BDGP Sequence Production Resources |
Search the DGRC for RE08173
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 81 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tg-RA |
Protein status: | RE08173.pep: gold |
Preliminary Size: | 2211 |
Sequenced Size: | 2810 |
Gene | Date | Evidence |
---|---|---|
CG7356 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7356 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7356 | 2003-08-05 | Blastp of sequenced clone |
CG7356 | 2008-04-29 | Release 5.5 accounting |
CG7356 | 2008-08-15 | Release 5.9 accounting |
CG7356 | 2008-12-18 | 5.12 accounting |
2810 bp (2810 high quality bases) assembled on 2003-08-05
GenBank Submission: BT010024
> RE08173.complete AGTGTCATTCGAATGTTGGAGCTTAATAGACCGCTTCGAATCAACGCCAT CGACGGCGATGACGTGATCGCAGCTGTTACAATTTAAACTGCCTCGATTT TGCATTCCGCGCGAGCAGTTTAACCAAAAAATGACACGCCAGTTAATTGC GGACAGCGAAATTGTTGGGTTCTAGAGTAGCAGCAATATTCCGAAGTTCA AATACCAATCTACAAATCCATCGGAGAATCAACAAAGTAAGGCTTATCAT CGCCAAGGCGAACCGGTTTGCCCAATAGATAAAGTCAGAATACGCCAGCA TTTGAAAAATAACTGGGTGTGTAGTTCGACTTGAGACATGGGTCAAAAAC TATCGTGTTGCCAAAAGTGCGGCGATTGGAAGTGGTGTACATCTAAGGAC AACGAGGAGTCAACGCTGCGTATACGCAATGCCAATGCCAACTATTTTAC GGGCATTCCACAAGGCGACAAAACAGATGGCGCCAGCTCAGCAGTATTGG GCGTTTTGAAGGTCGATCTGTGCCTGGAGGACAACCATGAGGAGCACCAT ACGAGTCACTTCTATGCGGCAGCTGCCAAGGAAGCGTTGGTCGTGCGACG AGGAGAACCCTTCCGGCTGAAGATCCACTTCAATCGAGACTACAGTCCCA GCAAGGACGCCATCAGTTTCATTTTCACAGTAGCGGATGACACCAAGCCG AGTCCCGGTCATGGAACACTCAATGCCCTGGTGCCGCACGATGGCATCGA TTATCTGGGCGACACTTTGGAATGGGGAGCCGGCATCGAATCGCATGAGG GTCAAACGCTTACGGTGCTAATCAAGCCACCATCCACCTGTCCCGTAACG GAATGGAAACTGGACATCGACACGAAGCTGCTGGGCGATGGATCGCGAAG CTATCCCCTGCCGTTGCCCATCTATGTACTCTTTAATCCCTGGTGTCCGG ATGATCAGGTGTATCTGGAGGATCGTGATCAGCGCAAGGAGTACGTGATG CACGATACCACGCTCATCTGGAGGGGATCGTACAACAGATTGCGTCCATC GGTTTGGAAAATCGGGCAATTCGAACGACATGTGCTCGAGTGCAGCCTAA AGGTATTGGGTACGGTGGGCAGGATTCCGCCAGCCTACAGAGGCGATCCC GTGAGAGTTGCTCGCGCCTTGTCCGCACTGGTGAATTCGGTGGATGATGA CGGTGTTTTGCTGGGCAACTGGTCAGAGGACTTCTCCGGCGGCGTGGCAC CCACCAAGTGGACTGGGTCCGTGGAGATTCTTCAGCAATTCTACAAGACC CAGAAGTCGGTGAAGTTTGCACAGTGCTGGAATTTCAGCGGTGTTCTGAC CACCATTGCCAGGAGTCTGGGAATACCGTCTAGGATCATCACTTGCTACT CCTCCGCCCACGATACACAGGCCTCACTCACCGTGGACGTGTTCATCGAC GCGAACAACAAGAAGTTGGATGCAGAGACCACGGACTCGATCTGGAACTA TCACGTGTGGAATGAGCTCTGGATGCAGAGACCGGATTTGGGCGTGGGTG AGCACGGGACCTTCGATGGCTGGCAGGTGGTGGACGCCACTCCGCAGGAG GCCTCCGATAATATGTATCGCGTGGGACCCGCCTCCGTTGCGGCGGTGAA AAACGGTGACATCTTGCGACCATTCGATGGTGGTTTCGTCTTCGCGGAGG TGAATGCGGATAAGCTCTATTGGCGCTACAATGGACCCAGCCAGCCGCTT AAGCTGCTCAGGAAGGATACGCTGGCCATAGGGCATCTCATCAGCACGAA AGCGGTACTCAAATGGGAAAGGGAGGACATCACCGATACGTATAAGCATG CCGAGCGCTCCGAGGAGGAGAGAAGCACCATGCTCAAGGCCCTCAAGCAA TCCCGACATGCGTTCAGTAGATACTATCTGAATGATAATTTCAATGATAT TGAATTTGATATGGAGCTAAAGGACGACATTAAGATTGGGCAGAGCTTCA GTGTGGTCCTGAAGGTGAGCAACAAGAGCGAGAGTCGCACACACATGGCC ACGGGTCAGATCAGTTGCGATGCCGTGCTCTACACGGGAGTGGGTGCCGT GGAGGTGAAGACACTGGGCTTTGAACTGGAATTGGAGCCCAAGAGCAGCG ATTACGTTCGCATGGAGGTGATCTTCGAGGAATACTACGATAAGTTGTCC TCGCAGGCGGCATTCCAGATCTCGGCGGCCGCCAAGGTCAAGGACACCGA CTATGATTACTATGCCCAGGATGATTTCCGTGTGCGCAAGCCGGACATTA AGTTCCAGCTGGGTGAGGCTGCCATTGTGGCCCAGAAGGAGCTGGACGTT ATTCTGCGACTGGAGAACCCGCTGCCCATACCGCTGCACAAGGGTGTGTT CACAGTGGAGGGTCCTGGCATCGAGCAGCCTCTCAAGTTCAAGATCGCTG AAATTCCAGTGGGTGGCACTGCGGCGGCTACCTTCAAGTACACTCCGCCC TACGCGGGGCGTGGCACCATGTTAGCCAAATTCACGTCCAAGGAACTGGA CGATGTGGATGGCTATAGGCACTACGAGATTGAGCCACGACCGGAGGATC TGCTGCAGCCGAATGGAAGCCACCGAAGCAGCAACATCATACGCAGGCGC ACCGATGTAATAGCTTAGGCTATTTCTTTTGTATTTCGTAGTTCATAAGT TATTTGTTGTAAATAATACTATTAATACGTAAACATTTTTTATATAAAAA AAATTCAAAAGATTCTGCGTGATATTTTTCCACGGCTTCTAAACAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8023519..8025490 | 472..2443 | 9665 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 8010427..8010903 | 1..476 | 2275 | 99 | Plus |
chr2L | 23010047 | chr2L | 8025553..8025905 | 2442..2794 | 1735 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8024512..8026483 | 472..2443 | 9845 | 99.9 | Plus |
