BDGP Sequence Production Resources |
Search the DGRC for RE08109
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 81 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10907-RA |
Protein status: | RE08109.pep: gold |
Preliminary Size: | 1509 |
Sequenced Size: | 1595 |
Gene | Date | Evidence |
---|---|---|
CG10907 | 2001-12-17 | Blastp of sequenced clone |
CG10907 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10907 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10907 | 2008-04-29 | Release 5.5 accounting |
CG10907 | 2008-08-15 | Release 5.9 accounting |
CG10907 | 2008-12-18 | 5.12 accounting |
1595 bp (1595 high quality bases) assembled on 2001-12-17
GenBank Submission: AY070988
> RE08109.complete GCGGTCACACTGCCGTTGAGATTGTTTTGATTTTTGTTAAAAAATGAGCA ATATTTACATCCAAGAACCACCCACGTCGGGAAAGGTGCTCCTTAAGACC ACTGTGGGCGACATAGACATCGAGTTGTGGGCACGGGAGTGTCCGAAGGC GTGCCGCAACTTTGTGCAACTCTGCCTAGAGGGCTACTACAAGAACACCG AATTCCACCGGCTGGTCAAGGGCTTTATTGTCCAGGGAGGCGATCCGAAT GGCGACGGCACCGGCGGCGAGTCCATATACGGACAGCCCTTCAAGGATGA GTTCCACTCCCGACTCCGGTACACGCGTCGTGGCCTCGTCGGCATGGCAA ATTCTGGAAAGGATGACAATGGCTCACAGTTCTTCTTCACATTTGCTCCG ACACCGGAGCTGCAGAATAAGAACACGCTTTTTGGAAAGATCACCGGCGA TACCATCTACAACATGCTCAAGCTGGAAGATGGCATTGTTGACCACCAGG AAAGACCGATGCACGCACATCGCATCGTTTCTACGGAAGTCCTCTCGAAC CCATTCGATGATATCGTTCCTCGTATTCTCTCCCAACCTTCCACGAAGAG CAAAAAGACTAAGAAGGAGCGACAAGGAGTCAAAAACTTCGGACTGCTTT CTTTTGGCGAAGAAGCCGAAGGTGACGAGGAGGAGACCAACGTCTATGTT AAACAGAACGCCGGTAAGGCGAAATCCCTGCACGACGTCACAGATGATCC AAAACTCAGCAAGGAGCCCATTCGTGTACCCAAAGTAGAAAAAGCCGACA TCGAGGAGCACTTGTCCGACGATTGCCCTGAGGACAGTGTCAAGGATAAA CCGTCCACTGCTAGTTCGGATCTCATCAAAATGAAACTGTCTAAGAGATC AAAGAGTGGAGCAGACAAAAAAGTTCAGCCAGTGGAGGAAAAGTCTGATT CTGAGGATGACGAGGATGTTTTGTTAACACGGGAGGAGGAACAAAGTCGA AAAGTCTCGGAGGAAAAATCCAAGATCCGTGAGGAAATCGCTTCTCTGAA AAAGCAGTATCAAATGGATAAGCAGAGCAAAGACAAACTAGTTAATGGAC AAGAGAAAGCAGCAAAGTCCAATGAAATCAAGGGGTCCAGCGAAAACCAT TATATTAACGATTTTATAGAGTCTAAGGAGAAGTACACCGCCAAAGTAAA GCTTCAACCGAAGGGACAGTCAAGAGAGGCATTTACATTGAGCCTACTCT CCAAGTTCCGAACGAAACTGGATAACTTGAAGCAAAAGTCAAGCTCTGAT GATGGCGAATCGGAACCGAAGGATATAGACGATCGCGTAGTAGAACAGGA AATAATCGGCGACGATTGGTTGTCGCATACCTTAAATTTTAATAGTACGA CTCCGGTTTTAGCTAAGGATGCCAATAAAAAGGGCGACGATTGGTACGAT GCCTACGATCCACGAAATCCTCTAAATAAACGTAAGCGGGGCGAAACTGG CTCTAGTAAATCGAGTTCGGGTAAATCAAAAAGCAGTAAACGTGACTTTT AAAGAAAAAATAAAAAAAGATAGTTTCAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10907-RA | 1665 | CG10907-RA | 70..1652 | 1..1583 | 7915 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11784431..11785063 | 1..633 | 3075 | 99.1 | Plus |
chr3L | 24539361 | chr3L | 11785241..11785624 | 634..1017 | 1845 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 11785948..11786290 | 1223..1565 | 1700 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 11785684..11785890 | 1018..1224 | 1035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11793544..11794176 | 1..633 | 3165 | 100 | Plus |
3L | 28110227 | 3L | 11794354..11794737 | 634..1017 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 11795061..11795421 | 1223..1583 | 1805 | 100 | Plus |
