Clone RE08107 Report

Search the DGRC for RE08107

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:81
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG33993-RA
Protein status:RE08107.pep: gold
Preliminary Size:510
Sequenced Size:2417

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13290 2002-01-01 Sim4 clustering to Release 2
CG13290 2003-01-01 Sim4 clustering to Release 3
CG13289 2003-08-11 Blastp of sequenced clone
CG33993 2008-04-29 Release 5.5 accounting
CG33993 2008-08-15 Release 5.9 accounting
CG33993 2008-12-18 5.12 accounting

Clone Sequence Records

RE08107.complete Sequence

2417 bp (2417 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010275

> RE08107.complete
AGTCGTTTGCGTTGAGTCAGCGGAAGCGAACGTCGTCGTCGGAGTAGCAG
CAGCAACATCGCAGCAGCAACATTCGTCGTGTGTGCCGCCAGTTTCGGTT
GAAAACTGCAAATGCAAAGAGACAGGTTGCCTGCCGGATTTAAGTTGCAG
CCCATTTCGTAACAGTTAAAAAGTGTGTGTGCATAGTTTAAGCCATTGCG
AAACCAGTGTTCACTAAAGTGAAAAAAAAAAATATCAAACAAACCAGCGA
CATTTGTGTCCCGAAAAAAAAACACGTAGATTAATTGATTTATGCCTGTG
ACCTTTGCACAGCACACCTGTTGCTTTCATGCCGAAAGGAGCTGGATACG
GCAGTTATATAAGATGCTTTGAATGTTTGAGGCAAGATATATGAAGTACC
AATGATCATGCAGGATATACGCCTACGCCTGGAACCACAGCACAGTAAAG
CCACATTCATATCCTCCTCCTCGGCCTCATCGTCCTCATCCCAAACAGCT
GAGACCACGCTGATTGAGACAGCTGAGAAGTCGCCAGCCAGTGAAGCAGC
TGCTGGAACAGTGACAACGACATCGCCGCAGCATTTCTTCCATCATCATC
ATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAGCCGCATCCGCATAGC
CACTCGCATCCGCATCCGCATCCGCAACTCCAGCGCCGCCCGGTGGAGCA
GCTGCATCTGCTGCATAGCCACCACGATGTCCAGGAGCTGTCCGGACAGG
AGCATCCACATCCGCAACCCGGCTCGCATCCGCATCCGCACCATCTGCGC
TCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGAAATGAATAATTGCCG
TCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCCTGACCATGGGCATTG
GACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTGATGCACAGCACCTGC
GGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATCCACTCAGACCATCTC
CGATGGCTATGTGAACGAGGCCATCTGCGAGCCGGACAAGTACGTGGCCA
GCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCCGCACTGGAGAGTGCC
ACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAGCAAAAAGTATCTGAG
AGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGTTTCCCGGCCACAGTG
CCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAGCAGGAGCTTAAGGGA
GCCGCCTGGTTTCAAGCGGGCATTCCCAGGGAAATATCCCTGGAGGCCCT
GTCCCGACAGAGTCCAGGTGCGTTTCTAGTGCGCCAGAGCAGCACAAAGC
CGGGATGTTTCGCCCTCTCGCTGCGAGTGCCACCACCTTCACCACGAGTG
GCCCACTATCTGATCCTGCGGACGCAAAGGGGCTACAAGATAAAGGGCTT
CACCAAGGAGTTCAGTTCGCTGAAGGCGCTGATCACGCACCACTCGGTGA
TGCCGGAACTGTTGCCCGTGCCGCTGACCCTGCCACGCCCACCTAGTACC
CGATCGCAACGATCGCAGGGCGCCTACGCAGGCGGAACCGGAAACGGGGG
AGCGGACTTCGAGATGTATGGCTCGCTGAACGACTTTCGCAAAATGATGG
CCGATTTGAATGTGTGACCGCTGGGCGCTCTTAATTAATTAAGTAATTAT
GTCACGTTGATTGAATTAAGCTGCCCAGCTTGTCACATTGTCCTGCGTCC
TGTGTCCTCTGTCGCGACAGGATAACAATCTGTTTAATTTGCGTAATTGG
CTGTGCTGACGACGGTTGACGTGGCTACCAATAAATAGGGTCCATGTCCA
TGTGTACTCGGGCCGGCAAAGGCCCACCTGTCCGACAGGTGCTGCAAAAA
GTGCACAAACATTTTTTATTAAAATTGATAATAAAATCAGCTACGTGGGC
GGCTGCGATGGCTGTGGTTTCGCAGGGGCGTGTTTGCATACACAAATATA
GGGAATACGCTCAAATCATTTTTGCGAAACTGATTAAAAAATGGCAAAAA
CATGCAATATGTATACGCAAACAGACATCAAGTGATTATTATTTTTCGCG
TTTTTATCAATTCTGCTCGTTTTGTACGGCTAGTGCTGAGTGGCAGATGC
ATCAGACAGACGTACTATACATATCTGAATGGGGGCAGTCGGATTAAATG
TTAATGTTTGGGTAGGGAAATCGAGGGTCGGCTGCCGGGATTTGGAGTGC
GGATGCGGAATGGGCAAAGTGGATTCTTTTTGTATTTGATGCACTCACTT
TGCGGTGCAGTGGCTAGATAGACTTATATGGGAAGTAAATGAATAACCAA
TTATATTGTAACTCTATGTATTTTGTAATAAAGTTAATGGAAAACCTTTT
CAAAAAAAAAAAAAAAA

