Clone RE08173 Report

Search the DGRC for RE08173

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:81
Well:73
Vector:pFlc-1
Associated Gene/TranscriptTg-RA
Protein status:RE08173.pep: gold
Preliminary Size:2211
Sequenced Size:2810

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7356 2002-01-01 Sim4 clustering to Release 2
CG7356 2003-01-01 Sim4 clustering to Release 3
CG7356 2003-08-05 Blastp of sequenced clone
CG7356 2008-04-29 Release 5.5 accounting
CG7356 2008-08-15 Release 5.9 accounting
CG7356 2008-12-18 5.12 accounting

Clone Sequence Records

RE08173.complete Sequence

2810 bp (2810 high quality bases) assembled on 2003-08-05

GenBank Submission: BT010024

> RE08173.complete
AGTGTCATTCGAATGTTGGAGCTTAATAGACCGCTTCGAATCAACGCCAT
CGACGGCGATGACGTGATCGCAGCTGTTACAATTTAAACTGCCTCGATTT
TGCATTCCGCGCGAGCAGTTTAACCAAAAAATGACACGCCAGTTAATTGC
GGACAGCGAAATTGTTGGGTTCTAGAGTAGCAGCAATATTCCGAAGTTCA
AATACCAATCTACAAATCCATCGGAGAATCAACAAAGTAAGGCTTATCAT
CGCCAAGGCGAACCGGTTTGCCCAATAGATAAAGTCAGAATACGCCAGCA
TTTGAAAAATAACTGGGTGTGTAGTTCGACTTGAGACATGGGTCAAAAAC
TATCGTGTTGCCAAAAGTGCGGCGATTGGAAGTGGTGTACATCTAAGGAC
AACGAGGAGTCAACGCTGCGTATACGCAATGCCAATGCCAACTATTTTAC
GGGCATTCCACAAGGCGACAAAACAGATGGCGCCAGCTCAGCAGTATTGG
GCGTTTTGAAGGTCGATCTGTGCCTGGAGGACAACCATGAGGAGCACCAT
ACGAGTCACTTCTATGCGGCAGCTGCCAAGGAAGCGTTGGTCGTGCGACG
AGGAGAACCCTTCCGGCTGAAGATCCACTTCAATCGAGACTACAGTCCCA
GCAAGGACGCCATCAGTTTCATTTTCACAGTAGCGGATGACACCAAGCCG
AGTCCCGGTCATGGAACACTCAATGCCCTGGTGCCGCACGATGGCATCGA
TTATCTGGGCGACACTTTGGAATGGGGAGCCGGCATCGAATCGCATGAGG
GTCAAACGCTTACGGTGCTAATCAAGCCACCATCCACCTGTCCCGTAACG
GAATGGAAACTGGACATCGACACGAAGCTGCTGGGCGATGGATCGCGAAG
CTATCCCCTGCCGTTGCCCATCTATGTACTCTTTAATCCCTGGTGTCCGG
ATGATCAGGTGTATCTGGAGGATCGTGATCAGCGCAAGGAGTACGTGATG
CACGATACCACGCTCATCTGGAGGGGATCGTACAACAGATTGCGTCCATC
GGTTTGGAAAATCGGGCAATTCGAACGACATGTGCTCGAGTGCAGCCTAA
AGGTATTGGGTACGGTGGGCAGGATTCCGCCAGCCTACAGAGGCGATCCC
GTGAGAGTTGCTCGCGCCTTGTCCGCACTGGTGAATTCGGTGGATGATGA
CGGTGTTTTGCTGGGCAACTGGTCAGAGGACTTCTCCGGCGGCGTGGCAC
CCACCAAGTGGACTGGGTCCGTGGAGATTCTTCAGCAATTCTACAAGACC
CAGAAGTCGGTGAAGTTTGCACAGTGCTGGAATTTCAGCGGTGTTCTGAC
CACCATTGCCAGGAGTCTGGGAATACCGTCTAGGATCATCACTTGCTACT
CCTCCGCCCACGATACACAGGCCTCACTCACCGTGGACGTGTTCATCGAC
GCGAACAACAAGAAGTTGGATGCAGAGACCACGGACTCGATCTGGAACTA
TCACGTGTGGAATGAGCTCTGGATGCAGAGACCGGATTTGGGCGTGGGTG
AGCACGGGACCTTCGATGGCTGGCAGGTGGTGGACGCCACTCCGCAGGAG
GCCTCCGATAATATGTATCGCGTGGGACCCGCCTCCGTTGCGGCGGTGAA
AAACGGTGACATCTTGCGACCATTCGATGGTGGTTTCGTCTTCGCGGAGG
TGAATGCGGATAAGCTCTATTGGCGCTACAATGGACCCAGCCAGCCGCTT
AAGCTGCTCAGGAAGGATACGCTGGCCATAGGGCATCTCATCAGCACGAA
AGCGGTACTCAAATGGGAAAGGGAGGACATCACCGATACGTATAAGCATG
CCGAGCGCTCCGAGGAGGAGAGAAGCACCATGCTCAAGGCCCTCAAGCAA
TCCCGACATGCGTTCAGTAGATACTATCTGAATGATAATTTCAATGATAT
TGAATTTGATATGGAGCTAAAGGACGACATTAAGATTGGGCAGAGCTTCA
GTGTGGTCCTGAAGGTGAGCAACAAGAGCGAGAGTCGCACACACATGGCC
ACGGGTCAGATCAGTTGCGATGCCGTGCTCTACACGGGAGTGGGTGCCGT
GGAGGTGAAGACACTGGGCTTTGAACTGGAATTGGAGCCCAAGAGCAGCG
ATTACGTTCGCATGGAGGTGATCTTCGAGGAATACTACGATAAGTTGTCC
TCGCAGGCGGCATTCCAGATCTCGGCGGCCGCCAAGGTCAAGGACACCGA
CTATGATTACTATGCCCAGGATGATTTCCGTGTGCGCAAGCCGGACATTA
AGTTCCAGCTGGGTGAGGCTGCCATTGTGGCCCAGAAGGAGCTGGACGTT
ATTCTGCGACTGGAGAACCCGCTGCCCATACCGCTGCACAAGGGTGTGTT
CACAGTGGAGGGTCCTGGCATCGAGCAGCCTCTCAAGTTCAAGATCGCTG
AAATTCCAGTGGGTGGCACTGCGGCGGCTACCTTCAAGTACACTCCGCCC
TACGCGGGGCGTGGCACCATGTTAGCCAAATTCACGTCCAAGGAACTGGA
CGATGTGGATGGCTATAGGCACTACGAGATTGAGCCACGACCGGAGGATC
TGCTGCAGCCGAATGGAAGCCACCGAAGCAGCAACATCATACGCAGGCGC
ACCGATGTAATAGCTTAGGCTATTTCTTTTGTATTTCGTAGTTCATAAGT
TATTTGTTGTAAATAATACTATTAATACGTAAACATTTTTTATATAAAAA
AAATTCAAAAGATTCTGCGTGATATTTTTCCACGGCTTCTAAACAAAAAA
AAAAAAAAAA

