Clone RE08109 Report

Search the DGRC for RE08109

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:81
Well:9
Vector:pFlc-1
Associated Gene/TranscriptCG10907-RA
Protein status:RE08109.pep: gold
Preliminary Size:1509
Sequenced Size:1595

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10907 2001-12-17 Blastp of sequenced clone
CG10907 2002-01-01 Sim4 clustering to Release 2
CG10907 2003-01-01 Sim4 clustering to Release 3
CG10907 2008-04-29 Release 5.5 accounting
CG10907 2008-08-15 Release 5.9 accounting
CG10907 2008-12-18 5.12 accounting

Clone Sequence Records

RE08109.complete Sequence

1595 bp (1595 high quality bases) assembled on 2001-12-17

GenBank Submission: AY070988

> RE08109.complete
GCGGTCACACTGCCGTTGAGATTGTTTTGATTTTTGTTAAAAAATGAGCA
ATATTTACATCCAAGAACCACCCACGTCGGGAAAGGTGCTCCTTAAGACC
ACTGTGGGCGACATAGACATCGAGTTGTGGGCACGGGAGTGTCCGAAGGC
GTGCCGCAACTTTGTGCAACTCTGCCTAGAGGGCTACTACAAGAACACCG
AATTCCACCGGCTGGTCAAGGGCTTTATTGTCCAGGGAGGCGATCCGAAT
GGCGACGGCACCGGCGGCGAGTCCATATACGGACAGCCCTTCAAGGATGA
GTTCCACTCCCGACTCCGGTACACGCGTCGTGGCCTCGTCGGCATGGCAA
ATTCTGGAAAGGATGACAATGGCTCACAGTTCTTCTTCACATTTGCTCCG
ACACCGGAGCTGCAGAATAAGAACACGCTTTTTGGAAAGATCACCGGCGA
TACCATCTACAACATGCTCAAGCTGGAAGATGGCATTGTTGACCACCAGG
AAAGACCGATGCACGCACATCGCATCGTTTCTACGGAAGTCCTCTCGAAC
CCATTCGATGATATCGTTCCTCGTATTCTCTCCCAACCTTCCACGAAGAG
CAAAAAGACTAAGAAGGAGCGACAAGGAGTCAAAAACTTCGGACTGCTTT
CTTTTGGCGAAGAAGCCGAAGGTGACGAGGAGGAGACCAACGTCTATGTT
AAACAGAACGCCGGTAAGGCGAAATCCCTGCACGACGTCACAGATGATCC
AAAACTCAGCAAGGAGCCCATTCGTGTACCCAAAGTAGAAAAAGCCGACA
TCGAGGAGCACTTGTCCGACGATTGCCCTGAGGACAGTGTCAAGGATAAA
CCGTCCACTGCTAGTTCGGATCTCATCAAAATGAAACTGTCTAAGAGATC
AAAGAGTGGAGCAGACAAAAAAGTTCAGCCAGTGGAGGAAAAGTCTGATT
CTGAGGATGACGAGGATGTTTTGTTAACACGGGAGGAGGAACAAAGTCGA
AAAGTCTCGGAGGAAAAATCCAAGATCCGTGAGGAAATCGCTTCTCTGAA
AAAGCAGTATCAAATGGATAAGCAGAGCAAAGACAAACTAGTTAATGGAC
AAGAGAAAGCAGCAAAGTCCAATGAAATCAAGGGGTCCAGCGAAAACCAT
TATATTAACGATTTTATAGAGTCTAAGGAGAAGTACACCGCCAAAGTAAA
GCTTCAACCGAAGGGACAGTCAAGAGAGGCATTTACATTGAGCCTACTCT
CCAAGTTCCGAACGAAACTGGATAACTTGAAGCAAAAGTCAAGCTCTGAT
GATGGCGAATCGGAACCGAAGGATATAGACGATCGCGTAGTAGAACAGGA
AATAATCGGCGACGATTGGTTGTCGCATACCTTAAATTTTAATAGTACGA
CTCCGGTTTTAGCTAAGGATGCCAATAAAAAGGGCGACGATTGGTACGAT
GCCTACGATCCACGAAATCCTCTAAATAAACGTAAGCGGGGCGAAACTGG
CTCTAGTAAATCGAGTTCGGGTAAATCAAAAAGCAGTAAACGTGACTTTT
AAAGAAAAAATAAAAAAAGATAGTTTCAATAAAAAAAAAAAAAAA

RE08109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1665 CG10907-RA 70..1652 1..1583 7915 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11784431..11785063 1..633 3075 99.1 Plus
chr3L 24539361 chr3L 11785241..11785624 634..1017 1845 98.7 Plus
chr3L 24539361 chr3L 11785948..11786290 1223..1565 1700 99.7 Plus
chr3L 24539361 chr3L 11785684..11785890 1018..1224 1035 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11793544..11794176 1..633 3165 100 Plus
3L 28110227 3L 11794354..11794737 634..1017 1920 100 Plus
3L 28110227 3L 11795061..11795421 1223..1583 1805 100 Plus
3L 28110227 3L 11794797..11795003 1018..1224 1035 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11786644..11787276 1..633 3165 100 Plus
3L 28103327 3L 11787454..11787837 634..1017 1920 100 Plus
3L 28103327 3L 11788161..11788521 1223..1583 1805 100 Plus
3L 28103327 3L 11787897..11788103 1018..1224 1035 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:04:40 has no hits.