3L | 28110227 | 3L | 11794797..11795003 | 1018..1224 | 1035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11786644..11787276 | 1..633 | 3165 | 100 | Plus |
3L | 28103327 | 3L | 11787454..11787837 | 634..1017 | 1920 | 100 | Plus |
3L | 28103327 | 3L | 11788161..11788521 | 1223..1583 | 1805 | 100 | Plus |
3L | 28103327 | 3L | 11787897..11788103 | 1018..1224 | 1035 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11784431..11785063 | 1..633 | 99 | -> | Plus |
chr3L | 11785241..11785624 | 634..1017 | 98 | -> | Plus |
chr3L | 11785684..11785890 | 1018..1224 | 100 | -> | Plus |
chr3L | 11785950..11786279 | 1225..1554 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1509 | 44..1552 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1509 | 44..1552 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1509 | 44..1552 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1509 | 44..1552 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1509 | 44..1552 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1580 | 1..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1580 | 1..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 31..1610 | 1..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 1..1580 | 1..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10907-RA | 31..1610 | 1..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11793544..11794176 | 1..633 | 100 | -> | Plus |
3L | 11794354..11794737 | 634..1017 | 100 | -> | Plus |
3L | 11794797..11795003 | 1018..1224 | 100 | -> | Plus |
3L | 11795063..11795418 | 1225..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11793544..11794176 | 1..633 | 100 | -> | Plus |
3L | 11794354..11794737 | 634..1017 | 100 | -> | Plus |
3L | 11794797..11795003 | 1018..1224 | 100 | -> | Plus |
3L | 11795063..11795418 | 1225..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11793544..11794176 | 1..633 | 100 | -> | Plus |
3L | 11794354..11794737 | 634..1017 | 100 | -> | Plus |
3L | 11794797..11795003 | 1018..1224 | 100 | -> | Plus |
3L | 11795063..11795418 | 1225..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11786644..11787276 | 1..633 | 100 | -> | Plus |
arm_3L | 11787454..11787837 | 634..1017 | 100 | -> | Plus |
arm_3L | 11787897..11788103 | 1018..1224 | 100 | -> | Plus |
arm_3L | 11788163..11788518 | 1225..1580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11786644..11787276 | 1..633 | 100 | -> | Plus |
3L | 11787454..11787837 | 634..1017 | 100 | -> | Plus |
3L | 11787897..11788103 | 1018..1224 | 100 | -> | Plus |
3L | 11788163..11788518 | 1225..1580 | 100 | Plus |
Translation from 43 to 1551
> RE08109.pep MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR DF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25290-PA | 496 | GF25290-PA | 1..483 | 1..483 | 2028 | 85.7 | Plus |
Dana\GF11272-PA | 517 | GF11272-PA | 280..444 | 13..178 | 416 | 45.8 | Plus |
Dana\GF25039-PA | 175 | GF25039-PA | 22..172 | 15..166 | 377 | 45.8 | Plus |
Dana\GF13766-PA | 161 | GF13766-PA | 3..159 | 15..171 | 340 | 45.6 | Plus |
