29 Release 5.5 accounting
CG32147 2008-08-15 Release 5.9 accounting
CG32147 2008-12-18 5.12 accounting

Clone Sequence Records

RE07960.complete Sequence

893 bp (893 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070984

> RE07960.complete
AGTTGGGGTGTTTGTTATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCTGAATTCCGCAA
AATATTCTTCCAATATCTGTCTTTTTAAGAATTATTTACATGTGTGCTGT
TAAGTTGTTTAAGAAATGAGTTTTATTCTTTTTAAGATACAATATTTTAT
ATTTACTTTTTATTACAATGAAACAGAGAAGCAATACAACTGCATTAATA
ATTACACAGTCTTTTTTGCGTTTACACAAAAAAAAAAAAAAAA

RE07960.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 936 CG32147-RA 35..913 1..879 4395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15133128..15133778 877..230 3070 98.5 Minus
chr3L 24539361 chr3L 15133865..15134093 229..1 1145 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143061..15143710 879..230 3250 100 Minus
3L 28110227 3L 15143797..15144025 229..1 1145 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15136161..15136810 879..230 3250 100 Minus
3L 28103327 3L 15136897..15137125 229..1 1145 100 Minus
Blast to na_te.dros performed 2019-03-15 20:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 770..884 721..835 114 61 Plus

RE07960.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:18 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15133128..15133778 230..877 98 <- Minus
chr3L 15133865..15134093 1..229 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:50:56 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:44 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:19:01 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:12 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:48 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:36 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..877 1..877 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:43 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..877 1..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:19:01 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 35..911 1..877 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:27:12 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..877 1..877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:48 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 35..911 1..877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:18 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15143063..15143710 230..877 100 <- Minus
3L 15143797..15144025 1..229 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:18 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15143063..15143710 230..877 100 <- Minus
3L 15143797..15144025 1..229 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:18 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15143063..15143710 230..877 100 <- Minus
3L 15143797..15144025 1..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:19:01 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136163..15136810 230..877 100 <- Minus
arm_3L 15136897..15137125 1..229 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:07 Download gff for RE07960.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15136163..15136810 230..877 100 <- Minus
3L 15136897..15137125 1..229 100   Minus

RE07960.hyp Sequence

Translation from 0 to 690

> RE07960.hyp
VGVFVMASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYD
LEKRLVSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHK
FRRADNCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGP
TQQPTHNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPV
DRPFSSVKTSEILFSIVEQCIQQVVAFDS*

RE07960.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 224 CG32147-PA 1..224 6..229 1169 100 Plus

RE07960.pep Sequence

Translation from 16 to 690

> RE07960.pep
MASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRL
VSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHKFRRAD
NCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGPTQQPT
HNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPVDRPFS
SVKTSEILFSIVEQCIQQVVAFDS*

RE07960.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10738-PA 225 GF10738-PA 1..222 1..221 868 74.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13680-PA 223 GG13680-PA 1..223 1..224 1120 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17032-PA 224 GH17032-PA 1..217 1..221 825 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 224 CG32147-PA 1..224 1..224 1169 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12237-PA 219 GI12237-PA 1..217 1..223 763 63.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25768-PA 223 GL25768-PA 1..218 1..221 856 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16713-PA 223 GA16713-PA 1..218 1..221 864 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24500-PA 224 GM24500-PA 1..224 1..224 1169 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12571-PA 224 GD12571-PA 1..224 1..224 1167 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11468-PA 221 GJ11468-PA 1..220 1..224 821 67 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20489-PA 219 GK20489-PA 2..216 3..219 785 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19976-PA 223 GE19976-PA 1..223 1..224 1104 92 Plus