RE08107.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2471 CG33993-RA 67..2470 1..2404 12020 100 Plus
CG33993.a 1637 CG33993.a 118..1637 874..2393 7600 100 Plus
CG33993-RB 1418 CG33993-RB 118..1418 874..2174 6505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5925632..5926589 2401..1444 4695 99.8 Minus
chr3L 24539361 chr3L 5942947..5943308 363..1 1765 99.7 Minus
chr3L 24539361 chr3L 5930000..5930353 877..539 1510 95.8 Minus
chr3L 24539361 chr3L 5927001..5927290 1164..875 1450 100 Minus
chr3L 24539361 chr3L 5926649..5926931 1446..1164 1400 99.6 Minus
chr3L 24539361 chr3L 5930447..5930626 541..362 900 100 Minus
chr3L 24539361 chr3L 6018061..6018128 1470..1537 205 86.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5933033..5933993 2404..1444 4805 100 Minus
3L 28110227 3L 5950293..5950655 363..1 1815 100 Minus
3L 28110227 3L 5937397..5937735 877..539 1695 100 Minus
3L 28110227 3L 5934405..5934694 1164..875 1450 100 Minus
3L 28110227 3L 5934053..5934335 1446..1164 1415 100 Minus
3L 28110227 3L 5937829..5938008 541..362 900 100 Minus
3L 28110227 3L 6025442..6025509 1470..1537 205 86.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5926133..5927093 2404..1444 4805 100 Minus
3L 28103327 3L 5943393..5943755 363..1 1815 100 Minus
3L 28103327 3L 5930497..5930835 877..539 1695 100 Minus
3L 28103327 3L 5927505..5927794 1164..875 1450 100 Minus
3L 28103327 3L 5927153..5927435 1446..1164 1415 100 Minus
3L 28103327 3L 5930929..5931108 541..362 900 100 Minus
3L 28103327 3L 6018542..6018609 1470..1537 205 86.7 Plus
Blast to na_te.dros performed on 2019-03-16 04:00:19 has no hits.