Dana\GF18772-PA | 621 | GF18772-PA | 3..176 | 15..183 | 299 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15530-PA | 502 | GG15530-PA | 1..502 | 1..501 | 2558 | 96.6 | Plus |
Dere\GG22278-PA | 517 | GG22278-PA | 280..464 | 13..194 | 421 | 44.1 | Plus |
Dere\GG14657-PA | 176 | GG14657-PA | 23..173 | 15..166 | 383 | 46.4 | Plus |
Dere\GG24170-PA | 161 | GG24170-PA | 3..159 | 15..171 | 339 | 45.6 | Plus |
Dere\GG12319-PA | 654 | GG12319-PA | 3..176 | 15..183 | 300 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15083-PA | 499 | GH15083-PA | 1..482 | 1..483 | 1882 | 73.6 | Plus |
Dgri\GH19751-PA | 513 | GH19751-PA | 279..443 | 13..178 | 406 | 43.4 | Plus |
Dgri\GH21768-PA | 173 | GH21768-PA | 20..170 | 15..166 | 391 | 47.7 | Plus |
Dgri\GH21257-PA | 161 | GH21257-PA | 3..159 | 15..171 | 339 | 45.6 | Plus |
Dgri\GH20332-PA | 205 | GH20332-PA | 25..196 | 9..171 | 277 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10907-PA | 502 | CG10907-PA | 1..502 | 1..502 | 2604 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 280..506 | 13..250 | 416 | 37.9 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..173 | 15..166 | 379 | 46.4 | Plus |
CG11777-PA | 161 | CG11777-PA | 3..121 | 15..133 | 333 | 52.9 | Plus |
CG3511-PB | 637 | CG3511-PB | 484..602 | 15..133 | 327 | 52.9 | Plus |
CG3511-PA | 637 | CG3511-PA | 484..602 | 15..133 | 327 | 52.9 | Plus |
CG5808-PA | 653 | CG5808-PA | 3..237 | 15..242 | 282 | 34.2 | Plus |
CG2852-PD | 205 | CG2852-PD | 25..179 | 9..156 | 275 | 40.1 | Plus |
CG2852-PA | 205 | CG2852-PA | 25..179 | 9..156 | 275 | 40.1 | Plus |
Moca-cyp-PA | 970 | CG1866-PA | 26..341 | 21..353 | 273 | 29.4 | Plus |
ninaA-PA | 237 | CG3966-PA | 37..180 | 18..156 | 246 | 42.9 | Plus |
CG17266-PB | 183 | CG17266-PB | 28..162 | 19..146 | 245 | 42.3 | Plus |
CG17266-PA | 183 | CG17266-PA | 28..162 | 19..146 | 245 | 42.3 | Plus |
CG7768-PB | 164 | CG7768-PB | 17..132 | 21..133 | 237 | 46.2 | Plus |
CG7768-PA | 164 | CG7768-PA | 17..132 | 21..133 | 237 | 46.2 | Plus |
Cyp1-PA | 227 | CG9916-PA | 80..195 | 21..133 | 229 | 44.4 | Plus |
cyp33-PA | 300 | CG4886-PA | 153..267 | 22..133 | 229 | 46.6 | Plus |
CG8336-PD | 383 | CG8336-PD | 25..151 | 18..133 | 187 | 38.3 | Plus |
CG8336-PC | 383 | CG8336-PC | 25..151 | 18..133 | 187 | 38.3 | Plus |
CG8336-PA | 383 | CG8336-PA | 25..151 | 18..133 | 187 | 38.3 | Plus |
CG8336-PB | 383 | CG8336-PB | 25..151 | 18..133 | 187 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13730-PA | 507 | GI13730-PA | 1..490 | 1..485 | 1886 | 75 | Plus |
Dmoj\GI20287-PA | 517 | GI20287-PA | 279..443 | 13..178 | 404 | 43.4 | Plus |
Dmoj\GI22699-PA | 173 | GI22699-PA | 16..170 | 8..166 | 386 | 46.2 | Plus |
Dmoj\GI19335-PA | 180 | GI19335-PA | 22..140 | 15..133 | 347 | 53.8 | Plus |
Dmoj\GI24038-PA | 577 | GI24038-PA | 3..176 | 15..183 | 298 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20720-PA | 503 | GL20720-PA | 1..495 | 1..491 | 1982 | 78.9 | Plus |
Dper\GL11352-PA | 517 | GL11352-PA | 280..444 | 13..178 | 411 | 45.2 | Plus |
Dper\GL22598-PA | 175 | GL22598-PA | 22..172 | 15..166 | 379 | 46.4 | Plus |
Dper\GL17294-PA | 161 | GL17294-PA | 3..159 | 15..171 | 322 | 44.9 | Plus |