RE08173.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-RA 2941 Tg-RA 112..2909 1..2797 13920 99.8 Plus
Tg.c 3396 Tg.c 1042..3364 475..2797 11600 99.9 Plus
Tg-RB 2849 Tg-RB 495..2817 475..2797 11600 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8023519..8025490 472..2443 9665 99.3 Plus
chr2L 23010047 chr2L 8010427..8010903 1..476 2275 99 Plus
chr2L 23010047 chr2L 8025553..8025905 2442..2794 1735 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8024512..8026483 472..2443 9845 99.9 Plus
2L 23513712 2L 8011407..8011883 1..476 2320 99.6 Plus
2L 23513712 2L 8026546..8026901 2442..2797 1780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8024512..8026483 472..2443 9845 99.9 Plus
2L 23513712 2L 8011407..8011883 1..476 2330 99.5 Plus
2L 23513712 2L 8026546..8026901 2442..2797 1780 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:33:39 has no hits.

RE08173.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:31 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8010427..8010903 1..476 98 -> Plus
chr2L 8023524..8025490 477..2443 99 -> Plus
chr2L 8025555..8025905 2444..2794 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:24 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 1..2331 338..2668 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:33 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 1..2331 338..2668 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:38 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 1..2331 338..2668 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:54 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 1..2331 338..2668 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:37 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 1..2331 338..2668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:23 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 1..2795 1..2794 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:33 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 1..2795 1..2794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:38 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 3..2797 1..2794 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:54 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 1..2795 1..2794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:37 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 3..2797 1..2794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:31 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8011407..8011883 1..476 99 -> Plus
2L 8024517..8026483 477..2443 99 -> Plus
2L 8026548..8026898 2444..2794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:31 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8011407..8011883 1..476 99 -> Plus
2L 8024517..8026483 477..2443 99 -> Plus
2L 8026548..8026898 2444..2794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:31 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8011407..8011883 1..476 99 -> Plus
2L 8024517..8026483 477..2443 99 -> Plus
2L 8026548..8026898 2444..2794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:38 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8011407..8011883 1..476 99 -> Plus
arm_2L 8024517..8026483 477..2443 99 -> Plus
arm_2L 8026548..8026898 2444..2794 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:22 Download gff for RE08173.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8011407..8011883 1..476 99 -> Plus
2L 8024517..8026483 477..2443 99 -> Plus
2L 8026548..8026898 2444..2794 100   Plus

RE08173.pep Sequence

Translation from 337 to 2667

> RE08173.pep
MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS
SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR
DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI
ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN
PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL
ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS
GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI
ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD
LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF
VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD
TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI
GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE
PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR
KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK
FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP
RPEDLLQPNGSHRSSNIIRRRTDVIA*

RE08173.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14572-PA 775 GF14572-PA 1..774 1..775 3818 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10506-PA 776 GG10506-PA 1..775 1..775 4061 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11609-PA 770 GH11609-PA 1..769 1..775 3520 83.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-PA 776 CG7356-PA 1..776 1..776 4119 100 Plus
Tg-PB 768 CG7356-PB 33..768 41..776 3864 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17913-PA 772 GI17913-PA 34..771 41..775 3516 86.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19611-PA 774 GL19611-PA 1..774 1..776 3722 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20290-PA 774 GA20290-PA 1..774 1..776 3722 88 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16665-PA 774 GM16665-PA 1..774 1..776 4098 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23497-PA 774 GD23497-PA 1..774 1..776 4089 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17684-PA 773 GJ17684-PA 34..772 41..775 3487 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24691-PA 777 GK24691-PA 1..777 1..776 3690 87 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18725-PA 776 GE18725-PA 1..776 1..776 4086 96.9 Plus

RE08173.hyp Sequence

Translation from 337 to 2667

> RE08173.hyp
MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS
SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR
DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI
ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN
PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL
ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS
GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI
ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD
LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF
VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD
TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI
GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE
PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR
KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK
FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP
RPEDLLQPNGSHRSSNIIRRRTDVIA*

RE08173.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-PA 776 CG7356-PA 1..776 1..776 4119 100 Plus
Tg-PB 768 CG7356-PB 33..768 41..776 3864 99.5 Plus