RE08107.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:01:34 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5926650..5926930 1165..1445 99 <- Minus
chr3L 5930447..5930624 364..541 100 <- Minus
chr3L 5927001..5927289 876..1164 100 <- Minus
chr3L 5930002..5930350 542..875 95 <- Minus
chr3L 5925632..5926587 1446..2401 99 <- Minus
chr3L 5942947..5943308 1..363 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:28:49 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 402..1667 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:19 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 402..1667 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:53 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 402..1667 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:04 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 402..1667 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:26 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 402..1667 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:28:48 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:18 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:53 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 4..2404 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:04 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:26 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 4..2404 1..2401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:34 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5933036..5933991 1446..2401 100 <- Minus
3L 5934054..5934334 1165..1445 100 <- Minus
3L 5934405..5934693 876..1164 100 <- Minus
3L 5937399..5937732 542..875 100 <- Minus
3L 5937829..5938006 364..541 100 <- Minus
3L 5950293..5950655 1..363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:34 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5933036..5933991 1446..2401 100 <- Minus
3L 5934054..5934334 1165..1445 100 <- Minus
3L 5934405..5934693 876..1164 100 <- Minus
3L 5937399..5937732 542..875 100 <- Minus
3L 5937829..5938006 364..541 100 <- Minus
3L 5950293..5950655 1..363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:34 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5933036..5933991 1446..2401 100 <- Minus
3L 5934054..5934334 1165..1445 100 <- Minus
3L 5934405..5934693 876..1164 100 <- Minus
3L 5937399..5937732 542..875 100 <- Minus
3L 5937829..5938006 364..541 100 <- Minus
3L 5950293..5950655 1..363 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:53 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5926136..5927091 1446..2401 100 <- Minus
arm_3L 5927154..5927434 1165..1445 100 <- Minus
arm_3L 5927505..5927793 876..1164 100 <- Minus
arm_3L 5930499..5930832 542..875 100 <- Minus
arm_3L 5930929..5931106 364..541 100 <- Minus
arm_3L 5943393..5943755 1..363 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:05 Download gff for RE08107.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5930499..5930832 542..875 100 <- Minus
3L 5926136..5927091 1446..2401 100 <- Minus
3L 5927154..5927434 1165..1445 100 <- Minus
3L 5927505..5927793 876..1164 100 <- Minus
3L 5930929..5931106 364..541 100 <- Minus
3L 5943393..5943755 1..363 100   Minus