RE08109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:05:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11784431..11785063 1..633 99 -> Plus
chr3L 11785241..11785624 634..1017 98 -> Plus
chr3L 11785684..11785890 1018..1224 100 -> Plus
chr3L 11785950..11786279 1225..1554 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:09 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 44..1552 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:35 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 44..1552 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:24:57 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 44..1552 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 44..1552 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:29 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 44..1552 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:15 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1580 1..1580 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:35 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1580 1..1580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:24:57 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 31..1610 1..1580 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1580 1..1580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:29 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 31..1610 1..1580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11793544..11794176 1..633 100 -> Plus
3L 11794354..11794737 634..1017 100 -> Plus
3L 11794797..11795003 1018..1224 100 -> Plus
3L 11795063..11795418 1225..1580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11793544..11794176 1..633 100 -> Plus
3L 11794354..11794737 634..1017 100 -> Plus
3L 11794797..11795003 1018..1224 100 -> Plus
3L 11795063..11795418 1225..1580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:20 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11793544..11794176 1..633 100 -> Plus
3L 11794354..11794737 634..1017 100 -> Plus
3L 11794797..11795003 1018..1224 100 -> Plus
3L 11795063..11795418 1225..1580 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:24:57 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11786644..11787276 1..633 100 -> Plus
arm_3L 11787454..11787837 634..1017 100 -> Plus
arm_3L 11787897..11788103 1018..1224 100 -> Plus
arm_3L 11788163..11788518 1225..1580 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:30 Download gff for RE08109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11786644..11787276 1..633 100 -> Plus
3L 11787454..11787837 634..1017 100 -> Plus
3L 11787897..11788103 1018..1224 100 -> Plus
3L 11788163..11788518 1225..1580 100   Plus