Dper\GL13859-PA | 615 | GL13859-PA | 3..176 | 15..183 | 295 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10630-PA | 503 | GA10630-PA | 1..495 | 1..491 | 1987 | 79.1 | Plus |
Dpse\GA20560-PA | 517 | GA20560-PA | 280..444 | 13..178 | 411 | 45.2 | Plus |
Dpse\GA12606-PA | 175 | GA12606-PA | 22..172 | 15..166 | 379 | 46.4 | Plus |
Dpse\GA11192-PA | 162 | GA11192-PA | 4..160 | 15..171 | 322 | 44.9 | Plus |
Dpse\GA26948-PA | 494 | GA26948-PA | 3..176 | 15..183 | 292 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25298-PA | 502 | GM25298-PA | 1..501 | 1..501 | 2611 | 98.2 | Plus |
Dsec\GM20066-PA | 517 | GM20066-PA | 280..464 | 13..194 | 417 | 43.6 | Plus |
Dsec\GM14273-PA | 176 | GM14273-PA | 23..173 | 15..166 | 383 | 46.4 | Plus |
Dsec\GM21220-PA | 161 | GM21220-PA | 3..159 | 15..171 | 339 | 45.6 | Plus |
Dsec\GM23461-PA | 464 | GM23461-PA | 3..186 | 15..194 | 300 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14329-PA | 502 | GD14329-PA | 1..502 | 1..502 | 2600 | 97.8 | Plus |
Dsim\GD25702-PA | 176 | GD25702-PA | 23..173 | 15..166 | 383 | 46.4 | Plus |
Dsim\GD10743-PA | 161 | GD10743-PA | 3..159 | 15..171 | 339 | 45.6 | Plus |
Dsim\GD11875-PA | 637 | GD11875-PA | 484..602 | 15..133 | 283 | 52.9 | Plus |
Dsim\GD25116-PA | 203 | GD25116-PA | 23..188 | 9..167 | 280 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14076-PA | 498 | GJ14076-PA | 1..498 | 1..499 | 1945 | 75.2 | Plus |
Dvir\GJ15535-PA | 281 | GJ15535-PA | 43..207 | 13..178 | 413 | 44 | Plus |
Dvir\GJ22016-PA | 517 | GJ22016-PA | 279..443 | 13..178 | 413 | 44 | Plus |
Dvir\GJ23427-PA | 173 | GJ23427-PA | 16..170 | 8..166 | 385 | 45.6 | Plus |
Dvir\GJ22213-PA | 182 | GJ22213-PA | 24..142 | 15..133 | 338 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24526-PA | 508 | GK24526-PA | 1..495 | 1..484 | 1817 | 72.1 | Plus |
Dwil\GK20914-PA | 520 | GK20914-PA | 280..444 | 13..178 | 406 | 45.2 | Plus |
Dwil\GK20536-PA | 174 | GK20536-PA | 21..171 | 15..166 | 381 | 47.1 | Plus |
Dwil\GK18005-PA | 171 | GK18005-PA | 13..131 | 15..133 | 339 | 52.1 | Plus |
Dwil\GK13166-PA | 594 | GK13166-PA | 3..176 | 15..183 | 290 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21848-PA | 502 | GE21848-PA | 1..502 | 1..502 | 2394 | 95.2 | Plus |
Dyak\GE14073-PA | 517 | GE14073-PA | 280..464 | 13..194 | 415 | 43.6 | Plus |
Dyak\GE21017-PA | 176 | GE21017-PA | 23..173 | 15..166 | 384 | 46.4 | Plus |
Dyak\GE19364-PA | 161 | GE19364-PA | 3..159 | 15..171 | 339 | 45.6 | Plus |
Dyak\GE11851-PA | 205 | GE11851-PA | 25..190 | 9..167 | 278 | 39.4 | Plus |
Translation from 43 to 1551
> RE08109.hyp MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR DF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10907-PA | 502 | CG10907-PA | 1..502 | 1..502 | 2604 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 280..506 | 13..250 | 416 | 37.9 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..173 | 15..166 | 379 | 46.4 | Plus |
CG11777-PA | 161 | CG11777-PA | 3..121 | 15..133 | 333 | 52.9 | Plus |
CG3511-PB | 637 | CG3511-PB | 484..602 | 15..133 | 327 | 52.9 | Plus |