RE08107.pep Sequence

Translation from 401 to 1666

> RE08107.pep
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNV*

RE08107.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23755-PA 424 GF23755-PA 1..424 1..421 1556 81.9 Plus
Dana\GF10662-PA 460 GF10662-PA 172..454 133..421 713 52.1 Plus
Dana\GF23754-PA 370 GF23754-PA 241..332 286..379 189 45.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14099-PA 426 GG14099-PA 1..426 1..421 1695 90.8 Plus
Dere\GG15304-PA 478 GG15304-PA 187..472 133..421 712 51.8 Plus
Dere\GG14098-PA 375 GG14098-PA 246..337 286..379 185 46.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16450-PA 453 GH16450-PA 1..453 1..421 1225 63.6 Plus
Dgri\GH15019-PA 503 GH15019-PA 204..499 133..421 735 52.1 Plus
Dgri\GH23743-PA 274 GH23743-PA 1..270 159..421 616 49.8 Plus
Dgri\GH16449-PA 383 GH16449-PA 247..345 277..379 182 42.3 Plus
Dgri\GH19392-PA 1708 GH19392-PA 1444..1542 286..378 162 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 421 CG33993-PA 1..421 1..421 2228 100 Plus
CG33993-PB 258 CG33993-PB 1..258 164..421 1330 100 Plus
PVRAP-PA 474 CG32406-PA 183..468 133..421 686 51.9 Plus
CG10479-PA 378 CG10479-PA 240..340 277..379 189 44.2 Plus
CG10479-PB 379 CG10479-PB 241..341 277..379 189 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16708-PA 425 GI16708-PA 1..425 3..421 1343 68.6 Plus
Dmoj\GI16674-PA 481 GI16674-PA 172..477 134..421 701 49.2 Plus
Dmoj\GI16706-PA 375 GI16706-PA 243..337 281..379 172 42 Plus
Dmoj\GI22597-PA 735 GI22597-PA 472..570 286..378 160 41.4 Plus
Dmoj\GI23987-PA 541 GI23987-PA 265..370 286..378 151 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16312-PA 426 GL16312-PA 1..426 1..421 1442 75.6 Plus
Dper\GL15534-PA 487 GL15534-PA 193..475 133..416 715 51.5 Plus
Dper\GL15532-PA 349 GL15532-PA 216..311 280..379 185 43.6 Plus
Dper\GL22225-PA 726 GL22225-PA 465..563 286..378 161 39.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23858-PA 424 GA23858-PA 1..424 3..421 1443 75.7 Plus
Dpse\GA16878-PA 487 GA16878-PA 193..475 133..416 718 51.5 Plus
Dpse\GA10339-PA 380 GA10339-PA 247..342 280..379 192 44.6 Plus
Dpse\GA27425-PA 727 GA27425-PA 466..564 286..378 161 39.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13883-PA 418 GM13883-PA 1..418 1..421 1792 91.9 Plus
Dsec\GM14737-PA 474 GM14737-PA 183..468 133..421 711 51.8 Plus
Dsec\GM13882-PA 191 GM13882-PA 1..116 1..115 271 83.6 Plus
Dsec\GM13881-PA 378 GM13881-PA 249..340 286..379 186 46.3 Plus
Dsec\GM26249-PA 722 GM26249-PA 460..558 286..378 154 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13917-PA 435 GD13917-PA 127..429 116..421 708 49.8 Plus
Dsim\GD13165-PA 228 GD13165-PA 1..155 1..158 421 85.5 Plus
Dsim\GD13165-PA 228 GD13165-PA 156..228 349..421 323 98.6 Plus
Dsim\GD13163-PA 378 GD13163-PA 249..340 286..379 186 46.3 Plus
Dsim\GD20789-PA 714 GD20789-PA 452..550 286..378 154 39.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12450-PA 419 GJ12450-PA 1..419 1..421 1307 70.6 Plus
Dvir\GJ12926-PA 494 GJ12926-PA 186..490 133..421 713 50.5 Plus
Dvir\GJ12447-PA 394 GJ12447-PA 262..356 281..379 174 43 Plus
Dvir\GJ10315-PA 737 GJ10315-PA 474..572 286..378 160 41.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17294-PA 457 GK17294-PA 1..429 3..421 1383 69.1 Plus
Dwil\GK16887-PA 460 GK16887-PA 153..451 133..421 719 50.5 Plus
Dwil\GK13836-PA 729 GK13836-PA 459..557 286..378 172 41.4 Plus
Dwil\GK17289-PA 388 GK17289-PA 259..350 284..379 171 41.2 Plus
Dwil\GK12916-PA 555 GK12916-PA 279..383 286..378 152 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20521-PA 441 GE20521-PA 1..441 1..421 1654 84.2 Plus
Dyak\GE21524-PA 481 GE21524-PA 173..475 116..421 715 50 Plus
Dyak\GE20519-PA 378 GE20519-PA 244..340 281..379 186 45 Plus

RE08107.hyp Sequence

Translation from 401 to 1666

> RE08107.hyp
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNV*

RE08107.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 421 CG33993-PA 1..421 1..421 2228 100 Plus
CG33993-PB 258 CG33993-PB 1..258 164..421 1330 100 Plus
PVRAP-PA 474 CG32406-PA 183..468 133..421 686 51.9 Plus
CG10479-PA 378 CG10479-PA 240..340 277..379 189 44.2 Plus
CG10479-PB 379 CG10479-PB 241..341 277..379 189 44.2 Plus