2L | 23513712 | 2L | 8011407..8011883 | 1..476 | 2320 | 99.6 | Plus |
2L | 23513712 | 2L | 8026546..8026901 | 2442..2797 | 1780 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8024512..8026483 | 472..2443 | 9845 | 99.9 | Plus |
2L | 23513712 | 2L | 8011407..8011883 | 1..476 | 2330 | 99.5 | Plus |
2L | 23513712 | 2L | 8026546..8026901 | 2442..2797 | 1780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8010427..8010903 | 1..476 | 98 | -> | Plus |
chr2L | 8023524..8025490 | 477..2443 | 99 | -> | Plus |
chr2L | 8025555..8025905 | 2444..2794 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7356-RA | 1..2331 | 338..2668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 1..2331 | 338..2668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 1..2331 | 338..2668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7356-RA | 1..2331 | 338..2668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 1..2331 | 338..2668 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7356-RA | 1..2795 | 1..2794 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 1..2795 | 1..2794 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 3..2797 | 1..2794 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7356-RA | 1..2795 | 1..2794 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tg-RA | 3..2797 | 1..2794 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8011407..8011883 | 1..476 | 99 | -> | Plus |
2L | 8024517..8026483 | 477..2443 | 99 | -> | Plus |
2L | 8026548..8026898 | 2444..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8011407..8011883 | 1..476 | 99 | -> | Plus |
2L | 8024517..8026483 | 477..2443 | 99 | -> | Plus |
2L | 8026548..8026898 | 2444..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8011407..8011883 | 1..476 | 99 | -> | Plus |
2L | 8024517..8026483 | 477..2443 | 99 | -> | Plus |
2L | 8026548..8026898 | 2444..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8011407..8011883 | 1..476 | 99 | -> | Plus |
arm_2L | 8024517..8026483 | 477..2443 | 99 | -> | Plus |
arm_2L | 8026548..8026898 | 2444..2794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8011407..8011883 | 1..476 | 99 | -> | Plus |
2L | 8024517..8026483 | 477..2443 | 99 | -> | Plus |
2L | 8026548..8026898 | 2444..2794 | 100 | Plus |
Translation from 337 to 2667
> RE08173.pep MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP RPEDLLQPNGSHRSSNIIRRRTDVIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14572-PA | 775 | GF14572-PA | 1..774 | 1..775 | 3818 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10506-PA | 776 | GG10506-PA | 1..775 | 1..775 | 4061 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11609-PA | 770 | GH11609-PA | 1..769 | 1..775 | 3520 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tg-PA | 776 | CG7356-PA | 1..776 | 1..776 | 4119 | 100 | Plus |
Tg-PB | 768 | CG7356-PB | 33..768 | 41..776 | 3864 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17913-PA | 772 | GI17913-PA | 34..771 | 41..775 | 3516 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19611-PA | 774 | GL19611-PA | 1..774 | 1..776 | 3722 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20290-PA | 774 | GA20290-PA | 1..774 | 1..776 | 3722 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16665-PA | 774 | GM16665-PA | 1..774 | 1..776 | 4098 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23497-PA | 774 | GD23497-PA | 1..774 | 1..776 | 4089 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17684-PA | 773 | GJ17684-PA | 34..772 | 41..775 | 3487 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24691-PA | 777 | GK24691-PA | 1..777 | 1..776 | 3690 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18725-PA | 776 | GE18725-PA | 1..776 | 1..776 | 4086 | 96.9 | Plus |
Translation from 337 to 2667
> RE08173.hyp MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP RPEDLLQPNGSHRSSNIIRRRTDVIA*