RE08109.pep Sequence

Translation from 43 to 1551

> RE08109.pep
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DF*

RE08109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25290-PA 496 GF25290-PA 1..483 1..483 2028 85.7 Plus
Dana\GF11272-PA 517 GF11272-PA 280..444 13..178 416 45.8 Plus
Dana\GF25039-PA 175 GF25039-PA 22..172 15..166 377 45.8 Plus
Dana\GF13766-PA 161 GF13766-PA 3..159 15..171 340 45.6 Plus
Dana\GF18772-PA 621 GF18772-PA 3..176 15..183 299 38.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15530-PA 502 GG15530-PA 1..502 1..501 2558 96.6 Plus
Dere\GG22278-PA 517 GG22278-PA 280..464 13..194 421 44.1 Plus
Dere\GG14657-PA 176 GG14657-PA 23..173 15..166 383 46.4 Plus
Dere\GG24170-PA 161 GG24170-PA 3..159 15..171 339 45.6 Plus
Dere\GG12319-PA 654 GG12319-PA 3..176 15..183 300 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15083-PA 499 GH15083-PA 1..482 1..483 1882 73.6 Plus
Dgri\GH19751-PA 513 GH19751-PA 279..443 13..178 406 43.4 Plus
Dgri\GH21768-PA 173 GH21768-PA 20..170 15..166 391 47.7 Plus
Dgri\GH21257-PA 161 GH21257-PA 3..159 15..171 339 45.6 Plus
Dgri\GH20332-PA 205 GH20332-PA 25..196 9..171 277 40 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 502 CG10907-PA 1..502 1..502 2604 100 Plus
CG7747-PA 517 CG7747-PA 280..506 13..250 416 37.9 Plus
Cypl-PA 176 CG13892-PA 23..173 15..166 379 46.4 Plus
CG11777-PA 161 CG11777-PA 3..121 15..133 333 52.9 Plus
CG3511-PB 637 CG3511-PB 484..602 15..133 327 52.9 Plus
CG3511-PA 637 CG3511-PA 484..602 15..133 327 52.9 Plus
CG5808-PA 653 CG5808-PA 3..237 15..242 282 34.2 Plus
CG2852-PD 205 CG2852-PD 25..179 9..156 275 40.1 Plus
CG2852-PA 205 CG2852-PA 25..179 9..156 275 40.1 Plus
Moca-cyp-PA 970 CG1866-PA 26..341 21..353 273 29.4 Plus
ninaA-PA 237 CG3966-PA 37..180 18..156 246 42.9 Plus
CG17266-PB 183 CG17266-PB 28..162 19..146 245 42.3 Plus
CG17266-PA 183 CG17266-PA 28..162 19..146 245 42.3 Plus
CG7768-PB 164 CG7768-PB 17..132 21..133 237 46.2 Plus
CG7768-PA 164 CG7768-PA 17..132 21..133 237 46.2 Plus
Cyp1-PA 227 CG9916-PA 80..195 21..133 229 44.4 Plus
cyp33-PA 300 CG4886-PA 153..267 22..133 229 46.6 Plus
CG8336-PD 383 CG8336-PD 25..151 18..133 187 38.3 Plus
CG8336-PC 383 CG8336-PC 25..151 18..133 187 38.3 Plus
CG8336-PA 383 CG8336-PA 25..151 18..133 187 38.3 Plus
CG8336-PB 383 CG8336-PB 25..151 18..133 187 38.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13730-PA 507 GI13730-PA 1..490 1..485 1886 75 Plus
Dmoj\GI20287-PA 517 GI20287-PA 279..443 13..178 404 43.4 Plus
Dmoj\GI22699-PA 173 GI22699-PA 16..170 8..166 386 46.2 Plus
Dmoj\GI19335-PA 180 GI19335-PA 22..140 15..133 347 53.8 Plus
Dmoj\GI24038-PA 577 GI24038-PA 3..176 15..183 298 36.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20720-PA 503 GL20720-PA 1..495 1..491 1982 78.9 Plus
Dper\GL11352-PA 517 GL11352-PA 280..444 13..178 411 45.2 Plus
Dper\GL22598-PA 175 GL22598-PA 22..172 15..166 379 46.4 Plus
Dper\GL17294-PA 161 GL17294-PA 3..159 15..171 322 44.9 Plus
Dper\GL13859-PA 615 GL13859-PA 3..176 15..183 295 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10630-PA 503 GA10630-PA 1..495 1..491 1987 79.1 Plus
Dpse\GA20560-PA 517 GA20560-PA 280..444 13..178 411 45.2 Plus
Dpse\GA12606-PA 175 GA12606-PA 22..172 15..166 379 46.4 Plus
Dpse\GA11192-PA 162 GA11192-PA 4..160 15..171 322 44.9 Plus
Dpse\GA26948-PA 494 GA26948-PA 3..176 15..183 292 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25298-PA 502 GM25298-PA 1..501 1..501 2611 98.2 Plus
Dsec\GM20066-PA 517 GM20066-PA 280..464 13..194 417 43.6 Plus
Dsec\GM14273-PA 176 GM14273-PA 23..173 15..166 383 46.4 Plus
Dsec\GM21220-PA 161 GM21220-PA 3..159 15..171 339 45.6 Plus
Dsec\GM23461-PA 464 GM23461-PA 3..186 15..194 300 37 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14329-PA 502 GD14329-PA 1..502 1..502 2600 97.8 Plus
Dsim\GD25702-PA 176 GD25702-PA 23..173 15..166 383 46.4 Plus
Dsim\GD10743-PA 161 GD10743-PA 3..159 15..171 339 45.6 Plus
Dsim\GD11875-PA 637 GD11875-PA 484..602 15..133 283 52.9 Plus
Dsim\GD25116-PA 203 GD25116-PA 23..188 9..167 280 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14076-PA 498 GJ14076-PA 1..498 1..499 1945 75.2 Plus
Dvir\GJ15535-PA 281 GJ15535-PA 43..207 13..178 413 44 Plus
Dvir\GJ22016-PA 517 GJ22016-PA 279..443 13..178 413 44 Plus
Dvir\GJ23427-PA 173 GJ23427-PA 16..170 8..166 385 45.6 Plus
Dvir\GJ22213-PA 182 GJ22213-PA 24..142 15..133 338 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24526-PA 508 GK24526-PA 1..495 1..484 1817 72.1 Plus
Dwil\GK20914-PA 520 GK20914-PA 280..444 13..178 406 45.2 Plus
Dwil\GK20536-PA 174 GK20536-PA 21..171 15..166 381 47.1 Plus
Dwil\GK18005-PA 171 GK18005-PA 13..131 15..133 339 52.1 Plus
Dwil\GK13166-PA 594 GK13166-PA 3..176 15..183 290 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21848-PA 502 GE21848-PA 1..502 1..502 2394 95.2 Plus
Dyak\GE14073-PA 517 GE14073-PA 280..464 13..194 415 43.6 Plus
Dyak\GE21017-PA 176 GE21017-PA 23..173 15..166 384 46.4 Plus
Dyak\GE19364-PA 161 GE19364-PA 3..159 15..171 339 45.6 Plus
Dyak\GE11851-PA 205 GE11851-PA 25..190 9..167 278 39.4 Plus

RE08109.hyp Sequence

Translation from 43 to 1551

> RE08109.hyp
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DF*

RE08109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 502 CG10907-PA 1..502 1..502 2604 100 Plus
CG7747-PA 517 CG7747-PA 280..506 13..250 416 37.9 Plus
Cypl-PA 176 CG13892-PA 23..173 15..166 379 46.4 Plus
CG11777-PA 161 CG11777-PA 3..121 15..133 333 52.9 Plus
CG3511-PB 637 CG3511-PB 484..602 15..133 327 52.9 Plus